Wall clock time and date at job start Mon Mar 30 2020 03:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47087 * 2 1 4 4 C 1.46901 * 110.99799 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.49624 * 324.93366 * 4 3 2 6 6 C 1.53046 * 109.49653 * 204.84064 * 4 3 2 7 7 C 1.53035 * 109.53686 * 301.41247 * 6 4 3 8 8 H 1.09005 * 109.49527 * 58.58920 * 7 6 4 9 9 C 1.53002 * 109.49523 * 178.64953 * 7 6 4 10 10 H 1.08994 * 109.47324 * 305.00298 * 9 7 6 11 11 C 1.52999 * 109.46996 * 185.00009 * 9 7 6 12 12 O 1.42898 * 109.47084 * 65.00266 * 9 7 6 13 13 C 1.53192 * 109.31357 * 298.63610 * 7 6 4 14 14 N 1.46927 * 108.77615 * 54.63526 * 13 7 6 15 15 C 1.36935 * 120.62831 * 126.66733 * 14 13 7 16 16 H 1.08006 * 120.00251 * 331.59667 * 15 14 13 17 17 C 1.38805 * 120.00107 * 151.60179 * 15 14 13 18 18 N 1.31622 * 119.99962 * 343.11290 * 17 15 14 19 19 Si 1.86795 * 120.00332 * 163.11747 * 17 15 14 20 20 H 1.48499 * 109.47139 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47582 * 119.99782 * 19 17 15 22 22 H 1.48509 * 109.47245 * 239.99922 * 19 17 15 23 23 C 1.46921 * 118.73648 * 306.39359 * 14 13 7 24 24 H 1.09002 * 109.47063 * 59.99475 * 1 2 3 25 25 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46706 * 299.99751 * 1 2 3 27 27 H 1.09004 * 109.46706 * 240.00249 * 2 1 3 28 28 H 1.08993 * 109.46942 * 120.00318 * 2 1 3 29 29 H 1.00903 * 111.00157 * 56.05178 * 3 2 1 30 30 H 1.08997 * 109.45634 * 61.43689 * 6 4 3 31 31 H 1.08998 * 109.45502 * 181.40177 * 6 4 3 32 32 H 1.09002 * 109.47355 * 60.00120 * 11 9 7 33 33 H 1.09003 * 109.47016 * 180.02562 * 11 9 7 34 34 H 1.09003 * 109.47187 * 300.00064 * 11 9 7 35 35 H 0.96708 * 113.99947 * 59.99650 * 12 9 7 36 36 H 1.08996 * 109.58487 * 294.84473 * 13 7 6 37 37 H 1.08999 * 109.58547 * 174.42615 * 13 7 6 38 38 H 0.96995 * 120.00418 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58367 * 173.39790 * 23 14 13 40 40 H 1.09000 * 109.58729 * 293.67259 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8745 0.5930 0.5894 6 6 3.9642 2.7464 0.6055 7 6 3.3947 3.9143 -0.2031 8 1 2.3059 3.8618 -0.2007 9 6 3.8436 5.2360 0.4235 10 1 3.5575 5.2553 1.4751 11 6 3.1741 6.4008 -0.3086 12 8 5.2632 5.3573 0.3139 13 6 3.9075 3.8306 -1.6442 14 7 3.5801 2.5049 -2.1864 15 6 2.8995 2.3833 -3.3684 16 1 2.2163 3.1594 -3.6806 17 6 3.0875 1.2625 -4.1654 18 7 4.1349 0.4883 -3.9757 19 14 1.8542 0.8530 -5.5072 20 1 0.7743 1.8722 -5.5148 21 1 2.5395 0.8474 -6.8246 22 1 1.2679 -0.4868 -5.2486 23 6 4.0021 1.3122 -1.4394 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6443 1.9013 0.7814 30 1 3.6205 2.8173 1.6374 31 1 5.0532 2.7854 0.5819 32 1 2.0913 6.3083 -0.2250 33 1 3.4943 7.3424 0.1375 34 1 3.4603 6.3815 -1.3602 35 1 5.5896 5.3476 -0.5964 36 1 4.9880 3.9737 -1.6564 37 1 3.4280 4.6010 -2.2480 38 1 4.2666 -0.2947 -4.5329 39 1 3.5849 0.4209 -1.9081 40 1 5.0902 1.2485 -1.4371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000250645123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:48 Heat of formation + Delta-G solvation = -37.203377 kcal Electronic energy + Delta-G solvation = -19187.642249 eV Core-core repulsion = 16423.496253 eV Total energy + Delta-G solvation = -2764.145996 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.93815 -36.69054 -34.63758 -32.81334 -31.11248 -30.41431 -28.63218 -27.11260 -25.27492 -23.42447 -21.87132 -21.53212 -20.27835 -18.49668 -16.74581 -15.98773 -15.35404 -15.07559 -14.70167 -14.36892 -14.05388 -13.91617 -13.32840 -12.85372 -12.76460 -12.54033 -12.39690 -11.92416 -11.74988 -11.36045 -11.17112 -10.95518 -10.86895 -10.79517 -10.63673 -10.40578 -10.35888 -10.10968 -9.94996 -9.77819 -9.45404 -9.14092 -8.35703 -7.60774 -6.49763 -5.66946 -3.06315 3.42898 3.50941 3.53412 4.57793 4.71677 4.78553 5.15265 5.32778 5.41475 5.47873 5.52663 5.62736 5.68943 5.75938 5.79199 5.84864 5.92811 6.08867 6.13857 6.19350 6.26980 6.30949 6.39358 6.48388 6.54774 6.57706 6.61045 6.83728 6.91396 7.07016 7.28654 7.66487 7.85888 7.89910 7.97801 8.12155 8.57987 9.33568 9.97867 10.54726 11.41617 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.009624 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.676037 B = 2908.583821 C = 3695.720992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 N -0.658 5.658 4 C 0.061 3.939 5 H 0.025 0.975 6 C -0.100 4.100 7 C -0.130 4.130 8 H 0.083 0.917 9 C 0.107 3.893 10 H 0.086 0.914 11 C -0.184 4.184 12 O -0.570 6.570 13 C 0.154 3.846 14 N -0.573 5.573 15 C -0.228 4.228 16 H 0.060 0.940 17 C 0.000 4.000 18 N -0.908 5.908 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.294 1.294 22 H -0.291 1.291 23 C 0.184 3.816 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.012 0.988 29 H 0.321 0.679 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.375 0.625 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.250 0.750 39 H 0.088 0.912 40 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.961 4.459 9.332 10.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 N -0.289 5.289 4 C -0.050 4.050 5 H 0.043 0.957 6 C -0.138 4.138 7 C -0.150 4.150 8 H 0.102 0.898 9 C 0.047 3.953 10 H 0.104 0.896 11 C -0.241 4.241 12 O -0.377 6.377 13 C 0.028 3.972 14 N -0.294 5.294 15 C -0.358 4.358 16 H 0.078 0.922 17 C -0.198 4.198 18 N -0.554 5.554 19 Si 0.728 3.272 20 H -0.204 1.204 21 H -0.221 1.221 22 H -0.218 1.218 23 C 0.058 3.942 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.031 0.969 29 H 0.138 0.862 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.224 0.776 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.106 0.894 40 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -3.019 4.404 9.167 10.609 hybrid contribution -0.500 -0.687 -0.345 0.917 sum -3.520 3.717 8.822 10.200 Atomic orbital electron populations 1.21728 0.95844 1.00792 1.01949 1.21883 0.94885 0.90480 0.99808 1.60401 1.08069 1.12274 1.48187 1.22357 0.87261 0.94943 1.00483 0.95710 1.21529 1.00719 0.94807 0.96715 1.22240 1.01697 0.92936 0.98164 0.89845 1.21942 0.80424 0.93673 0.99243 0.89634 1.22504 1.01394 0.98648 1.01568 1.86468 1.21726 1.96432 1.33072 1.20853 0.95736 0.89653 0.91006 1.43671 1.65164 0.98718 1.21806 1.19103 1.15912 1.05376 0.95445 0.92190 1.24923 0.96894 1.00174 0.97781 1.70033 1.26441 1.17500 1.41396 0.86293 0.81256 0.78008 0.81637 1.20416 1.22093 1.21840 1.20742 0.94877 0.92371 0.86241 0.91634 0.93047 0.93655 0.90703 0.96941 0.86210 0.94134 0.91643 0.91825 0.92752 0.91823 0.77577 0.97054 0.92994 0.94015 0.89412 0.96598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 10.17 37.16 0.38 -1.75 16 2 C 0.06 1.00 6.20 -3.82 -0.02 0.98 16 3 N -0.66 -11.92 5.46 -106.60 -0.58 -12.50 16 4 C 0.06 1.16 2.85 -67.59 -0.19 0.97 16 5 H 0.03 0.47 7.80 -51.93 -0.41 0.06 16 6 C -0.10 -1.70 4.44 -26.69 -0.12 -1.82 16 7 C -0.13 -2.17 2.01 -90.50 -0.18 -2.36 16 8 H 0.08 1.48 7.37 -51.93 -0.38 1.10 16 9 C 0.11 1.52 3.34 -26.73 -0.09 1.43 16 10 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 11 C -0.18 -2.34 9.30 37.16 0.35 -2.00 16 12 O -0.57 -8.68 12.80 -35.23 -0.45 -9.13 16 13 C 0.15 3.11 5.13 -3.71 -0.02 3.09 16 14 N -0.57 -14.03 2.91 -172.33 -0.50 -14.53 16 15 C -0.23 -6.24 9.58 -15.06 -0.14 -6.38 16 16 H 0.06 1.64 7.89 -52.48 -0.41 1.23 16 17 C 0.00 -0.01 4.92 -17.43 -0.09 -0.10 16 18 N -0.91 -26.43 11.20 55.49 0.62 -25.80 16 19 Si 0.90 22.09 29.59 -169.99 -5.03 17.06 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 23 C 0.18 4.39 4.85 -3.72 -0.02 4.37 16 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 1.48 7.37 -51.93 -0.38 1.10 16 28 H 0.01 0.20 8.06 -51.93 -0.42 -0.22 16 29 H 0.32 5.16 8.14 -39.29 -0.32 4.84 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.06 1.17 7.86 -51.93 -0.41 0.76 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.84 6.70 -51.93 -0.35 0.49 16 35 H 0.38 5.16 7.08 45.56 0.32 5.48 16 36 H 0.01 0.24 6.45 -51.93 -0.34 -0.10 16 37 H 0.05 1.04 6.66 -51.93 -0.35 0.69 16 38 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.09 2.37 5.29 -51.93 -0.27 2.09 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 306.16 15.07 4.61 4.61 Total: -1.00 -29.42 306.16 -7.71 -37.13 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -6.23 Total: 6.74 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.57 kcal Atomic # 7 Polarization: -52.37 SS G_CDS: -0.46 Total: -52.84 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -0.45 Total: -9.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.42 -7.71 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250645123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.077 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds