Wall clock time and date at job start Mon Mar 30 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.40742 * 120.11082 * 274.72575 * 11 10 9 13 13 O 1.35455 * 120.50408 * 0.02562 * 12 11 10 14 14 C 1.38363 * 118.99242 * 179.77721 * 12 11 10 15 15 C 1.39873 * 119.16355 * 0.49446 * 14 12 11 16 16 O 1.22125 * 119.91631 * 179.72269 * 15 14 12 17 17 N 1.34587 * 120.16558 * 359.74706 * 15 14 12 18 18 H 0.97008 * 119.47127 * 179.97438 * 17 15 14 19 19 C 1.35307 * 120.10365 * 95.00421 * 11 10 9 20 20 Cl 1.73598 * 119.58283 * 359.95314 * 19 11 10 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 23 23 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 0.96705 * 113.99987 * 179.97438 * 13 12 11 27 27 H 1.08005 * 120.41848 * 180.24120 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4916 -4.9672 -0.0075 12 6 1.0576 -5.5313 1.2067 13 8 1.3110 -4.9096 2.3832 14 6 0.3636 -6.7280 1.1800 15 6 0.1219 -7.3485 -0.0500 16 8 -0.4849 -8.4076 -0.0892 17 7 0.5568 -6.7815 -1.1905 18 1 0.3839 -7.2207 -2.0380 19 6 1.2350 -5.6032 -1.1738 20 17 1.7779 -4.9057 -2.6679 21 1 -0.4851 0.8401 0.0004 22 1 0.6283 -2.5592 0.8921 23 1 0.6202 -2.5546 -0.8878 24 1 2.8677 -3.6020 -0.9008 25 1 2.8758 -3.6067 0.8792 26 1 0.9707 -5.3787 3.1573 27 1 0.0164 -7.1794 2.0977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238726774.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:59 Heat of formation + Delta-G solvation = -71.487036 kcal Electronic energy + Delta-G solvation = -15070.217297 eV Core-core repulsion = 12240.075869 eV Total energy + Delta-G solvation = -2830.141428 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.17398 -38.46418 -37.41497 -35.98279 -34.26215 -32.50674 -31.11466 -28.59811 -25.09971 -24.02365 -22.67637 -20.82377 -18.77724 -18.24927 -17.57135 -16.35490 -15.63973 -15.38017 -14.81781 -14.48201 -13.88412 -13.77169 -13.56427 -13.03870 -12.56939 -12.29162 -11.79732 -11.48617 -11.11487 -10.92599 -10.85667 -10.62389 -10.08631 -9.84479 -9.80613 -9.14956 -9.00482 -8.35651 -7.82865 -6.00785 -4.03294 0.73946 1.45314 1.90714 3.07487 3.31224 3.37912 3.40848 3.62523 3.74561 4.44967 4.85652 4.92375 5.13027 5.35458 5.45306 5.97236 6.02429 6.43194 6.51345 6.59043 6.89078 6.98705 7.40033 7.66040 7.78428 7.98433 8.08679 8.38623 9.03064 9.60567 11.10404 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.006737 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.800665 B = 4154.953156 C = 4687.346271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.518 4.518 8 H 0.056 0.944 9 C 0.032 3.968 10 C -0.065 4.065 11 C -0.150 4.150 12 C 0.265 3.735 13 O -0.442 6.442 14 C -0.370 4.370 15 C 0.543 3.457 16 O -0.565 6.565 17 N -0.612 5.612 18 H 0.415 0.585 19 C 0.202 3.798 20 Cl 0.000 7.000 21 H 0.260 0.740 22 H 0.019 0.981 23 H 0.017 0.983 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.405 0.595 27 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.334 -10.908 -0.613 11.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.005 4.005 10 C -0.102 4.102 11 C -0.157 4.157 12 C 0.210 3.790 13 O -0.242 6.242 14 C -0.392 4.392 15 C 0.347 3.653 16 O -0.450 6.450 17 N -0.249 5.249 18 H 0.253 0.747 19 C 0.068 3.932 20 Cl 0.029 6.971 21 H 0.070 0.930 22 H 0.037 0.963 23 H 0.036 0.964 24 H 0.088 0.912 25 H 0.090 0.910 26 H 0.258 0.742 27 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.170 -10.856 -0.909 11.346 hybrid contribution 0.051 0.527 -0.078 0.535 sum 3.221 -10.329 -0.987 10.864 Atomic orbital electron populations 1.69966 1.06047 1.26588 1.50775 1.24992 0.94803 0.99161 0.95339 0.86618 0.79885 0.83567 0.78077 1.20711 1.21280 1.19836 1.21190 0.93031 0.90786 1.50652 0.92551 1.19049 0.93596 0.90284 0.97539 1.20733 0.98298 0.88747 1.02467 1.19029 1.08001 1.01369 0.87276 1.18958 0.86231 0.87646 0.86123 1.84974 1.74780 1.49850 1.14600 1.22228 1.17106 1.00727 0.99186 1.16300 0.80297 0.85502 0.83213 1.90988 1.44572 1.23123 1.86283 1.43682 1.49023 1.19477 1.12767 0.74723 1.20629 0.95913 0.87061 0.89640 1.98461 1.87134 1.81955 1.29586 0.93011 0.96252 0.96442 0.91235 0.90980 0.74207 0.82893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.36 13.29 55.43 0.74 -25.62 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.39 15 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 15 7 C -0.52 -14.10 9.11 -34.44 -0.31 -14.41 15 8 H 0.06 1.48 7.74 -52.49 -0.41 1.07 15 9 C 0.03 0.80 4.96 -27.88 -0.14 0.66 15 10 C -0.06 -1.25 4.69 -27.89 -0.13 -1.38 15 11 C -0.15 -2.50 5.12 -104.72 -0.54 -3.03 15 12 C 0.26 3.97 6.92 -38.59 -0.27 3.71 15 13 O -0.44 -5.95 12.80 -18.06 -0.23 -6.19 15 14 C -0.37 -5.30 9.71 -38.92 -0.38 -5.68 15 15 C 0.54 8.73 7.66 -15.73 -0.12 8.61 15 16 O -0.56 -10.67 17.93 4.80 0.09 -10.58 15 17 N -0.61 -8.52 5.24 -12.33 -0.06 -8.58 15 18 H 0.41 4.75 8.83 -40.82 -0.36 4.39 15 19 C 0.20 3.01 7.29 -16.77 -0.12 2.89 15 20 Cl 0.00 0.00 27.18 -51.86 -1.41 -1.41 15 21 H 0.26 7.26 8.31 -40.82 -0.34 6.92 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 15 24 H 0.07 1.28 6.61 -51.93 -0.34 0.94 15 25 H 0.07 1.39 7.74 -51.93 -0.40 0.99 15 26 H 0.40 2.96 8.75 45.56 0.40 3.36 15 27 H 0.15 1.82 8.00 -52.48 -0.42 1.40 15 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -33.17 260.47 -5.60 -38.77 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: -1.51 Total: 0.66 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -2.10 Total: -7.11 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: 0.67 Total: -34.20 kcal Atomic # 8 Polarization: -16.62 SS G_CDS: -0.15 Total: -16.77 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -1.41 Total: -1.41 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.17 -5.60 -38.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238726774.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.721 kcal (2) G-P(sol) polarization free energy of solvation -33.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds