Wall clock time and date at job start Mon Mar 30 2020 04:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 114.00217 * 2 1 4 4 C 1.52998 * 109.47615 * 179.97438 * 3 2 1 5 5 N 1.46901 * 109.46940 * 64.99967 * 4 3 2 6 6 C 1.46898 * 110.99608 * 189.99941 * 5 4 3 7 7 C 1.50700 * 109.46654 * 136.70434 * 6 5 4 8 8 H 1.08002 * 120.00233 * 325.74706 * 7 6 5 9 9 C 1.37881 * 120.00010 * 145.75749 * 7 6 5 10 10 N 1.31520 * 120.00175 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 120.00032 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.46909 * 179.97438 * 11 9 7 13 13 H 1.48504 * 109.47063 * 299.98893 * 11 9 7 14 14 H 1.48494 * 109.47481 * 59.99578 * 11 9 7 15 15 C 1.46897 * 111.00113 * 66.05110 * 5 4 3 16 16 H 1.09004 * 110.01730 * 27.72122 * 15 5 4 17 17 C 1.54260 * 110.03611 * 149.11326 * 15 5 4 18 18 C 1.54891 * 104.19621 * 142.89473 * 17 15 5 19 19 C 1.54888 * 102.74785 * 322.05695 * 18 17 15 20 20 C 1.53878 * 110.03170 * 266.28485 * 15 5 4 21 21 H 1.08995 * 110.03977 * 121.42883 * 20 15 5 22 22 N 1.46899 * 110.02901 * 359.97438 * 20 15 5 23 23 H 1.08992 * 109.47234 * 299.99724 * 1 2 3 24 24 H 1.09003 * 109.47024 * 60.00022 * 1 2 3 25 25 H 1.09000 * 109.46806 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46754 * 59.99778 * 3 2 1 27 27 H 1.09003 * 109.47217 * 300.00502 * 3 2 1 28 28 H 1.09005 * 109.47063 * 305.00205 * 4 3 2 29 29 H 1.09002 * 109.47242 * 185.00435 * 4 3 2 30 30 H 1.08998 * 109.47337 * 16.70882 * 6 5 4 31 31 H 1.08997 * 109.47501 * 256.70343 * 6 5 4 32 32 H 0.97003 * 119.99352 * 0.02562 * 10 9 7 33 33 H 1.09001 * 110.48776 * 261.57074 * 17 15 5 34 34 H 1.09004 * 110.48504 * 24.08544 * 17 15 5 35 35 H 1.08999 * 110.75651 * 80.37335 * 18 17 15 36 36 H 1.09005 * 110.75470 * 203.56112 * 18 17 15 37 37 H 1.09000 * 110.48666 * 156.62340 * 19 18 17 38 38 H 1.08998 * 110.48657 * 279.13469 * 19 18 17 39 39 H 1.00906 * 110.99993 * 174.92004 * 22 20 15 40 40 H 1.00899 * 111.00246 * 298.87273 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9779 0.5623 -1.2543 6 6 5.4036 0.2134 -1.1948 7 6 5.6097 -1.1589 -1.7823 8 1 4.8529 -1.9192 -1.6572 9 6 6.7647 -1.4441 -2.4793 10 7 7.6863 -0.5182 -2.6319 11 14 7.0200 -3.1450 -3.2082 12 1 8.3311 -3.1938 -3.9037 13 1 6.9975 -4.1574 -2.1220 14 1 5.9342 -3.4358 -4.1786 15 6 3.6970 1.4347 -2.4023 16 1 3.6944 2.4780 -2.0863 17 6 4.7566 1.2184 -3.5023 18 6 3.9597 1.3343 -4.8254 19 6 2.6187 0.6411 -4.4786 20 6 2.3376 1.0678 -3.0230 21 1 1.6748 1.9329 -3.0089 22 7 1.7298 -0.0451 -2.2813 23 1 -0.3633 0.5137 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6886 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8508 0.5685 0.8427 29 1 3.9784 2.1766 0.0903 30 1 5.7357 0.2178 -0.1566 31 1 5.9802 0.9426 -1.7638 32 1 7.5535 0.3651 -2.2537 33 1 5.5238 1.9909 -3.4502 34 1 5.2054 0.2293 -3.4104 35 1 3.7975 2.3796 -5.0883 36 1 4.4718 0.8096 -5.6320 37 1 1.8258 0.9922 -5.1390 38 1 2.7200 -0.4420 -4.5480 39 1 0.8016 -0.2437 -2.6237 40 1 2.3133 -0.8673 -2.3206 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250168925.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:52 Heat of formation + Delta-G solvation = -32.048347 kcal Electronic energy + Delta-G solvation = -19570.895787 eV Core-core repulsion = 16806.973330 eV Total energy + Delta-G solvation = -2763.922457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.53489 -38.03273 -36.54908 -34.79417 -33.08285 -30.74762 -28.86420 -27.51554 -26.83981 -26.14676 -24.09348 -22.45931 -21.44047 -19.78822 -18.77628 -17.63836 -17.15230 -16.62902 -16.30684 -15.66395 -15.58928 -15.35389 -15.04301 -14.79574 -14.16644 -13.99853 -13.89133 -13.34769 -13.12622 -12.75151 -12.57703 -12.32689 -12.28323 -12.07895 -11.91947 -11.75258 -11.70700 -11.48091 -11.38144 -11.18113 -10.69670 -10.39561 -9.97593 -8.87725 -8.73739 -8.37497 -6.17253 1.55781 1.62634 1.81787 2.60516 3.12996 3.30466 3.49418 3.74969 3.83284 4.08089 4.28255 4.41586 4.44538 4.51391 4.59576 4.64163 4.66049 4.73568 4.83181 4.84122 4.91530 4.95927 4.97772 5.04756 5.11252 5.13000 5.18575 5.24434 5.28995 5.45090 5.76025 6.09119 6.20215 6.54573 6.62653 6.80182 6.84695 6.93651 7.11531 7.56997 8.85880 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022491 B = 0.009145 C = 0.008188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.661981 B = 3061.180656 C = 3418.747389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.362 6.362 3 C 0.104 3.896 4 C 0.058 3.942 5 N -0.496 5.496 6 C 0.171 3.829 7 C -0.565 4.565 8 H 0.044 0.956 9 C -0.029 4.029 10 N -0.940 5.940 11 Si 1.109 2.891 12 H -0.288 1.288 13 H -0.276 1.276 14 H -0.273 1.273 15 C 0.092 3.908 16 H 0.029 0.971 17 C -0.148 4.148 18 C -0.115 4.115 19 C -0.144 4.144 20 C 0.108 3.892 21 H 0.082 0.918 22 N -0.792 5.792 23 H 0.026 0.974 24 H 0.043 0.957 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.027 0.973 30 H -0.024 1.024 31 H 0.004 0.996 32 H 0.254 0.746 33 H 0.026 0.974 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.052 0.948 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.326 0.674 40 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.542 4.213 -0.881 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.280 6.280 3 C 0.026 3.974 4 C -0.071 4.071 5 N -0.221 5.221 6 C 0.045 3.955 7 C -0.604 4.604 8 H 0.062 0.938 9 C -0.226 4.226 10 N -0.580 5.580 11 Si 0.932 3.068 12 H -0.214 1.214 13 H -0.201 1.201 14 H -0.198 1.198 15 C -0.017 4.017 16 H 0.047 0.953 17 C -0.185 4.185 18 C -0.153 4.153 19 C -0.184 4.184 20 C -0.006 4.006 21 H 0.100 0.900 22 N -0.321 5.321 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.045 0.955 30 H -0.006 1.006 31 H 0.021 0.979 32 H 0.064 0.936 33 H 0.045 0.955 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.586 3.157 -1.125 13.993 hybrid contribution -0.140 1.662 0.295 1.694 sum -13.726 4.819 -0.830 14.571 Atomic orbital electron populations 1.22549 0.82068 1.01833 0.98912 1.88040 1.18774 1.26505 1.94648 1.22029 0.91143 0.85871 0.98325 1.22189 0.95996 0.95847 0.93042 1.62033 1.17684 1.41387 1.00948 1.19978 0.85802 0.96290 0.93393 1.22057 1.04845 0.97424 1.36046 0.93762 1.27010 0.92530 1.07296 0.95808 1.70960 1.35909 1.04584 1.46504 0.83016 0.76075 0.71326 0.76338 1.21419 1.20144 1.19830 1.22350 0.95514 0.92782 0.91092 0.95307 1.22912 0.96999 1.03432 0.95206 1.22330 0.96267 1.00532 0.96160 1.23154 0.96971 0.99658 0.98641 1.21972 0.93620 0.95541 0.89425 0.89994 1.59000 1.05111 1.10391 1.57564 0.95594 0.93857 0.90406 0.94635 0.92942 0.93090 0.95516 1.00574 0.97850 0.93554 0.95519 0.88934 0.90768 0.92873 0.90079 0.93091 0.86194 0.84435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.00 10.23 113.37 1.16 2.16 16 2 O -0.36 -11.62 8.21 -148.98 -1.22 -12.84 16 3 C 0.10 3.20 5.22 71.98 0.38 3.57 16 4 C 0.06 2.19 5.07 86.30 0.44 2.63 16 5 N -0.50 -21.23 2.98 -871.29 -2.60 -23.83 16 6 C 0.17 8.95 4.66 85.56 0.40 9.35 16 7 C -0.56 -31.66 7.84 25.60 0.20 -31.46 16 8 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 9 C -0.03 -1.63 4.71 84.65 0.40 -1.23 16 10 N -0.94 -56.72 13.62 21.45 0.29 -56.43 16 11 Si 1.11 50.83 29.90 68.60 2.05 52.88 16 12 H -0.29 -13.30 7.11 99.48 0.71 -12.60 16 13 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 C 0.09 3.48 2.56 45.64 0.12 3.60 16 16 H 0.03 1.07 7.63 -2.39 -0.02 1.05 16 17 C -0.15 -6.24 4.72 31.67 0.15 -6.09 16 18 C -0.11 -3.82 6.91 31.89 0.22 -3.60 16 19 C -0.14 -4.23 6.51 31.67 0.21 -4.02 16 20 C 0.11 3.25 2.82 45.64 0.13 3.37 16 21 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 22 N -0.79 -23.53 3.33 -165.67 -0.55 -24.08 16 23 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 24 H 0.04 0.90 7.46 -2.39 -0.02 0.88 16 25 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.05 1.55 5.51 -2.39 -0.01 1.54 16 28 H 0.05 2.09 7.83 -2.38 -0.02 2.07 16 29 H 0.03 0.98 7.92 -2.39 -0.02 0.96 16 30 H -0.02 -1.32 7.44 -2.39 -0.02 -1.33 16 31 H 0.00 0.20 4.07 -2.39 -0.01 0.19 16 32 H 0.25 15.57 6.49 -92.71 -0.60 14.97 16 33 H 0.03 1.17 7.86 -2.39 -0.02 1.15 16 34 H 0.09 4.73 4.30 -2.38 -0.01 4.72 16 35 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.05 1.81 8.14 -2.38 -0.02 1.79 16 37 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 38 H 0.05 1.66 7.93 -2.39 -0.02 1.64 16 39 H 0.33 7.88 8.45 -89.69 -0.76 7.12 16 40 H 0.34 12.56 8.33 -89.69 -0.75 11.82 16 Total: -1.00 -62.03 296.28 1.46 -60.57 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: -0.31 Total: 25.44 kcal Atomic # 6 Polarization: -25.50 SS G_CDS: 3.79 Total: -21.71 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -2.86 Total: -104.34 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: -1.22 Total: -12.84 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.05 Total: 52.88 kcal Total: -62.03 1.46 -60.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250168925.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.522 kcal (2) G-P(sol) polarization free energy of solvation -62.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds