Wall clock time and date at job start Mon Mar 30 2020 03:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.47167 * 2 1 4 4 C 1.47015 * 111.00080 * 293.95788 * 3 2 1 5 5 C 1.53094 * 109.25613 * 182.38813 * 4 3 2 6 6 O 1.43008 * 109.26414 * 303.15127 * 5 4 3 7 7 C 1.43016 * 113.73681 * 58.66774 * 6 5 4 8 8 H 1.08995 * 109.50662 * 61.31574 * 7 6 5 9 9 C 1.53002 * 109.50648 * 181.39802 * 7 6 5 10 10 N 1.46904 * 109.47049 * 299.91456 * 9 7 6 11 11 C 1.46906 * 110.99716 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46825 * 35.00670 * 11 10 9 13 13 C 1.52997 * 109.47302 * 274.99847 * 11 10 9 14 14 C 1.50699 * 109.46750 * 155.00018 * 11 10 9 15 15 H 1.08003 * 119.99962 * 0.02562 * 14 11 10 16 16 C 1.37874 * 120.00270 * 179.97438 * 14 11 10 17 17 N 1.31516 * 119.99500 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 120.00390 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.46950 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47111 * 120.00373 * 18 16 14 21 21 H 1.48500 * 109.47074 * 240.00166 * 18 16 14 22 22 C 1.47028 * 110.99530 * 57.63472 * 3 2 1 23 23 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 24 24 H 1.09008 * 109.47013 * 299.99697 * 1 2 3 25 25 H 1.09007 * 109.47160 * 59.99702 * 1 2 3 26 26 H 1.08998 * 109.46996 * 240.00359 * 2 1 3 27 27 H 1.08997 * 109.47087 * 120.00192 * 2 1 3 28 28 H 1.08999 * 109.50674 * 62.45606 * 4 3 2 29 29 H 1.08995 * 109.50424 * 302.32616 * 4 3 2 30 30 H 1.09001 * 109.50529 * 183.21457 * 5 4 3 31 31 H 1.08998 * 109.50606 * 63.08867 * 5 4 3 32 32 H 1.08996 * 109.47558 * 179.91545 * 9 7 6 33 33 H 1.09007 * 109.47342 * 59.91364 * 9 7 6 34 34 H 1.00900 * 110.99849 * 56.05147 * 10 9 7 35 35 H 1.09002 * 109.47153 * 180.02562 * 13 11 10 36 36 H 1.09001 * 109.46832 * 60.00356 * 13 11 10 37 37 H 1.09004 * 109.47261 * 300.00337 * 13 11 10 38 38 H 0.97002 * 119.99804 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.54010 * 57.69619 * 22 3 2 40 40 H 1.08996 * 109.46934 * 297.56177 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6699 2.0675 -1.2542 5 6 2.2491 3.4845 -1.2365 6 8 1.7594 4.1801 -0.0869 7 6 2.0827 3.5433 1.1522 8 1 3.1658 3.4937 1.2642 9 6 1.4856 4.3458 2.3100 10 7 2.0413 5.7057 2.3011 11 6 1.4888 6.5072 3.4013 12 1 1.3296 5.8697 4.2709 13 6 0.1558 7.1197 2.9668 14 6 2.4555 7.6077 3.7556 15 1 3.3869 7.7024 3.2170 16 6 2.1506 8.4942 4.7665 17 7 1.0162 8.3791 5.4220 18 14 3.3492 9.8579 5.2062 19 1 4.5428 9.7702 4.3271 20 1 2.6911 11.1755 5.0166 21 1 3.7662 9.7123 6.6240 22 6 1.5025 2.1266 1.1594 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8899 28 1 0.5853 2.1189 -1.3504 29 1 2.0849 1.5151 -2.0972 30 1 1.9442 4.0137 -2.1393 31 1 3.3370 3.4325 -1.1944 32 1 1.7310 3.8592 3.2540 33 1 0.4025 4.3951 2.1975 34 1 1.8829 6.1551 1.4118 35 1 -0.2538 7.7148 3.7830 36 1 -0.5433 6.3237 2.7105 37 1 0.3152 7.7573 2.0971 38 1 0.8014 9.0031 6.1330 39 1 1.7956 1.6180 2.0778 40 1 0.4153 2.1782 1.1021 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000252947050.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:38 Heat of formation + Delta-G solvation = -64.381564 kcal Electronic energy + Delta-G solvation = -18179.840303 eV Core-core repulsion = 15414.515773 eV Total energy + Delta-G solvation = -2765.324531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.82283 -37.96444 -37.04720 -34.73180 -32.78380 -31.62045 -30.05368 -27.81058 -27.22834 -25.74207 -24.14432 -22.56524 -22.07873 -20.85776 -18.43037 -17.51943 -17.22077 -16.66523 -16.65463 -16.03673 -15.92749 -15.19334 -15.10743 -14.78416 -14.65072 -14.45118 -13.62760 -13.43268 -13.26126 -13.07623 -12.84363 -12.80136 -12.70043 -12.46747 -12.38887 -12.20249 -12.11190 -11.85940 -11.59221 -11.40306 -10.98647 -10.56181 -10.47884 -9.34041 -8.95800 -8.08511 -6.19591 1.43510 1.44773 1.57945 2.45584 2.76404 2.87876 3.19705 3.55436 3.96568 3.98793 4.07541 4.12418 4.23416 4.27749 4.37031 4.45300 4.52552 4.59152 4.64548 4.71241 4.76402 4.83183 4.89168 4.93194 4.99084 5.02673 5.06558 5.12947 5.28781 5.41466 5.69685 5.81785 5.93066 6.03777 6.26441 6.29704 6.66276 6.83190 6.95550 7.50390 8.97534 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046311 B = 0.004517 C = 0.004381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.466988 B = 6197.864982 C = 6389.773358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.019 3.981 5 C 0.058 3.942 6 O -0.401 6.401 7 C 0.107 3.893 8 H 0.062 0.938 9 C 0.073 3.927 10 N -0.683 5.683 11 C 0.214 3.786 12 H 0.004 0.996 13 C -0.154 4.154 14 C -0.514 4.514 15 H 0.054 0.946 16 C 0.008 3.992 17 N -0.923 5.923 18 Si 0.963 3.037 19 H -0.269 1.269 20 H -0.280 1.280 21 H -0.280 1.280 22 C 0.031 3.969 23 H 0.076 0.924 24 H 0.047 0.953 25 H 0.052 0.948 26 H 0.091 0.909 27 H 0.081 0.919 28 H 0.041 0.959 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.019 0.981 34 H 0.334 0.666 35 H 0.063 0.937 36 H 0.021 0.979 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.092 0.908 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.328 -15.886 -12.764 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.109 4.109 5 C -0.019 4.019 6 O -0.321 6.321 7 C 0.049 3.951 8 H 0.079 0.921 9 C -0.058 4.058 10 N -0.313 5.313 11 C 0.105 3.895 12 H 0.022 0.978 13 C -0.213 4.213 14 C -0.553 4.553 15 H 0.072 0.928 16 C -0.190 4.190 17 N -0.564 5.564 18 Si 0.789 3.211 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.098 4.098 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.109 0.891 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.124 0.876 30 H 0.131 0.869 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.037 0.963 34 H 0.152 0.848 35 H 0.082 0.918 36 H 0.040 0.960 37 H 0.048 0.952 38 H 0.070 0.930 39 H 0.110 0.890 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.570 -15.837 -12.250 20.029 hybrid contribution -1.387 0.802 0.183 1.612 sum -0.817 -15.035 -12.067 19.296 Atomic orbital electron populations 1.22402 0.97880 1.03059 1.01526 1.22256 0.93204 0.88416 1.03871 1.62437 1.59198 1.03143 1.02136 1.22832 0.99231 0.95677 0.93175 1.22830 0.98616 0.91800 0.88640 1.87964 1.78597 1.50856 1.14646 1.22066 0.98785 0.90584 0.83682 0.92050 1.21893 0.95982 0.90965 0.96937 1.60664 1.61344 1.02362 1.06943 1.18978 0.90825 0.91189 0.88513 0.97763 1.22218 0.99271 0.99399 1.00424 1.21475 1.04149 1.12440 1.17236 0.92819 1.25736 0.97109 1.00083 0.96073 1.70020 1.24130 1.38537 1.23705 0.85432 0.79097 0.78754 0.77866 1.19358 1.20566 1.20582 1.22660 0.97883 0.93951 0.95307 0.90518 0.93426 0.92872 0.89091 0.90048 0.94094 0.87613 0.86931 0.92554 0.90557 0.96307 0.84845 0.91813 0.95976 0.95223 0.92988 0.88980 0.93967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.96 9.20 71.98 0.66 -2.30 16 2 C 0.05 0.80 6.10 86.30 0.53 1.33 16 3 N -0.54 -11.64 4.93 -895.21 -4.42 -16.06 16 4 C 0.02 0.36 5.33 86.31 0.46 0.82 16 5 C 0.06 1.33 7.01 72.01 0.50 1.83 16 6 O -0.40 -12.71 9.81 -148.98 -1.46 -14.17 16 7 C 0.11 3.35 3.08 30.63 0.09 3.44 16 8 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 9 C 0.07 2.72 5.22 86.30 0.45 3.17 16 10 N -0.68 -30.96 6.23 -495.43 -3.09 -34.04 16 11 C 0.21 11.31 2.57 44.17 0.11 11.42 16 12 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 13 C -0.15 -7.79 8.94 71.98 0.64 -7.15 16 14 C -0.51 -29.62 8.84 25.60 0.23 -29.39 16 15 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 16 C 0.01 0.45 5.30 84.65 0.45 0.90 16 17 N -0.92 -54.28 11.32 21.45 0.24 -54.04 16 18 Si 0.96 44.92 29.54 68.60 2.03 46.94 16 19 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 20 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 21 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 22 C 0.03 0.77 4.42 86.31 0.38 1.15 16 23 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.05 0.87 6.42 -2.38 -0.02 0.85 16 25 H 0.05 0.86 6.61 -2.38 -0.02 0.84 16 26 H 0.09 1.18 8.11 -2.39 -0.02 1.16 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 0.83 6.59 -2.39 -0.02 0.81 16 29 H 0.11 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.08 2.83 8.06 -2.39 -0.02 2.81 16 33 H 0.02 0.72 7.44 -2.38 -0.02 0.70 16 34 H 0.33 15.03 7.87 -89.69 -0.71 14.33 16 35 H 0.06 3.55 6.07 -2.39 -0.01 3.54 16 36 H 0.02 0.99 7.45 -2.39 -0.02 0.97 16 37 H 0.03 1.44 8.13 -2.38 -0.02 1.42 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.09 6.40 -2.39 -0.02 1.08 16 Total: -1.00 -63.08 309.19 -1.89 -64.96 By element: Atomic # 1 Polarization: 20.88 SS G_CDS: 0.30 Total: 21.18 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.51 Total: -14.77 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -7.26 Total: -104.14 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: -1.46 Total: -14.17 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -63.08 -1.89 -64.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000252947050.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.583 kcal (2) G-P(sol) polarization free energy of solvation -63.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds