Wall clock time and date at job start Mon Mar 30 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46897 * 109.47403 * 2 1 4 4 C 1.47011 * 111.00081 * 293.95202 * 3 2 1 5 5 C 1.53098 * 109.26128 * 177.60742 * 4 3 2 6 6 O 1.43010 * 109.25594 * 56.84650 * 5 4 3 7 7 C 1.43016 * 113.74272 * 301.32918 * 6 5 4 8 8 H 1.08996 * 109.50742 * 298.69884 * 7 6 5 9 9 C 1.53001 * 109.50751 * 178.60482 * 7 6 5 10 10 N 1.46902 * 109.46941 * 65.09113 * 9 7 6 11 11 C 1.46895 * 110.99778 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47613 * 35.00248 * 11 10 9 13 13 C 1.52997 * 109.47514 * 274.99856 * 11 10 9 14 14 C 1.50706 * 109.47182 * 154.99902 * 11 10 9 15 15 H 1.08000 * 119.99302 * 0.02562 * 14 11 10 16 16 C 1.37871 * 120.00436 * 179.72677 * 14 11 10 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 11 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 11 19 19 H 1.48497 * 109.47154 * 89.99418 * 18 16 14 20 20 H 1.48493 * 109.47010 * 209.99942 * 18 16 14 21 21 H 1.48502 * 109.46736 * 329.99638 * 18 16 14 22 22 C 1.47019 * 110.99841 * 170.27008 * 3 2 1 23 23 H 1.08997 * 109.47404 * 300.00497 * 1 2 3 24 24 H 1.09004 * 109.47024 * 59.99915 * 1 2 3 25 25 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47404 * 239.99503 * 2 1 3 27 27 H 1.09004 * 109.47024 * 120.00085 * 2 1 3 28 28 H 1.08998 * 109.50990 * 57.66885 * 4 3 2 29 29 H 1.08999 * 109.50671 * 297.54049 * 4 3 2 30 30 H 1.08997 * 109.50234 * 296.91364 * 5 4 3 31 31 H 1.08998 * 109.54547 * 176.80446 * 5 4 3 32 32 H 1.08993 * 109.47516 * 305.09050 * 9 7 6 33 33 H 1.09001 * 109.47020 * 185.08600 * 9 7 6 34 34 H 1.00900 * 111.00117 * 303.95170 * 10 9 7 35 35 H 1.08995 * 109.47505 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.47000 * 300.00767 * 13 11 10 37 37 H 1.09002 * 109.46917 * 59.99987 * 13 11 10 38 38 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 39 39 H 1.09001 * 109.46947 * 62.43972 * 22 3 2 40 40 H 1.08997 * 109.54335 * 302.30822 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6700 2.0674 -1.2543 5 6 2.1454 3.5212 -1.1877 6 8 3.5522 3.5461 -0.9317 7 6 3.9282 2.8908 0.2826 8 1 3.4555 3.3912 1.1277 9 6 5.4489 2.9445 0.4424 10 7 5.8748 4.3406 0.6089 11 6 7.3324 4.4310 0.7662 12 1 7.8122 3.6679 0.1533 13 6 7.7016 4.2122 2.2347 14 6 7.8013 5.7947 0.3282 15 1 7.0876 6.5215 -0.0306 16 6 9.1404 6.1166 0.3914 17 7 10.0087 5.2336 0.8344 18 14 9.7215 7.8071 -0.1507 19 1 9.6987 8.7339 1.0093 20 1 11.1058 7.7088 -0.6788 21 1 8.8215 8.3224 -1.2137 22 6 3.4707 1.4306 0.2320 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 0.5891 2.0439 -1.3924 29 1 2.1554 1.5637 -2.0902 30 1 1.6202 4.0394 -0.3854 31 1 1.9393 4.0160 -2.1368 32 1 5.9226 2.5235 -0.4443 33 1 5.7426 2.3680 1.3197 34 1 5.5579 4.9096 -0.1617 35 1 8.7832 4.2798 2.3515 36 1 7.2219 4.9753 2.8475 37 1 7.3626 3.2259 2.5514 38 1 10.9508 5.4601 0.8792 39 1 3.9848 0.9161 -0.5799 40 1 3.7042 0.9430 1.1784 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252947049.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:35 Heat of formation + Delta-G solvation = -66.925154 kcal Electronic energy + Delta-G solvation = -18031.633885 eV Core-core repulsion = 15266.199056 eV Total energy + Delta-G solvation = -2765.434829 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.74534 -37.86202 -36.95161 -34.76498 -32.84381 -31.82139 -30.23952 -28.02250 -27.23246 -25.41097 -24.17415 -22.20632 -21.73901 -21.25600 -18.59339 -17.53929 -17.35592 -16.80879 -16.48615 -16.10885 -15.85296 -15.46200 -15.17787 -14.81563 -14.66112 -14.33282 -13.56766 -13.53999 -13.05893 -12.92408 -12.88548 -12.72656 -12.59309 -12.51059 -12.34441 -12.18857 -12.09608 -11.88122 -11.72749 -11.34247 -10.88619 -10.57803 -10.55538 -9.42286 -9.07360 -8.13228 -6.27508 1.42463 1.43409 1.54084 2.41897 2.71361 2.84023 3.14894 3.52616 3.93325 3.97491 4.05122 4.14737 4.17938 4.31940 4.35166 4.53834 4.54219 4.61474 4.65241 4.69069 4.78366 4.86181 4.90988 5.03761 5.05796 5.08418 5.08901 5.21715 5.34547 5.47825 5.66767 5.86581 5.91270 6.01333 6.22932 6.27006 6.47278 6.76464 6.98694 7.42699 8.92499 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.049520 B = 0.004414 C = 0.004151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.297572 B = 6341.653795 C = 6744.159185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.545 5.545 4 C 0.019 3.981 5 C 0.058 3.942 6 O -0.404 6.404 7 C 0.108 3.892 8 H 0.066 0.934 9 C 0.072 3.928 10 N -0.683 5.683 11 C 0.213 3.787 12 H -0.032 1.032 13 C -0.113 4.113 14 C -0.539 4.539 15 H 0.057 0.943 16 C 0.013 3.987 17 N -0.918 5.918 18 Si 0.965 3.035 19 H -0.274 1.274 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.033 3.967 23 H 0.059 0.941 24 H 0.057 0.943 25 H 0.074 0.926 26 H 0.033 0.967 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.012 0.988 33 H 0.082 0.918 34 H 0.335 0.665 35 H 0.058 0.942 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.263 0.737 39 H 0.035 0.965 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 -9.464 -2.799 20.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.271 5.271 4 C -0.109 4.109 5 C -0.018 4.018 6 O -0.323 6.323 7 C 0.049 3.951 8 H 0.084 0.916 9 C -0.058 4.058 10 N -0.313 5.313 11 C 0.105 3.895 12 H -0.015 1.015 13 C -0.171 4.171 14 C -0.578 4.578 15 H 0.075 0.925 16 C -0.186 4.186 17 N -0.557 5.557 18 Si 0.790 3.210 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.193 1.193 22 C -0.096 4.096 23 H 0.078 0.922 24 H 0.076 0.924 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.126 0.874 29 H 0.053 0.947 30 H 0.077 0.923 31 H 0.130 0.870 32 H 0.031 0.969 33 H 0.101 0.899 34 H 0.152 0.848 35 H 0.077 0.923 36 H 0.047 0.953 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -17.973 -9.160 -1.824 20.255 hybrid contribution 1.259 0.003 -1.608 2.042 sum -16.714 -9.157 -3.432 19.365 Atomic orbital electron populations 1.21762 0.93325 1.02545 1.02419 1.22192 0.97285 0.87423 1.01136 1.62259 1.12579 1.17387 1.34839 1.22854 1.02672 0.95119 0.90211 1.22828 0.80730 0.95733 1.02531 1.87988 1.24806 1.77780 1.41775 1.22068 0.93976 0.91791 0.87218 0.91563 1.21910 0.92921 0.91601 0.99355 1.60648 1.14202 1.08138 1.48335 1.18953 0.82950 0.94471 0.93153 1.01487 1.21541 1.01465 0.96993 0.97121 1.21593 0.93138 0.99718 1.43330 0.92514 1.25747 0.96749 1.01065 0.95084 1.70021 1.02582 1.36012 1.47108 0.85457 0.77369 0.79575 0.78627 1.19942 1.20717 1.19327 1.22648 0.88321 0.96478 1.02173 0.92196 0.92367 0.90750 0.94890 0.90201 0.87358 0.94701 0.92311 0.86954 0.96930 0.89940 0.84814 0.92304 0.95294 0.95643 0.92776 0.94716 0.88518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.84 71.98 0.71 -1.18 16 2 C 0.05 0.80 5.68 86.30 0.49 1.29 16 3 N -0.55 -12.01 4.73 -895.22 -4.23 -16.24 16 4 C 0.02 0.39 5.43 86.31 0.47 0.86 16 5 C 0.06 1.38 7.01 72.01 0.50 1.88 16 6 O -0.40 -13.18 9.99 -148.98 -1.49 -14.67 16 7 C 0.11 3.40 3.04 30.63 0.09 3.49 16 8 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 9 C 0.07 2.75 5.19 86.30 0.45 3.20 16 10 N -0.68 -31.16 6.30 -495.45 -3.12 -34.29 16 11 C 0.21 11.42 2.61 44.17 0.12 11.54 16 12 H -0.03 -1.91 7.80 -2.39 -0.02 -1.93 16 13 C -0.11 -5.80 9.19 71.98 0.66 -5.14 16 14 C -0.54 -30.96 8.60 25.60 0.22 -30.74 16 15 H 0.06 3.22 7.62 -2.91 -0.02 3.19 16 16 C 0.01 0.72 5.30 84.65 0.45 1.17 16 17 N -0.92 -54.02 11.30 21.45 0.24 -53.78 16 18 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 22 C 0.03 0.83 4.93 86.31 0.43 1.26 16 23 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 24 H 0.06 0.72 6.51 -2.38 -0.02 0.71 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 27 H 0.08 1.29 8.04 -2.38 -0.02 1.28 16 28 H 0.11 1.68 6.37 -2.39 -0.02 1.67 16 29 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.01 0.51 8.06 -2.39 -0.02 0.49 16 33 H 0.08 2.99 7.43 -2.39 -0.02 2.98 16 34 H 0.33 15.64 7.79 -89.69 -0.70 14.94 16 35 H 0.06 3.29 6.05 -2.39 -0.01 3.28 16 36 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 37 H 0.02 1.14 7.45 -2.39 -0.02 1.12 16 38 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.10 2.23 8.09 -2.39 -0.02 2.21 16 Total: -1.00 -63.36 312.77 -1.69 -65.05 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.30 Total: 19.73 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 4.58 Total: -12.37 kcal Atomic # 7 Polarization: -97.19 SS G_CDS: -7.11 Total: -104.30 kcal Atomic # 8 Polarization: -13.18 SS G_CDS: -1.49 Total: -14.67 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -63.36 -1.69 -65.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252947049.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.871 kcal (2) G-P(sol) polarization free energy of solvation -63.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds