Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99676 * 2 1 4 4 C 1.53003 * 109.46919 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47163 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.47178 * 180.02562 * 5 4 3 7 7 C 1.48530 * 111.00117 * 287.40471 * 6 5 4 8 8 C 1.54944 * 103.22511 * 200.27930 * 7 6 5 9 9 C 1.54593 * 102.92182 * 37.40739 * 8 7 6 10 10 H 1.09008 * 110.38870 * 97.00529 * 9 8 7 11 11 N 1.46499 * 110.30899 * 219.12834 * 9 8 7 12 12 C 1.46498 * 120.00108 * 55.99751 * 11 9 8 13 13 C 1.36940 * 119.99677 * 235.71739 * 11 9 8 14 14 H 1.07994 * 120.00382 * 340.38286 * 13 11 9 15 15 C 1.38812 * 119.99869 * 160.38000 * 13 11 9 16 16 N 1.31621 * 119.99772 * 343.23517 * 15 13 11 17 17 Si 1.86798 * 119.99977 * 163.22738 * 15 13 11 18 18 H 1.48498 * 109.46847 * 85.00068 * 17 15 13 19 19 H 1.48509 * 109.47093 * 204.99460 * 17 15 13 20 20 H 1.48498 * 109.47603 * 324.99751 * 17 15 13 21 21 C 1.47896 * 111.00253 * 170.00115 * 6 5 4 22 22 H 1.08999 * 109.47274 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.47646 * 299.99889 * 1 2 3 24 24 H 1.09007 * 109.47318 * 60.00073 * 1 2 3 25 25 H 1.08999 * 109.47297 * 60.00421 * 3 2 1 26 26 H 1.09000 * 109.47632 * 299.99577 * 3 2 1 27 27 H 1.09008 * 109.46533 * 60.00384 * 4 3 2 28 28 H 1.08997 * 109.47765 * 300.00418 * 4 3 2 29 29 H 1.08997 * 109.46418 * 60.00876 * 5 4 3 30 30 H 1.08998 * 109.47267 * 300.00444 * 5 4 3 31 31 H 1.08998 * 110.66625 * 318.70783 * 7 6 5 32 32 H 1.08998 * 110.67260 * 81.84527 * 7 6 5 33 33 H 1.09003 * 110.72006 * 279.05409 * 8 7 6 34 34 H 1.09001 * 110.72660 * 155.77235 * 8 7 6 35 35 H 1.08997 * 109.46649 * 265.21584 * 12 11 9 36 36 H 1.08996 * 109.47082 * 25.21381 * 12 11 9 37 37 H 1.08994 * 109.47033 * 145.21646 * 12 11 9 38 38 H 0.96997 * 119.99781 * 179.97438 * 16 15 13 39 39 H 1.09004 * 109.91381 * 26.49390 * 21 6 5 40 40 H 1.08998 * 109.91844 * 265.20262 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5824 0.0000 6 7 5.6221 2.4665 0.0000 7 6 6.1201 2.0116 1.3233 8 6 7.6070 2.4471 1.3114 9 6 7.5632 3.8063 0.5761 10 1 7.5439 4.6261 1.2943 11 7 8.7180 3.9395 -0.3155 12 6 8.9723 2.9250 -1.3414 13 6 9.5565 5.0152 -0.1936 14 1 9.2205 5.9070 0.3144 15 6 10.8385 4.9594 -0.7231 16 7 11.3689 3.7977 -1.0418 17 14 11.8108 6.5330 -0.9835 18 1 12.5015 6.9026 0.2781 19 1 12.8170 6.3216 -2.0551 20 1 10.8870 7.6258 -1.3806 21 6 6.2578 3.7800 -0.2403 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 1.6885 1.8464 0.8900 26 1 1.6886 1.8464 -0.8900 27 1 3.8573 0.6436 -0.8892 28 1 3.8568 0.6439 0.8908 29 1 3.8358 3.1237 0.8896 30 1 3.8363 3.1228 -0.8904 31 1 5.5801 2.5087 2.1292 32 1 6.0372 0.9286 1.4141 33 1 8.2146 1.7296 0.7599 34 1 7.9811 2.5702 2.3278 35 1 9.6784 2.1889 -0.9572 36 1 8.0370 2.4298 -1.6022 37 1 9.3906 3.4017 -2.2278 38 1 12.2645 3.7588 -1.4121 39 1 5.5957 4.5794 0.0923 40 1 6.4808 3.8962 -1.3009 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259216015.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = -18.005353 kcal Electronic energy + Delta-G solvation = -17854.214723 eV Core-core repulsion = 15090.901216 eV Total energy + Delta-G solvation = -2763.313507 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.83690 -37.98675 -35.26108 -33.13198 -30.95184 -29.41254 -27.67466 -26.73151 -25.85288 -24.42742 -22.36949 -21.78140 -20.32442 -18.95861 -16.84267 -16.58986 -16.33888 -15.67363 -15.24492 -14.82561 -14.52226 -14.22356 -13.57984 -13.16887 -12.92834 -12.55739 -12.17505 -12.10519 -11.86168 -11.49234 -11.35313 -11.06741 -10.92216 -10.80867 -10.65937 -10.58694 -10.44887 -10.35589 -10.04921 -9.86111 -9.76309 -9.71777 -8.46746 -8.04178 -6.70843 -5.67056 -3.08971 3.41148 3.47717 3.49719 3.50515 4.40358 4.54673 4.85910 4.95731 5.08404 5.16555 5.18399 5.26881 5.34227 5.37820 5.41700 5.47837 5.60728 5.65761 5.71083 5.79787 5.92100 6.11270 6.18123 6.23259 6.27753 6.49480 6.53840 6.89653 6.90946 6.96218 7.04198 7.36843 7.43592 7.50699 7.81519 7.88759 8.44531 9.29720 9.94728 10.43887 11.38018 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.063595 B = 0.003953 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.177094 B = 7081.309988 C = 7134.361117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.063 3.937 4 C -0.112 4.112 5 C 0.051 3.949 6 N -0.514 5.514 7 C 0.036 3.964 8 C -0.139 4.139 9 C 0.171 3.829 10 H 0.065 0.935 11 N -0.590 5.590 12 C 0.163 3.837 13 C -0.257 4.257 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.904 5.904 17 Si 0.902 3.098 18 H -0.288 1.288 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.021 3.979 22 H 0.084 0.916 23 H 0.039 0.961 24 H 0.040 0.960 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.032 0.968 30 H 0.071 0.929 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.011 0.989 37 H 0.038 0.962 38 H 0.252 0.748 39 H 0.032 0.968 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 -4.430 2.967 18.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.015 4.015 4 C -0.150 4.150 5 C -0.078 4.078 6 N -0.238 5.238 7 C -0.092 4.092 8 C -0.179 4.179 9 C 0.061 3.939 10 H 0.083 0.917 11 N -0.311 5.311 12 C 0.019 3.981 13 C -0.386 4.386 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.549 5.549 17 Si 0.732 3.268 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.207 1.207 21 C -0.108 4.108 22 H 0.103 0.897 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.089 0.911 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.079 0.921 35 H 0.044 0.956 36 H 0.030 0.970 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -17.607 -4.985 2.446 18.462 hybrid contribution 0.095 1.636 0.502 1.714 sum -17.512 -3.349 2.948 18.072 Atomic orbital electron populations 1.22724 0.81280 1.02623 0.99859 1.87886 1.19491 1.28318 1.95400 1.22532 0.94588 0.84379 0.99954 1.21441 0.91670 0.97865 1.04046 1.22114 0.89394 0.95718 1.00525 1.64674 1.04243 1.25988 1.28911 1.23220 0.96456 0.99994 0.89549 1.23075 0.94189 1.00108 1.00569 1.21126 0.86991 0.94908 0.90856 0.91674 1.43987 1.26717 1.25843 1.34598 1.20709 0.94858 0.91320 0.91243 1.19212 0.93036 0.91923 1.34475 0.91499 1.24921 0.96213 0.96468 1.02147 1.70116 1.15104 1.22245 1.47451 0.86328 0.79690 0.83251 0.77563 1.21499 1.21626 1.20732 1.23586 0.96542 0.88024 1.02662 0.89731 0.94220 0.94150 0.93581 0.93306 0.90257 0.91206 0.94999 0.91092 0.94606 0.90937 0.90324 0.92089 0.95615 0.97048 0.94308 0.93827 0.94974 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.54 10.70 -35.23 -0.38 -4.92 16 3 C 0.06 0.65 5.94 37.16 0.22 0.87 16 4 C -0.11 -1.34 5.67 -26.73 -0.15 -1.50 16 5 C 0.05 0.67 4.71 -3.82 -0.02 0.65 16 6 N -0.51 -8.30 5.24 -230.46 -1.21 -9.50 16 7 C 0.04 0.56 5.91 -1.90 -0.01 0.55 16 8 C -0.14 -2.61 6.65 -24.87 -0.17 -2.77 16 9 C 0.17 3.56 3.47 -66.58 -0.23 3.33 16 10 H 0.07 1.36 7.90 -51.92 -0.41 0.95 16 11 N -0.59 -14.99 2.83 -171.94 -0.49 -15.48 16 12 C 0.16 4.14 7.44 59.85 0.45 4.58 16 13 C -0.26 -7.14 9.62 -15.06 -0.14 -7.29 16 14 H 0.07 1.81 7.84 -52.49 -0.41 1.40 16 15 C 0.00 0.02 5.02 -17.43 -0.09 -0.07 16 16 N -0.90 -26.79 10.75 55.49 0.60 -26.19 16 17 Si 0.90 22.06 29.59 -169.99 -5.03 17.03 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C 0.02 0.39 5.79 -2.76 -0.02 0.37 16 22 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.04 0.28 8.14 -51.92 -0.42 -0.15 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 1.04 8.14 -51.92 -0.42 0.62 16 28 H 0.07 0.87 7.37 -51.93 -0.38 0.48 16 29 H 0.03 0.39 7.83 -51.93 -0.41 -0.02 16 30 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 31 H 0.04 0.51 7.81 -51.93 -0.41 0.11 16 32 H 0.07 1.06 7.80 -51.93 -0.41 0.65 16 33 H 0.08 1.65 6.97 -51.93 -0.36 1.29 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.03 0.70 7.35 -51.93 -0.38 0.32 16 36 H 0.01 0.26 7.03 -51.93 -0.37 -0.11 16 37 H 0.04 1.05 7.19 -51.93 -0.37 0.68 16 38 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 39 H 0.03 0.53 7.77 -51.93 -0.40 0.13 16 40 H 0.08 1.68 7.16 -51.93 -0.37 1.30 16 LS Contribution 315.08 15.07 4.75 4.75 Total: -1.00 -30.24 315.08 -8.00 -38.24 By element: Atomic # 1 Polarization: 3.17 SS G_CDS: -7.19 Total: -4.02 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 0.95 Total: 0.09 kcal Atomic # 7 Polarization: -50.07 SS G_CDS: -1.10 Total: -51.17 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.38 Total: -4.92 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.24 -8.00 -38.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259216015.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.233 kcal (2) G-P(sol) polarization free energy of solvation -30.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds