Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47167 * 2 1 4 4 C 1.47015 * 111.00080 * 293.95788 * 3 2 1 5 5 C 1.53094 * 109.25613 * 182.38813 * 4 3 2 6 6 O 1.43008 * 109.26414 * 303.15127 * 5 4 3 7 7 C 1.43016 * 113.73681 * 58.66774 * 6 5 4 8 8 H 1.08995 * 109.50662 * 61.31574 * 7 6 5 9 9 C 1.53002 * 109.50648 * 181.39802 * 7 6 5 10 10 N 1.46904 * 109.47049 * 299.91456 * 9 7 6 11 11 C 1.46906 * 110.99716 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46825 * 35.00670 * 11 10 9 13 13 C 1.52997 * 109.47302 * 274.99847 * 11 10 9 14 14 C 1.50699 * 109.46750 * 155.00018 * 11 10 9 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46950 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47111 * 120.00373 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00166 * 18 16 14 22 22 C 1.47028 * 110.99530 * 57.63472 * 3 2 1 23 23 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47013 * 299.99697 * 1 2 3 25 25 H 1.09007 * 109.47160 * 59.99702 * 1 2 3 26 26 H 1.08998 * 109.46996 * 240.00359 * 2 1 3 27 27 H 1.08997 * 109.47087 * 120.00192 * 2 1 3 28 28 H 1.08999 * 109.50674 * 62.45606 * 4 3 2 29 29 H 1.08995 * 109.50424 * 302.32616 * 4 3 2 30 30 H 1.09001 * 109.50529 * 183.21457 * 5 4 3 31 31 H 1.08998 * 109.50606 * 63.08867 * 5 4 3 32 32 H 1.08996 * 109.47558 * 179.91545 * 9 7 6 33 33 H 1.09007 * 109.47342 * 59.91364 * 9 7 6 34 34 H 1.00900 * 110.99849 * 56.05147 * 10 9 7 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00356 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00337 * 13 11 10 38 38 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.54010 * 57.69619 * 22 3 2 40 40 H 1.08996 * 109.46934 * 297.56177 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0675 -1.2542 5 6 2.2491 3.4845 -1.2365 6 8 1.7594 4.1801 -0.0869 7 6 2.0827 3.5433 1.1522 8 1 3.1658 3.4937 1.2642 9 6 1.4856 4.3458 2.3100 10 7 2.0413 5.7057 2.3011 11 6 1.4888 6.5072 3.4013 12 1 1.3296 5.8697 4.2709 13 6 0.1558 7.1197 2.9668 14 6 2.4555 7.6077 3.7556 15 1 3.3869 7.7024 3.2170 16 6 2.1506 8.4942 4.7665 17 7 1.0162 8.3791 5.4220 18 14 3.3492 9.8579 5.2062 19 1 4.5428 9.7702 4.3271 20 1 2.6911 11.1755 5.0166 21 1 3.7662 9.7123 6.6240 22 6 1.5025 2.1266 1.1594 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.5853 2.1189 -1.3504 29 1 2.0849 1.5151 -2.0972 30 1 1.9442 4.0137 -2.1393 31 1 3.3370 3.4325 -1.1944 32 1 1.7310 3.8592 3.2540 33 1 0.4025 4.3951 2.1975 34 1 1.8829 6.1551 1.4118 35 1 -0.2538 7.7148 3.7830 36 1 -0.5433 6.3237 2.7105 37 1 0.3152 7.7573 2.0971 38 1 0.8014 9.0031 6.1330 39 1 1.7956 1.6180 2.0778 40 1 0.4153 2.1782 1.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000252947050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -42.501603 kcal Electronic energy + Delta-G solvation = -18178.891517 eV Core-core repulsion = 15414.515773 eV Total energy + Delta-G solvation = -2764.375744 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.76818 -36.56031 -35.60482 -32.89072 -31.22257 -30.78856 -28.42367 -26.66802 -25.09946 -24.43097 -23.20955 -21.27341 -20.16257 -19.80982 -16.53031 -16.33713 -15.98420 -15.45116 -15.14957 -14.77142 -14.63700 -14.04503 -13.77681 -13.51685 -13.11617 -12.78338 -12.52586 -12.12236 -12.02368 -11.61652 -11.54896 -11.36072 -11.20883 -10.90527 -10.80953 -10.68939 -10.38955 -10.30672 -10.06413 -9.75187 -9.43796 -8.90416 -8.44255 -8.30314 -7.12206 -5.92277 -3.94905 3.36140 3.43503 3.49628 3.70019 3.97102 4.49537 4.70811 4.82504 4.91572 5.05011 5.08394 5.17518 5.24142 5.34990 5.39391 5.51278 5.57475 5.65012 5.69297 5.69846 5.81335 5.83911 5.96887 6.07104 6.32436 6.43347 6.77709 6.84597 6.86032 6.94071 7.18820 7.40899 7.46111 7.82333 7.96590 8.35452 8.66160 8.72084 9.13167 9.70302 11.14939 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046311 B = 0.004517 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.466988 B = 6197.864982 C = 6389.773358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.050 3.950 3 N -0.536 5.536 4 C 0.015 3.985 5 C 0.065 3.935 6 O -0.376 6.376 7 C 0.097 3.903 8 H 0.073 0.927 9 C 0.071 3.929 10 N -0.680 5.680 11 C 0.210 3.790 12 H 0.032 0.968 13 C -0.167 4.167 14 C -0.491 4.491 15 H 0.063 0.937 16 C 0.053 3.947 17 N -0.899 5.899 18 Si 0.897 3.103 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C 0.022 3.978 23 H 0.060 0.940 24 H 0.060 0.940 25 H 0.055 0.945 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.043 0.957 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.057 0.943 32 H 0.077 0.923 33 H 0.023 0.977 34 H 0.334 0.666 35 H 0.088 0.912 36 H 0.004 0.996 37 H 0.028 0.972 38 H 0.258 0.742 39 H 0.085 0.915 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.771 -15.022 -11.696 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.078 4.078 3 N -0.260 5.260 4 C -0.113 4.113 5 C -0.013 4.013 6 O -0.295 6.295 7 C 0.039 3.961 8 H 0.091 0.909 9 C -0.060 4.060 10 N -0.311 5.311 11 C 0.102 3.898 12 H 0.050 0.950 13 C -0.227 4.227 14 C -0.530 4.530 15 H 0.081 0.919 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.725 3.275 19 H -0.197 1.197 20 H -0.213 1.213 21 H -0.212 1.212 22 C -0.107 4.107 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.061 0.939 29 H 0.099 0.901 30 H 0.112 0.888 31 H 0.076 0.924 32 H 0.095 0.905 33 H 0.041 0.959 34 H 0.151 0.849 35 H 0.106 0.894 36 H 0.023 0.977 37 H 0.047 0.953 38 H 0.068 0.932 39 H 0.103 0.897 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.128 -14.949 -11.164 18.658 hybrid contribution -1.240 0.585 -0.102 1.375 sum -1.113 -14.364 -11.265 18.289 Atomic orbital electron populations 1.22449 0.98200 1.02278 1.02378 1.22167 0.92980 0.89862 1.02774 1.62429 1.58913 1.02155 1.02470 1.22826 0.99344 0.96403 0.92733 1.22575 0.98561 0.90713 0.89429 1.88014 1.78139 1.49539 1.13781 1.22322 0.99726 0.89581 0.84463 0.90918 1.21863 0.96217 0.92631 0.95296 1.60781 1.61097 1.01181 1.08019 1.19186 0.90680 0.91684 0.88267 0.95040 1.22412 0.99421 0.99344 1.01500 1.21218 1.03912 1.11226 1.16656 0.91877 1.24957 0.95466 0.97909 0.96318 1.69903 1.22790 1.37753 1.23477 0.86456 0.81251 0.81686 0.78094 1.19719 1.21270 1.21196 1.22842 0.98364 0.95446 0.94044 0.92096 0.92074 0.92570 0.90789 0.90490 0.93856 0.90093 0.88840 0.92438 0.90512 0.95899 0.84879 0.89385 0.97704 0.95331 0.93223 0.89661 0.93589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.72 9.20 37.16 0.34 -1.38 16 2 C 0.05 0.47 6.10 -3.82 -0.02 0.44 16 3 N -0.54 -6.26 4.93 -234.31 -1.16 -7.42 16 4 C 0.02 0.16 5.33 -3.71 -0.02 0.14 16 5 C 0.06 0.79 7.01 37.21 0.26 1.05 16 6 O -0.38 -6.09 9.81 -35.23 -0.35 -6.43 16 7 C 0.10 1.54 3.08 -26.68 -0.08 1.46 16 8 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 9 C 0.07 1.32 5.22 -3.82 -0.02 1.30 16 10 N -0.68 -15.23 6.23 -107.95 -0.67 -15.91 16 11 C 0.21 5.45 2.57 -68.86 -0.18 5.27 16 12 H 0.03 0.89 7.80 -51.93 -0.41 0.48 16 13 C -0.17 -4.20 8.94 37.16 0.33 -3.87 16 14 C -0.49 -13.98 8.84 -34.44 -0.30 -14.28 16 15 H 0.06 1.82 7.81 -52.48 -0.41 1.41 16 16 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 17 N -0.90 -26.21 11.32 55.43 0.63 -25.58 16 18 Si 0.90 21.89 29.54 -169.99 -5.02 16.87 16 19 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 C 0.02 0.28 4.42 -3.71 -0.02 0.26 16 23 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.06 0.60 6.42 -51.92 -0.33 0.27 16 25 H 0.06 0.51 6.61 -51.93 -0.34 0.17 16 26 H 0.07 0.60 8.11 -51.93 -0.42 0.18 16 27 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.49 6.59 -51.93 -0.34 0.14 16 29 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.40 8.06 -51.93 -0.42 0.98 16 33 H 0.02 0.44 7.44 -51.93 -0.39 0.05 16 34 H 0.33 7.45 7.87 -39.29 -0.31 7.14 16 35 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 36 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 37 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.05 0.62 6.40 -51.93 -0.33 0.28 16 LS Contribution 309.19 15.07 4.66 4.66 Total: -1.00 -29.74 309.19 -8.63 -38.37 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -6.92 Total: 3.60 kcal Atomic # 6 Polarization: -8.37 SS G_CDS: 0.20 Total: -8.17 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -1.20 Total: -48.90 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.35 Total: -6.43 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.74 -8.63 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252947050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.128 kcal (2) G-P(sol) polarization free energy of solvation -29.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds