Wall clock time and date at job start Mon Mar 30 2020 04:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00031 * 2 1 4 4 C 1.52997 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47095 * 61.62911 * 4 3 2 6 6 C 1.46850 * 111.00411 * 51.03469 * 5 4 3 7 7 C 1.53172 * 109.55675 * 185.83769 * 6 5 4 8 8 C 1.53113 * 109.20863 * 300.85806 * 7 6 5 9 9 C 1.53123 * 109.21150 * 57.62873 * 8 7 6 10 10 H 1.08998 * 109.50352 * 62.25031 * 9 8 7 11 11 N 1.46504 * 109.50331 * 182.37156 * 9 8 7 12 12 C 1.46498 * 119.99962 * 59.99525 * 11 9 8 13 13 C 1.36935 * 119.99873 * 240.00342 * 11 9 8 14 14 H 1.07995 * 120.00038 * 16.23790 * 13 11 9 15 15 C 1.38816 * 119.99721 * 196.24558 * 13 11 9 16 16 N 1.31622 * 120.00292 * 18.10378 * 15 13 11 17 17 Si 1.86797 * 119.99754 * 198.10337 * 15 13 11 18 18 H 1.48500 * 109.47153 * 94.98371 * 17 15 13 19 19 H 1.48504 * 109.47104 * 214.97938 * 17 15 13 20 20 H 1.48497 * 109.47469 * 334.98234 * 17 15 13 21 21 C 1.46849 * 111.00061 * 175.24381 * 5 4 3 22 22 H 1.08990 * 109.47282 * 60.00179 * 1 2 3 23 23 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47387 * 299.99651 * 1 2 3 25 25 H 1.08996 * 109.47093 * 59.99604 * 3 2 1 26 26 H 1.09001 * 109.46530 * 300.00527 * 3 2 1 27 27 H 1.09001 * 109.47199 * 301.62357 * 4 3 2 28 28 H 1.09002 * 109.46835 * 181.62683 * 4 3 2 29 29 H 1.08994 * 109.46168 * 305.85696 * 6 5 4 30 30 H 1.09001 * 109.45914 * 65.83199 * 6 5 4 31 31 H 1.09001 * 109.58525 * 180.90844 * 7 6 5 32 32 H 1.09000 * 109.48434 * 60.75066 * 7 6 5 33 33 H 1.08994 * 109.52530 * 297.69069 * 8 7 6 34 34 H 1.09006 * 109.51937 * 177.56034 * 8 7 6 35 35 H 1.08999 * 109.46988 * 92.72080 * 12 11 9 36 36 H 1.09000 * 109.46992 * 212.71784 * 12 11 9 37 37 H 1.09004 * 109.47452 * 332.71998 * 12 11 9 38 38 H 0.96997 * 119.99986 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.45847 * 54.14101 * 21 5 4 40 40 H 1.08999 * 109.46134 * 294.17627 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9711 0.4902 -1.2195 6 6 3.3799 1.1045 -2.4152 7 6 3.7365 0.2707 -3.6496 8 6 5.2598 0.2009 -3.7875 9 6 5.8544 -0.3980 -2.5098 10 1 5.4859 -1.4154 -2.3791 11 7 7.3158 -0.4155 -2.6120 12 6 8.0526 0.8379 -2.7911 13 6 7.9929 -1.6036 -2.5403 14 1 7.4635 -2.5356 -2.6720 15 6 9.3597 -1.6099 -2.2980 16 7 9.9432 -0.5445 -1.7910 17 14 10.3709 -3.1304 -2.6914 18 1 10.9695 -2.9906 -4.0432 19 1 11.4521 -3.2800 -1.6845 20 1 9.4953 -4.3293 -2.6594 21 6 5.4364 0.4550 -1.3100 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 3.8555 0.6187 0.8742 28 1 3.9787 2.1801 0.0285 29 1 2.2963 1.1445 -2.3049 30 1 3.7703 2.1152 -2.5349 31 1 3.3114 0.7351 -4.5394 32 1 3.3346 -0.7362 -3.5367 33 1 5.6582 1.2040 -3.9393 34 1 5.5199 -0.4273 -4.6395 35 1 8.3499 1.2270 -1.8173 36 1 8.9410 0.6540 -3.3954 37 1 7.4154 1.5654 -3.2940 38 1 10.8982 -0.5491 -1.6214 39 1 5.8463 0.0233 -0.3970 40 1 5.8169 1.4688 -1.4349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259263700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:49 Heat of formation + Delta-G solvation = -13.830486 kcal Electronic energy + Delta-G solvation = -18524.790381 eV Core-core repulsion = 15761.657910 eV Total energy + Delta-G solvation = -2763.132472 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.02518 -37.53574 -35.27045 -32.94342 -31.12018 -29.47873 -28.10399 -26.22306 -25.93748 -24.11016 -22.96836 -21.84615 -20.26102 -18.62599 -16.74084 -16.45112 -16.34720 -15.33756 -14.90567 -14.62817 -14.18683 -13.85384 -13.82546 -13.33178 -13.03350 -12.46531 -12.42432 -12.03141 -11.92675 -11.60835 -11.50635 -11.02295 -10.89493 -10.84028 -10.66120 -10.32876 -10.23702 -10.12755 -9.79383 -9.66037 -9.61480 -9.48230 -8.43806 -7.83911 -6.74557 -5.66119 -3.03686 3.44594 3.51199 3.52891 3.79082 4.21978 4.60376 4.98509 5.11537 5.23075 5.26106 5.29162 5.37290 5.43398 5.48575 5.56874 5.63105 5.69643 5.76611 5.84574 5.95119 6.07154 6.16724 6.28047 6.33621 6.43167 6.58980 6.60348 6.83333 7.06924 7.10564 7.17247 7.46602 7.54791 7.58535 7.75489 7.90110 8.45744 9.31473 9.97027 10.43881 11.40326 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.005372 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.582886 B = 5211.094821 C = 5334.178386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.370 6.370 3 C 0.061 3.939 4 C 0.056 3.944 5 N -0.527 5.527 6 C 0.056 3.944 7 C -0.111 4.111 8 C -0.133 4.133 9 C 0.184 3.816 10 H 0.070 0.930 11 N -0.597 5.597 12 C 0.164 3.836 13 C -0.248 4.248 14 H 0.072 0.928 15 C -0.003 4.003 16 N -0.910 5.910 17 Si 0.902 3.098 18 H -0.290 1.290 19 H -0.293 1.293 20 H -0.279 1.279 21 C 0.047 3.953 22 H 0.036 0.964 23 H 0.084 0.916 24 H 0.035 0.965 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.082 0.918 28 H 0.043 0.957 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.050 0.950 37 H -0.004 1.004 38 H 0.251 0.749 39 H 0.072 0.928 40 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.297 5.461 1.021 17.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.288 6.288 3 C -0.016 4.016 4 C -0.072 4.072 5 N -0.252 5.252 6 C -0.072 4.072 7 C -0.150 4.150 8 C -0.173 4.173 9 C 0.075 3.925 10 H 0.088 0.912 11 N -0.318 5.318 12 C 0.019 3.981 13 C -0.377 4.377 14 H 0.090 0.910 15 C -0.200 4.200 16 N -0.556 5.556 17 Si 0.733 3.267 18 H -0.217 1.217 19 H -0.220 1.220 20 H -0.205 1.205 21 C -0.083 4.083 22 H 0.055 0.945 23 H 0.102 0.898 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.101 0.899 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.015 0.985 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -16.137 4.824 1.092 16.878 hybrid contribution 0.753 0.457 -0.094 0.886 sum -15.384 5.281 0.998 16.296 Atomic orbital electron populations 1.22713 0.82113 1.02537 0.99326 1.88075 1.18476 1.27073 1.95152 1.22684 0.94064 0.85252 0.99598 1.22115 0.92625 0.97386 0.95061 1.61959 1.09662 1.52834 1.00779 1.22142 0.98817 0.95371 0.90901 1.21548 0.97083 1.00539 0.95802 1.22113 0.93682 1.01105 1.00374 1.20271 0.84380 0.97507 0.90307 0.91197 1.44048 0.99553 1.04337 1.83890 1.20754 0.93637 0.85367 0.98351 1.19323 0.90859 0.85461 1.42057 0.91037 1.24857 0.97695 0.97323 1.00174 1.70136 1.09973 1.29002 1.46454 0.86255 0.80106 0.82713 0.77670 1.21706 1.21964 1.20465 1.22804 0.84523 0.99189 1.01746 0.94500 0.89793 0.94654 0.93450 0.93210 0.89948 0.93876 0.91341 0.95867 0.92514 0.91355 0.92914 0.92113 0.96171 0.93168 0.98515 0.93928 0.90917 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.37 -5.02 10.60 -35.23 -0.37 -5.39 16 3 C 0.06 0.72 5.51 37.16 0.20 0.93 16 4 C 0.06 0.79 5.55 -3.83 -0.02 0.77 16 5 N -0.53 -8.79 4.67 -234.59 -1.09 -9.89 16 6 C 0.06 0.82 5.02 -3.76 -0.02 0.80 16 7 C -0.11 -1.69 6.11 -26.58 -0.16 -1.85 16 8 C -0.13 -2.45 5.30 -26.61 -0.14 -2.59 16 9 C 0.18 3.96 2.76 -67.85 -0.19 3.78 16 10 H 0.07 1.59 7.83 -51.93 -0.41 1.19 16 11 N -0.60 -15.34 2.82 -173.39 -0.49 -15.83 16 12 C 0.16 4.14 8.01 59.85 0.48 4.62 16 13 C -0.25 -6.97 9.65 -15.06 -0.15 -7.12 16 14 H 0.07 1.98 7.79 -52.49 -0.41 1.57 16 15 C 0.00 -0.09 5.00 -17.43 -0.09 -0.17 16 16 N -0.91 -27.03 10.64 55.49 0.59 -26.44 16 17 Si 0.90 22.35 29.59 -169.99 -5.03 17.32 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 C 0.05 0.92 4.75 -3.83 -0.02 0.90 16 22 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.54 6.09 -51.93 -0.32 0.23 16 27 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 29 H 0.07 0.91 5.80 -51.93 -0.30 0.61 16 30 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.99 6.58 -51.93 -0.34 0.64 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.02 0.55 7.64 -51.93 -0.40 0.15 16 36 H 0.05 1.37 6.84 -51.93 -0.36 1.02 16 37 H 0.00 -0.08 6.39 -51.93 -0.33 -0.41 16 38 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 39 H 0.07 1.57 8.12 -51.93 -0.42 1.15 16 40 H 0.02 0.50 7.64 -51.93 -0.40 0.10 16 LS Contribution 308.73 15.07 4.65 4.65 Total: -1.00 -30.64 308.73 -7.77 -38.41 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: -7.04 Total: -4.30 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 1.02 Total: 1.46 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -0.99 Total: -52.15 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.37 Total: -5.39 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.03 Total: 17.32 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.64 -7.77 -38.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.582 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds