Wall clock time and date at job start Mon Mar 30 2020 03:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47087 * 2 1 4 4 C 1.46901 * 110.99799 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.49624 * 324.93366 * 4 3 2 6 6 C 1.53046 * 109.49653 * 204.84064 * 4 3 2 7 7 C 1.53035 * 109.53686 * 301.41247 * 6 4 3 8 8 H 1.09005 * 109.49527 * 58.58920 * 7 6 4 9 9 C 1.53002 * 109.49523 * 178.64953 * 7 6 4 10 10 H 1.08994 * 109.47324 * 305.00298 * 9 7 6 11 11 C 1.52999 * 109.46996 * 185.00009 * 9 7 6 12 12 O 1.42898 * 109.47084 * 65.00266 * 9 7 6 13 13 C 1.53192 * 109.31357 * 298.63610 * 7 6 4 14 14 N 1.46927 * 108.77615 * 54.63526 * 13 7 6 15 15 C 1.36935 * 120.62831 * 126.66733 * 14 13 7 16 16 H 1.08006 * 120.00251 * 331.59667 * 15 14 13 17 17 C 1.38805 * 120.00107 * 151.60179 * 15 14 13 18 18 N 1.31622 * 119.99962 * 343.11290 * 17 15 14 19 19 Si 1.86795 * 120.00332 * 163.11747 * 17 15 14 20 20 H 1.48499 * 109.47139 * 359.97438 * 19 17 15 21 21 H 1.48503 * 109.47582 * 119.99782 * 19 17 15 22 22 H 1.48509 * 109.47245 * 239.99922 * 19 17 15 23 23 C 1.46921 * 118.73648 * 306.39359 * 14 13 7 24 24 H 1.09002 * 109.47063 * 59.99475 * 1 2 3 25 25 H 1.08994 * 109.47343 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46706 * 299.99751 * 1 2 3 27 27 H 1.09004 * 109.46706 * 240.00249 * 2 1 3 28 28 H 1.08993 * 109.46942 * 120.00318 * 2 1 3 29 29 H 1.00903 * 111.00157 * 56.05178 * 3 2 1 30 30 H 1.08997 * 109.45634 * 61.43689 * 6 4 3 31 31 H 1.08998 * 109.45502 * 181.40177 * 6 4 3 32 32 H 1.09002 * 109.47355 * 60.00120 * 11 9 7 33 33 H 1.09003 * 109.47016 * 180.02562 * 11 9 7 34 34 H 1.09003 * 109.47187 * 300.00064 * 11 9 7 35 35 H 0.96708 * 113.99947 * 59.99650 * 12 9 7 36 36 H 1.08996 * 109.58487 * 294.84473 * 13 7 6 37 37 H 1.08999 * 109.58547 * 174.42615 * 13 7 6 38 38 H 0.96995 * 120.00418 * 180.02562 * 18 17 15 39 39 H 1.09002 * 109.58367 * 173.39790 * 23 14 13 40 40 H 1.09000 * 109.58729 * 293.67259 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 -0.0006 5 1 3.8745 0.5930 0.5894 6 6 3.9642 2.7464 0.6055 7 6 3.3947 3.9143 -0.2031 8 1 2.3059 3.8618 -0.2007 9 6 3.8436 5.2360 0.4235 10 1 3.5575 5.2553 1.4751 11 6 3.1741 6.4008 -0.3086 12 8 5.2632 5.3573 0.3139 13 6 3.9075 3.8306 -1.6442 14 7 3.5801 2.5049 -2.1864 15 6 2.8995 2.3833 -3.3684 16 1 2.2163 3.1594 -3.6806 17 6 3.0875 1.2625 -4.1654 18 7 4.1349 0.4883 -3.9757 19 14 1.8542 0.8530 -5.5072 20 1 0.7743 1.8722 -5.5148 21 1 2.5395 0.8474 -6.8246 22 1 1.2679 -0.4868 -5.2486 23 6 4.0021 1.3122 -1.4394 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6443 1.9013 0.7814 30 1 3.6205 2.8173 1.6374 31 1 5.0532 2.7854 0.5819 32 1 2.0913 6.3083 -0.2250 33 1 3.4943 7.3424 0.1375 34 1 3.4603 6.3815 -1.3602 35 1 5.5896 5.3476 -0.5964 36 1 4.9880 3.9737 -1.6564 37 1 3.4280 4.6010 -2.2480 38 1 4.2666 -0.2947 -4.5329 39 1 3.5849 0.4209 -1.9081 40 1 5.0902 1.2485 -1.4371 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000250645123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:48 Heat of formation + Delta-G solvation = -58.412868 kcal Electronic energy + Delta-G solvation = -19188.561961 eV Core-core repulsion = 16423.496253 eV Total energy + Delta-G solvation = -2765.065709 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39724 -38.04470 -36.30346 -34.46503 -32.44166 -32.25327 -29.93506 -28.64819 -27.21090 -24.75997 -23.67715 -22.88845 -21.68820 -20.11251 -18.58052 -17.43250 -16.83120 -16.58069 -16.28935 -15.82397 -15.74846 -15.35670 -14.59496 -14.47836 -14.34057 -14.19572 -13.71611 -13.50191 -12.93467 -12.81160 -12.72470 -12.62945 -12.57546 -12.24864 -12.20149 -12.01551 -11.90171 -11.85704 -11.48935 -11.42080 -11.05433 -10.52717 -10.45823 -9.07215 -8.50725 -7.77300 -5.19203 1.44817 1.47505 1.57049 2.55844 3.34302 3.39785 3.55507 3.80852 3.94695 4.03460 4.21195 4.26669 4.34042 4.47685 4.51303 4.57922 4.66021 4.67731 4.75415 4.86818 4.94017 5.04100 5.07306 5.13865 5.18627 5.23322 5.30769 5.35435 5.41447 5.50426 5.63000 5.69625 5.78242 6.31659 6.49244 6.80273 6.85251 7.25104 7.98660 8.49733 9.28083 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.009624 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.676037 B = 2908.583821 C = 3695.720992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 N -0.669 5.669 4 C 0.071 3.929 5 H 0.030 0.970 6 C -0.094 4.094 7 C -0.115 4.115 8 H 0.080 0.920 9 C 0.113 3.887 10 H 0.104 0.896 11 C -0.179 4.179 12 O -0.579 6.579 13 C 0.151 3.849 14 N -0.588 5.588 15 C -0.231 4.231 16 H 0.058 0.942 17 C -0.052 4.052 18 N -0.939 5.939 19 Si 0.955 3.045 20 H -0.269 1.269 21 H -0.296 1.296 22 H -0.296 1.296 23 C 0.192 3.808 24 H 0.044 0.956 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.035 0.965 28 H 0.031 0.969 29 H 0.339 0.661 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.380 0.620 36 H 0.011 0.989 37 H 0.051 0.949 38 H 0.244 0.756 39 H 0.050 0.950 40 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.284 5.729 11.122 13.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.069 4.069 3 N -0.302 5.302 4 C -0.040 4.040 5 H 0.048 0.952 6 C -0.132 4.132 7 C -0.135 4.135 8 H 0.098 0.902 9 C 0.054 3.946 10 H 0.122 0.878 11 C -0.237 4.237 12 O -0.387 6.387 13 C 0.026 3.974 14 N -0.310 5.310 15 C -0.362 4.362 16 H 0.076 0.924 17 C -0.246 4.246 18 N -0.587 5.587 19 Si 0.785 3.215 20 H -0.193 1.193 21 H -0.223 1.223 22 H -0.223 1.223 23 C 0.066 3.934 24 H 0.063 0.937 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.158 0.842 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.229 0.771 36 H 0.029 0.971 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.069 0.931 40 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges -4.356 5.709 10.982 13.121 hybrid contribution -0.054 -1.054 -0.895 1.384 sum -4.410 4.655 10.087 11.952 Atomic orbital electron populations 1.21656 0.93755 1.01973 1.02042 1.21840 0.96548 0.89759 0.98762 1.60228 1.07263 1.13296 1.49408 1.22053 0.88148 0.96667 0.97139 0.95170 1.21482 1.00136 0.93353 0.98180 1.22063 1.01176 0.94602 0.95673 0.90207 1.21952 0.80062 0.92460 1.00147 0.87800 1.22456 1.01748 0.98636 1.00845 1.86460 1.22283 1.96352 1.33598 1.21007 0.95815 0.87422 0.93200 1.43875 1.65136 1.00457 1.21482 1.19352 1.15565 1.05079 0.96161 0.92401 1.25573 0.98406 1.00508 1.00131 1.70183 1.28113 1.17861 1.42514 0.85370 0.79462 0.77540 0.79093 1.19312 1.22317 1.22285 1.20489 0.92943 0.90964 0.89042 0.93686 0.91416 0.91262 0.94592 0.95067 0.84230 0.91018 0.92574 0.91036 0.91290 0.92771 0.77086 0.97110 0.93041 0.94662 0.93141 0.99580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 10.17 71.98 0.73 -3.00 16 2 C 0.06 1.99 6.20 86.31 0.54 2.53 16 3 N -0.67 -23.30 5.46 -491.16 -2.68 -25.98 16 4 C 0.07 2.67 2.85 44.99 0.13 2.80 16 5 H 0.03 1.11 7.80 -2.38 -0.02 1.09 16 6 C -0.09 -2.98 4.44 30.62 0.14 -2.84 16 7 C -0.11 -3.60 2.01 -10.72 -0.02 -3.62 16 8 H 0.08 2.62 7.37 -2.38 -0.02 2.60 16 9 C 0.11 2.88 3.34 30.59 0.10 2.98 16 10 H 0.10 2.36 8.14 -2.39 -0.02 2.34 16 11 C -0.18 -4.05 9.30 71.98 0.67 -3.38 16 12 O -0.58 -16.25 12.80 -148.98 -1.91 -18.16 16 13 C 0.15 6.00 5.13 86.36 0.44 6.45 16 14 N -0.59 -29.23 2.91 -699.13 -2.04 -31.27 16 15 C -0.23 -12.79 9.58 84.03 0.81 -11.99 16 16 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 17 C -0.05 -2.96 4.92 84.86 0.42 -2.54 16 18 N -0.94 -56.74 11.20 21.65 0.24 -56.50 16 19 Si 0.96 46.34 29.59 68.60 2.03 48.37 16 20 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 21 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 23 C 0.19 9.45 4.85 86.36 0.42 9.86 16 24 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 26 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 27 H 0.04 1.46 7.37 -2.38 -0.02 1.44 16 28 H 0.03 0.92 8.06 -2.39 -0.02 0.90 16 29 H 0.34 9.85 8.14 -89.69 -0.73 9.12 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.06 1.91 7.86 -2.39 -0.02 1.89 16 32 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.05 1.32 6.70 -2.39 -0.02 1.30 16 35 H 0.38 9.87 7.08 -74.05 -0.52 9.34 16 36 H 0.01 0.45 6.45 -2.39 -0.02 0.43 16 37 H 0.05 2.02 6.66 -2.39 -0.02 2.01 16 38 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 39 H 0.05 2.85 5.29 -2.39 -0.01 2.84 16 40 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 Total: -1.00 -64.52 306.16 -0.22 -64.75 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -0.23 Total: 21.54 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: 4.37 Total: -2.76 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -4.48 Total: -113.74 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -1.91 Total: -18.16 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -64.52 -0.22 -64.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000250645123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.334 kcal (2) G-P(sol) polarization free energy of solvation -64.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds