Wall clock time and date at job start Mon Mar 30 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47403 * 2 1 4 4 C 1.47011 * 111.00081 * 293.95202 * 3 2 1 5 5 C 1.53098 * 109.26128 * 177.60742 * 4 3 2 6 6 O 1.43010 * 109.25594 * 56.84650 * 5 4 3 7 7 C 1.43016 * 113.74272 * 301.32918 * 6 5 4 8 8 H 1.08996 * 109.50742 * 298.69884 * 7 6 5 9 9 C 1.53001 * 109.50751 * 178.60482 * 7 6 5 10 10 N 1.46902 * 109.46941 * 65.09113 * 9 7 6 11 11 C 1.46895 * 110.99778 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47613 * 35.00248 * 11 10 9 13 13 C 1.52997 * 109.47514 * 274.99856 * 11 10 9 14 14 C 1.50706 * 109.47182 * 154.99902 * 11 10 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 11 10 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47154 * 89.99418 * 18 16 14 20 20 H 1.48493 * 109.47010 * 209.99942 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99638 * 18 16 14 22 22 C 1.47019 * 110.99841 * 170.27008 * 3 2 1 23 23 H 1.08997 * 109.47404 * 300.00497 * 1 2 3 24 24 H 1.09004 * 109.47024 * 59.99915 * 1 2 3 25 25 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47404 * 239.99503 * 2 1 3 27 27 H 1.09004 * 109.47024 * 120.00085 * 2 1 3 28 28 H 1.08998 * 109.50990 * 57.66885 * 4 3 2 29 29 H 1.08999 * 109.50671 * 297.54049 * 4 3 2 30 30 H 1.08997 * 109.50234 * 296.91364 * 5 4 3 31 31 H 1.08998 * 109.54547 * 176.80446 * 5 4 3 32 32 H 1.08993 * 109.47516 * 305.09050 * 9 7 6 33 33 H 1.09001 * 109.47020 * 185.08600 * 9 7 6 34 34 H 1.00900 * 111.00117 * 303.95170 * 10 9 7 35 35 H 1.08995 * 109.47505 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47000 * 300.00767 * 13 11 10 37 37 H 1.09002 * 109.46917 * 59.99987 * 13 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46947 * 62.43972 * 22 3 2 40 40 H 1.08997 * 109.54335 * 302.30822 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 -1.2543 5 6 2.1454 3.5212 -1.1877 6 8 3.5522 3.5461 -0.9317 7 6 3.9282 2.8908 0.2826 8 1 3.4555 3.3912 1.1277 9 6 5.4489 2.9445 0.4424 10 7 5.8748 4.3406 0.6089 11 6 7.3324 4.4310 0.7662 12 1 7.8122 3.6679 0.1533 13 6 7.7016 4.2122 2.2347 14 6 7.8013 5.7947 0.3282 15 1 7.0876 6.5215 -0.0306 16 6 9.1404 6.1166 0.3914 17 7 10.0087 5.2336 0.8344 18 14 9.7215 7.8071 -0.1507 19 1 9.6987 8.7339 1.0093 20 1 11.1058 7.7088 -0.6788 21 1 8.8215 8.3224 -1.2137 22 6 3.4707 1.4306 0.2320 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5891 2.0439 -1.3924 29 1 2.1554 1.5637 -2.0902 30 1 1.6202 4.0394 -0.3854 31 1 1.9393 4.0160 -2.1368 32 1 5.9226 2.5235 -0.4443 33 1 5.7426 2.3680 1.3197 34 1 5.5579 4.9096 -0.1617 35 1 8.7832 4.2798 2.3515 36 1 7.2219 4.9753 2.8475 37 1 7.3626 3.2259 2.5514 38 1 10.9508 5.4601 0.8792 39 1 3.9848 0.9161 -0.5799 40 1 3.7042 0.9430 1.1784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252947049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:36 Heat of formation + Delta-G solvation = -45.179074 kcal Electronic energy + Delta-G solvation = -18030.690904 eV Core-core repulsion = 15266.199056 eV Total energy + Delta-G solvation = -2764.491848 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.65224 -36.42343 -35.51497 -32.92721 -31.38769 -30.90778 -28.59166 -26.69298 -25.16755 -24.19289 -23.07568 -21.06841 -20.32234 -19.61822 -16.68351 -16.30087 -16.18866 -15.42281 -15.06070 -14.86532 -14.59778 -14.10168 -13.77589 -13.52075 -13.18207 -12.80254 -12.28751 -12.15865 -11.97440 -11.69238 -11.58970 -11.29373 -11.08055 -10.95441 -10.74523 -10.65738 -10.50467 -10.14530 -10.07796 -9.78549 -9.42328 -8.76014 -8.49113 -8.42082 -7.18715 -5.97480 -4.03295 3.33908 3.39735 3.43729 3.65234 3.97070 4.44792 4.69728 4.85769 4.91777 5.02873 5.18104 5.24157 5.25638 5.33862 5.37592 5.47274 5.56808 5.65064 5.69030 5.73612 5.81114 5.87412 5.96504 6.05565 6.31028 6.45426 6.84907 6.85947 6.93111 7.18942 7.28655 7.42669 7.56191 7.84278 7.96765 8.33930 8.47874 8.75826 9.08366 9.62342 11.08926 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049520 B = 0.004414 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.297572 B = 6341.653795 C = 6744.159185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.538 5.538 4 C 0.016 3.984 5 C 0.065 3.935 6 O -0.376 6.376 7 C 0.098 3.902 8 H 0.074 0.926 9 C 0.071 3.929 10 N -0.686 5.686 11 C 0.210 3.790 12 H 0.000 1.000 13 C -0.125 4.125 14 C -0.515 4.515 15 H 0.060 0.940 16 C 0.060 3.940 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.274 1.274 22 C 0.025 3.975 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.094 0.906 32 H 0.025 0.975 33 H 0.076 0.924 34 H 0.339 0.661 35 H 0.081 0.919 36 H 0.031 0.969 37 H 0.003 0.997 38 H 0.260 0.740 39 H 0.041 0.959 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.501 -9.378 -2.550 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.112 4.112 5 C -0.013 4.013 6 O -0.295 6.295 7 C 0.039 3.961 8 H 0.092 0.908 9 C -0.060 4.060 10 N -0.317 5.317 11 C 0.103 3.897 12 H 0.018 0.982 13 C -0.183 4.183 14 C -0.554 4.554 15 H 0.078 0.922 16 C -0.141 4.141 17 N -0.531 5.531 18 Si 0.725 3.275 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.104 4.104 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.043 0.957 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.099 0.901 36 H 0.050 0.950 37 H 0.022 0.978 38 H 0.070 0.930 39 H 0.059 0.941 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -16.504 -9.058 -1.577 18.893 hybrid contribution 0.859 0.018 -1.668 1.877 sum -15.645 -9.040 -3.245 18.358 Atomic orbital electron populations 1.21794 0.94845 1.01462 1.02487 1.22092 0.96092 0.88811 1.00852 1.62230 1.13898 1.15813 1.34360 1.22850 1.01347 0.96343 0.90706 1.22575 0.82771 0.94354 1.01562 1.88036 1.22241 1.77369 1.41842 1.22314 0.96423 0.89954 0.87370 0.90842 1.21860 0.90602 0.93872 0.99663 1.60709 1.16650 1.05914 1.48477 1.19112 0.81077 0.96147 0.93414 0.98248 1.21722 1.03048 0.95893 0.97626 1.21287 0.92598 0.98854 1.42638 0.92174 1.24921 0.96713 0.97223 0.95236 1.69900 1.02271 1.34212 1.46711 0.86513 0.77811 0.84298 0.78875 1.20645 1.21332 1.19907 1.22801 0.87117 0.98675 1.01769 0.91750 0.92750 0.92343 0.94987 0.90642 0.89771 0.94219 0.92435 0.88790 0.95710 0.90558 0.84361 0.90074 0.94965 0.97809 0.93006 0.94079 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.84 37.16 0.37 -0.82 16 2 C 0.05 0.48 5.68 -3.83 -0.02 0.46 16 3 N -0.54 -6.43 4.73 -234.31 -1.11 -7.53 16 4 C 0.02 0.18 5.43 -3.71 -0.02 0.16 16 5 C 0.06 0.81 7.01 37.21 0.26 1.07 16 6 O -0.38 -6.22 9.99 -35.23 -0.35 -6.57 16 7 C 0.10 1.56 3.04 -26.68 -0.08 1.48 16 8 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 9 C 0.07 1.33 5.19 -3.82 -0.02 1.31 16 10 N -0.69 -15.47 6.30 -107.95 -0.68 -16.15 16 11 C 0.21 5.52 2.61 -68.87 -0.18 5.34 16 12 H 0.00 0.00 7.80 -51.93 -0.41 -0.41 16 13 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 14 C -0.52 -14.60 8.60 -34.44 -0.30 -14.90 16 15 H 0.06 1.69 7.62 -52.49 -0.40 1.29 16 16 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 17 N -0.89 -25.99 11.30 55.43 0.63 -25.36 16 18 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 22 C 0.02 0.33 4.93 -3.71 -0.02 0.31 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.05 0.42 6.51 -51.93 -0.34 0.08 16 25 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.31 8.12 -51.93 -0.42 -0.11 16 27 H 0.08 0.69 8.04 -51.93 -0.42 0.28 16 28 H 0.08 0.78 6.37 -51.93 -0.33 0.44 16 29 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 32 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 33 H 0.08 1.39 7.43 -51.93 -0.39 1.01 16 34 H 0.34 7.78 7.79 -39.29 -0.31 7.47 16 35 H 0.08 2.24 6.05 -51.93 -0.31 1.92 16 36 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 38 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 40 H 0.09 1.05 8.09 -51.93 -0.42 0.63 16 LS Contribution 312.77 15.07 4.71 4.71 Total: -1.00 -29.78 312.77 -8.65 -38.43 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: -7.06 Total: 2.57 kcal Atomic # 6 Polarization: -7.04 SS G_CDS: 0.24 Total: -6.80 kcal Atomic # 7 Polarization: -47.88 SS G_CDS: -1.16 Total: -49.04 kcal Atomic # 8 Polarization: -6.22 SS G_CDS: -0.35 Total: -6.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.78 -8.65 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252947049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.748 kcal (2) G-P(sol) polarization free energy of solvation -29.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds