Wall clock time and date at job start Mon Mar 30 2020 04:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.40742 * 120.11082 * 274.72575 * 11 10 9 13 13 O 1.35455 * 120.50408 * 0.02562 * 12 11 10 14 14 C 1.38363 * 118.99242 * 179.77721 * 12 11 10 15 15 C 1.39873 * 119.16355 * 0.49446 * 14 12 11 16 16 O 1.22125 * 119.91631 * 179.72269 * 15 14 12 17 17 N 1.34587 * 120.16558 * 359.74706 * 15 14 12 18 18 H 0.97008 * 119.47127 * 179.97438 * 17 15 14 19 19 C 1.35307 * 120.10365 * 95.00421 * 11 10 9 20 20 Cl 1.73598 * 119.58283 * 359.95314 * 19 11 10 21 21 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 23 23 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 24 24 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 25 25 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 26 26 H 0.96705 * 113.99987 * 179.97438 * 13 12 11 27 27 H 1.08005 * 120.41848 * 180.24120 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4916 -4.9672 -0.0075 12 6 1.0576 -5.5313 1.2067 13 8 1.3110 -4.9096 2.3832 14 6 0.3636 -6.7280 1.1800 15 6 0.1219 -7.3485 -0.0500 16 8 -0.4849 -8.4076 -0.0892 17 7 0.5568 -6.7815 -1.1905 18 1 0.3839 -7.2207 -2.0380 19 6 1.2350 -5.6032 -1.1738 20 17 1.7779 -4.9057 -2.6679 21 1 -0.4851 0.8401 0.0004 22 1 0.6283 -2.5592 0.8921 23 1 0.6202 -2.5546 -0.8878 24 1 2.8677 -3.6020 -0.9008 25 1 2.8758 -3.6067 0.8792 26 1 0.9707 -5.3787 3.1573 27 1 0.0164 -7.1794 2.0977 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238726774.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:59 Heat of formation + Delta-G solvation = -96.121866 kcal Electronic energy + Delta-G solvation = -15071.285543 eV Core-core repulsion = 12240.075869 eV Total energy + Delta-G solvation = -2831.209675 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.39808 -39.62845 -38.64019 -37.22244 -35.97239 -34.23263 -32.50602 -30.22080 -26.84293 -25.26547 -24.13865 -22.49928 -19.91814 -19.52046 -18.84215 -18.34888 -16.92661 -16.61730 -16.42161 -16.01805 -15.24670 -15.01754 -14.84474 -14.42365 -14.12691 -14.05936 -13.44194 -12.85759 -12.82812 -12.54597 -12.36704 -12.16793 -11.63404 -11.61040 -11.38849 -11.15450 -10.47834 -10.26512 -9.11148 -8.12915 -6.22703 -0.44070 0.23916 0.62939 1.45163 1.45584 1.56445 1.90831 2.40432 2.47270 2.73383 3.21342 3.61570 3.71063 3.97098 4.30340 4.64186 4.75141 4.90123 5.08551 5.24295 5.39362 5.59239 5.65860 5.81385 5.92348 6.30534 6.56311 6.86390 6.94201 7.46022 8.98558 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.030973 B = 0.006737 C = 0.005972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.800665 B = 4154.953156 C = 4687.346271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.287 1.287 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.063 0.937 9 C 0.040 3.960 10 C -0.049 4.049 11 C -0.176 4.176 12 C 0.268 3.732 13 O -0.452 6.452 14 C -0.364 4.364 15 C 0.536 3.464 16 O -0.596 6.596 17 N -0.599 5.599 18 H 0.427 0.573 19 C 0.217 3.783 20 Cl 0.011 6.989 21 H 0.261 0.739 22 H -0.009 1.009 23 H -0.005 1.005 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.429 0.571 27 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.338 -10.944 -0.525 11.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.572 4.572 8 H 0.082 0.918 9 C 0.003 3.997 10 C -0.086 4.086 11 C -0.183 4.183 12 C 0.213 3.787 13 O -0.256 6.256 14 C -0.387 4.387 15 C 0.341 3.659 16 O -0.484 6.484 17 N -0.237 5.237 18 H 0.267 0.733 19 C 0.081 3.919 20 Cl 0.040 6.960 21 H 0.070 0.930 22 H 0.009 0.991 23 H 0.013 0.987 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.287 0.713 27 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 4.189 -10.908 -0.816 11.713 hybrid contribution -0.263 0.525 -0.122 0.599 sum 3.926 -10.383 -0.938 11.140 Atomic orbital electron populations 1.70100 1.07744 1.27509 1.52063 1.25877 0.95606 1.03008 0.95015 0.85551 0.78823 0.78948 0.78363 1.19963 1.21238 1.18612 1.21667 0.93646 0.92044 1.49873 0.91835 1.18863 0.93919 0.91907 0.94981 1.20381 0.97165 0.88199 1.02894 1.18901 1.09529 1.01027 0.88828 1.18843 0.86014 0.87647 0.86164 1.84937 1.74867 1.50545 1.15218 1.22381 1.16528 1.00244 0.99541 1.16569 0.80085 0.85237 0.84003 1.90976 1.46167 1.24478 1.86770 1.43556 1.47987 1.18933 1.13194 0.73303 1.20585 0.94770 0.86828 0.89688 1.98471 1.86911 1.81790 1.28805 0.93002 0.99079 0.98691 0.90429 0.90935 0.71267 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.58 13.29 21.45 0.28 -55.30 15 2 C 0.00 0.14 5.46 84.65 0.46 0.60 15 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 15 4 H -0.27 -11.93 7.11 99.48 0.71 -11.22 15 5 H -0.29 -12.76 7.11 99.48 0.71 -12.06 15 6 H -0.26 -11.18 7.11 99.48 0.71 -10.48 15 7 C -0.53 -28.96 9.11 25.60 0.23 -28.73 15 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 15 9 C 0.04 2.01 4.96 29.85 0.15 2.16 15 10 C -0.05 -1.84 4.69 29.85 0.14 -1.70 15 11 C -0.18 -5.69 5.12 -19.93 -0.10 -5.79 15 12 C 0.27 7.67 6.92 22.91 0.16 7.83 15 13 O -0.45 -11.49 12.80 -87.52 -1.12 -12.61 15 14 C -0.36 -9.79 9.71 22.70 0.22 -9.57 15 15 C 0.54 16.47 7.66 84.67 0.65 17.12 15 16 O -0.60 -21.89 17.93 -5.72 -0.10 -21.99 15 17 N -0.60 -15.85 5.24 -311.07 -1.63 -17.48 15 18 H 0.43 9.16 8.83 -92.70 -0.82 8.34 15 19 C 0.22 6.19 7.29 83.38 0.61 6.80 15 20 Cl 0.01 0.30 27.18 -2.72 -0.07 0.23 15 21 H 0.26 14.71 8.31 -92.71 -0.77 13.94 15 22 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 15 23 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 15 24 H 0.08 2.77 6.61 -2.39 -0.02 2.76 15 25 H 0.07 2.73 7.74 -2.39 -0.02 2.71 15 26 H 0.43 5.37 8.75 -74.05 -0.65 4.72 15 27 H 0.18 3.77 8.00 -2.91 -0.02 3.75 15 Total: -1.00 -70.16 260.47 1.67 -68.50 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -0.23 Total: 4.87 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 2.52 Total: -11.28 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.34 Total: -72.77 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -1.22 Total: -34.60 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 17 Polarization: 0.30 SS G_CDS: -0.07 Total: 0.23 kcal Total: -70.16 1.67 -68.50 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238726774.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.626 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds