Wall clock time and date at job start Mon Mar 30 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00217 * 2 1 4 4 C 1.52998 * 109.47615 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46940 * 64.99967 * 4 3 2 6 6 C 1.46898 * 110.99608 * 189.99941 * 5 4 3 7 7 C 1.50700 * 109.46654 * 136.70434 * 6 5 4 8 8 H 1.08002 * 120.00233 * 325.74706 * 7 6 5 9 9 C 1.37881 * 120.00010 * 145.75749 * 7 6 5 10 10 N 1.31520 * 120.00175 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46909 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.47063 * 299.98893 * 11 9 7 14 14 H 1.48494 * 109.47481 * 59.99578 * 11 9 7 15 15 C 1.46897 * 111.00113 * 66.05110 * 5 4 3 16 16 H 1.09004 * 110.01730 * 27.72122 * 15 5 4 17 17 C 1.54260 * 110.03611 * 149.11326 * 15 5 4 18 18 C 1.54891 * 104.19621 * 142.89473 * 17 15 5 19 19 C 1.54888 * 102.74785 * 322.05695 * 18 17 15 20 20 C 1.53878 * 110.03170 * 266.28485 * 15 5 4 21 21 H 1.08995 * 110.03977 * 121.42883 * 20 15 5 22 22 N 1.46899 * 110.02901 * 359.97438 * 20 15 5 23 23 H 1.08992 * 109.47234 * 299.99724 * 1 2 3 24 24 H 1.09003 * 109.47024 * 60.00022 * 1 2 3 25 25 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46754 * 59.99778 * 3 2 1 27 27 H 1.09003 * 109.47217 * 300.00502 * 3 2 1 28 28 H 1.09005 * 109.47063 * 305.00205 * 4 3 2 29 29 H 1.09002 * 109.47242 * 185.00435 * 4 3 2 30 30 H 1.08998 * 109.47337 * 16.70882 * 6 5 4 31 31 H 1.08997 * 109.47501 * 256.70343 * 6 5 4 32 32 H 0.97003 * 119.99352 * 0.02562 * 10 9 7 33 33 H 1.09001 * 110.48776 * 261.57074 * 17 15 5 34 34 H 1.09004 * 110.48504 * 24.08544 * 17 15 5 35 35 H 1.08999 * 110.75651 * 80.37335 * 18 17 15 36 36 H 1.09005 * 110.75470 * 203.56112 * 18 17 15 37 37 H 1.09000 * 110.48666 * 156.62340 * 19 18 17 38 38 H 1.08998 * 110.48657 * 279.13469 * 19 18 17 39 39 H 1.00906 * 110.99993 * 174.92004 * 22 20 15 40 40 H 1.00899 * 111.00246 * 298.87273 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 5.4036 0.2134 -1.1948 7 6 5.6097 -1.1589 -1.7823 8 1 4.8529 -1.9192 -1.6572 9 6 6.7647 -1.4441 -2.4793 10 7 7.6863 -0.5182 -2.6319 11 14 7.0200 -3.1450 -3.2082 12 1 8.3311 -3.1938 -3.9037 13 1 6.9975 -4.1574 -2.1220 14 1 5.9342 -3.4358 -4.1786 15 6 3.6970 1.4347 -2.4023 16 1 3.6944 2.4780 -2.0863 17 6 4.7566 1.2184 -3.5023 18 6 3.9597 1.3343 -4.8254 19 6 2.6187 0.6411 -4.4786 20 6 2.3376 1.0678 -3.0230 21 1 1.6748 1.9329 -3.0089 22 7 1.7298 -0.0451 -2.2813 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1766 0.0903 30 1 5.7357 0.2178 -0.1566 31 1 5.9802 0.9426 -1.7638 32 1 7.5535 0.3651 -2.2537 33 1 5.5238 1.9909 -3.4502 34 1 5.2054 0.2293 -3.4104 35 1 3.7975 2.3796 -5.0883 36 1 4.4718 0.8096 -5.6320 37 1 1.8258 0.9922 -5.1390 38 1 2.7200 -0.4420 -4.5480 39 1 0.8016 -0.2437 -2.6237 40 1 2.3133 -0.8673 -2.3206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250168925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:52 Heat of formation + Delta-G solvation = -13.443792 kcal Electronic energy + Delta-G solvation = -19570.089033 eV Core-core repulsion = 16806.973330 eV Total energy + Delta-G solvation = -2763.115703 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.00348 -36.75697 -34.89252 -32.86279 -31.64951 -29.22762 -27.15933 -26.07329 -25.53863 -24.53423 -22.18176 -20.97829 -20.00520 -18.22818 -16.79684 -16.17300 -15.78200 -15.13466 -14.91482 -14.27158 -13.97919 -13.69198 -13.48017 -13.22630 -12.67929 -12.45046 -12.31973 -11.98854 -11.38608 -11.12712 -10.98894 -10.85064 -10.73436 -10.59338 -10.31552 -10.11054 -10.09857 -9.98469 -9.93145 -9.39665 -8.78955 -8.66833 -8.27904 -7.53014 -6.96650 -6.24034 -3.94291 3.47998 3.49168 3.67913 4.52633 4.57474 4.92281 5.17100 5.25891 5.39309 5.51992 5.65079 5.67012 5.77981 5.89646 5.92518 5.99357 6.00955 6.07985 6.12628 6.14198 6.20935 6.25355 6.38746 6.50823 6.56143 6.67340 6.67690 6.86435 7.02930 7.14779 7.51937 7.92420 8.03367 8.17598 8.30412 8.41327 8.47051 8.74695 8.98692 9.72376 11.08618 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.009145 C = 0.008188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.661981 B = 3061.180656 C = 3418.747389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.334 6.334 3 C 0.092 3.908 4 C 0.062 3.938 5 N -0.496 5.496 6 C 0.161 3.839 7 C -0.565 4.565 8 H 0.056 0.944 9 C 0.013 3.987 10 N -0.918 5.918 11 Si 1.066 2.934 12 H -0.285 1.285 13 H -0.289 1.289 14 H -0.289 1.289 15 C 0.094 3.906 16 H 0.025 0.975 17 C -0.145 4.145 18 C -0.120 4.120 19 C -0.153 4.153 20 C 0.099 3.901 21 H 0.058 0.942 22 N -0.796 5.796 23 H 0.014 0.986 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.022 0.978 30 H 0.000 1.000 31 H 0.019 0.981 32 H 0.266 0.734 33 H 0.046 0.954 34 H 0.132 0.868 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.308 0.692 40 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.021 4.096 -0.180 12.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.251 6.251 3 C 0.015 3.985 4 C -0.067 4.067 5 N -0.220 5.220 6 C 0.036 3.964 7 C -0.604 4.604 8 H 0.074 0.926 9 C -0.190 4.190 10 N -0.556 5.556 11 Si 0.895 3.105 12 H -0.211 1.211 13 H -0.215 1.215 14 H -0.216 1.216 15 C -0.016 4.016 16 H 0.043 0.957 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.193 4.193 20 C -0.014 4.014 21 H 0.076 0.924 22 N -0.325 5.325 23 H 0.032 0.968 24 H 0.050 0.950 25 H 0.087 0.913 26 H 0.033 0.967 27 H 0.064 0.936 28 H 0.088 0.912 29 H 0.040 0.960 30 H 0.018 0.982 31 H 0.037 0.963 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.150 0.850 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.119 0.881 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -11.014 3.021 -0.436 11.429 hybrid contribution -0.896 1.651 0.017 1.878 sum -11.910 4.672 -0.419 12.800 Atomic orbital electron populations 1.22417 0.84248 1.00831 0.97816 1.88079 1.16388 1.26272 1.94380 1.22192 0.93580 0.85639 0.97123 1.22105 0.93533 0.96266 0.94788 1.62089 1.20759 1.39928 0.99242 1.20228 0.83299 0.97298 0.95542 1.21940 1.05293 0.96828 1.36346 0.92567 1.25783 0.92758 1.04812 0.95615 1.70851 1.34951 1.04615 1.45194 0.83576 0.75917 0.74713 0.76288 1.21100 1.21513 1.21603 1.22232 0.94122 0.92928 0.92281 0.95708 1.23057 0.96554 1.06509 0.92082 1.22346 0.96122 0.98886 0.98447 1.23212 0.97028 1.00700 0.98370 1.22036 0.95152 0.94609 0.89638 0.92420 1.59077 1.04616 1.11370 1.57445 0.96766 0.95042 0.91261 0.96664 0.93560 0.91237 0.96029 0.98228 0.96278 0.92207 0.93568 0.85020 0.93096 0.92297 0.93298 0.91581 0.88100 0.82514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 10.23 101.05 1.03 1.62 16 2 O -0.33 -5.72 8.21 -35.23 -0.29 -6.01 16 3 C 0.09 1.53 5.22 37.16 0.19 1.72 16 4 C 0.06 1.18 5.07 -3.82 -0.02 1.16 16 5 N -0.50 -10.52 2.98 -226.75 -0.68 -11.20 16 6 C 0.16 4.05 4.66 -4.98 -0.02 4.02 16 7 C -0.56 -15.40 7.84 -34.44 -0.27 -15.67 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.01 0.37 4.71 -17.82 -0.08 0.29 16 10 N -0.92 -26.85 13.62 55.43 0.75 -26.09 16 11 Si 1.07 25.06 29.90 -169.99 -5.08 19.98 16 12 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 14 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 15 C 0.09 1.82 2.56 -66.60 -0.17 1.65 16 16 H 0.03 0.48 7.63 -51.93 -0.40 0.08 16 17 C -0.14 -3.02 4.72 -25.07 -0.12 -3.14 16 18 C -0.12 -2.09 6.91 -24.74 -0.17 -2.26 16 19 C -0.15 -2.46 6.51 -25.07 -0.16 -2.62 16 20 C 0.10 1.63 2.82 -66.59 -0.19 1.44 16 21 H 0.06 0.89 7.79 -51.93 -0.40 0.49 16 22 N -0.80 -12.78 3.33 -3.72 -0.01 -12.79 16 23 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 24 H 0.03 0.39 7.46 -51.93 -0.39 0.00 16 25 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.05 0.76 5.51 -51.93 -0.29 0.47 16 28 H 0.07 1.40 7.83 -51.93 -0.41 0.99 16 29 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 30 H 0.00 -0.01 7.44 -51.93 -0.39 -0.39 16 31 H 0.02 0.50 4.07 -51.93 -0.21 0.29 16 32 H 0.27 7.79 6.49 -40.82 -0.26 7.52 16 33 H 0.05 0.99 7.86 -51.93 -0.41 0.58 16 34 H 0.13 3.27 4.30 -51.93 -0.22 3.05 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 1.14 7.93 -51.93 -0.41 0.73 16 39 H 0.31 4.26 8.45 -39.29 -0.33 3.93 16 40 H 0.36 6.81 8.33 -39.29 -0.33 6.49 16 LS Contribution 296.28 15.07 4.46 4.46 Total: -1.00 -28.11 296.28 -7.42 -35.53 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -6.60 Total: 7.91 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: 0.02 Total: -11.79 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: 0.07 Total: -50.08 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.29 Total: -6.01 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.08 Total: 19.98 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -28.11 -7.42 -35.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250168925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.085 kcal (2) G-P(sol) polarization free energy of solvation -28.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds