Wall clock time and date at job start Mon Mar 30 2020 04:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00031 * 2 1 4 4 C 1.52997 * 109.47104 * 180.02562 * 3 2 1 5 5 N 1.46894 * 109.47095 * 61.62911 * 4 3 2 6 6 C 1.46850 * 111.00411 * 51.03469 * 5 4 3 7 7 C 1.53172 * 109.55675 * 185.83769 * 6 5 4 8 8 C 1.53113 * 109.20863 * 300.85806 * 7 6 5 9 9 C 1.53123 * 109.21150 * 57.62873 * 8 7 6 10 10 H 1.08998 * 109.50352 * 62.25031 * 9 8 7 11 11 N 1.46504 * 109.50331 * 182.37156 * 9 8 7 12 12 C 1.46498 * 119.99962 * 59.99525 * 11 9 8 13 13 C 1.36935 * 119.99873 * 240.00342 * 11 9 8 14 14 H 1.07995 * 120.00038 * 16.23790 * 13 11 9 15 15 C 1.38816 * 119.99721 * 196.24558 * 13 11 9 16 16 N 1.31622 * 120.00292 * 18.10378 * 15 13 11 17 17 Si 1.86797 * 119.99754 * 198.10337 * 15 13 11 18 18 H 1.48500 * 109.47153 * 94.98371 * 17 15 13 19 19 H 1.48504 * 109.47104 * 214.97938 * 17 15 13 20 20 H 1.48497 * 109.47469 * 334.98234 * 17 15 13 21 21 C 1.46849 * 111.00061 * 175.24381 * 5 4 3 22 22 H 1.08990 * 109.47282 * 60.00179 * 1 2 3 23 23 H 1.09002 * 109.46586 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47387 * 299.99651 * 1 2 3 25 25 H 1.08996 * 109.47093 * 59.99604 * 3 2 1 26 26 H 1.09001 * 109.46530 * 300.00527 * 3 2 1 27 27 H 1.09001 * 109.47199 * 301.62357 * 4 3 2 28 28 H 1.09002 * 109.46835 * 181.62683 * 4 3 2 29 29 H 1.08994 * 109.46168 * 305.85696 * 6 5 4 30 30 H 1.09001 * 109.45914 * 65.83199 * 6 5 4 31 31 H 1.09001 * 109.58525 * 180.90844 * 7 6 5 32 32 H 1.09000 * 109.48434 * 60.75066 * 7 6 5 33 33 H 1.08994 * 109.52530 * 297.69069 * 8 7 6 34 34 H 1.09006 * 109.51937 * 177.56034 * 8 7 6 35 35 H 1.08999 * 109.46988 * 92.72080 * 12 11 9 36 36 H 1.09000 * 109.46992 * 212.71784 * 12 11 9 37 37 H 1.09004 * 109.47452 * 332.71998 * 12 11 9 38 38 H 0.96997 * 119.99986 * 179.97438 * 16 15 13 39 39 H 1.09001 * 109.45847 * 54.14101 * 21 5 4 40 40 H 1.08999 * 109.46134 * 294.17627 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9711 0.4902 -1.2195 6 6 3.3799 1.1045 -2.4152 7 6 3.7365 0.2707 -3.6496 8 6 5.2598 0.2009 -3.7875 9 6 5.8544 -0.3980 -2.5098 10 1 5.4859 -1.4154 -2.3791 11 7 7.3158 -0.4155 -2.6120 12 6 8.0526 0.8379 -2.7911 13 6 7.9929 -1.6036 -2.5403 14 1 7.4635 -2.5356 -2.6720 15 6 9.3597 -1.6099 -2.2980 16 7 9.9432 -0.5445 -1.7910 17 14 10.3709 -3.1304 -2.6914 18 1 10.9695 -2.9906 -4.0432 19 1 11.4521 -3.2800 -1.6845 20 1 9.4953 -4.3293 -2.6594 21 6 5.4364 0.4550 -1.3100 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 1.6886 1.8464 0.8899 26 1 1.6885 1.8464 -0.8900 27 1 3.8555 0.6187 0.8742 28 1 3.9787 2.1801 0.0285 29 1 2.2963 1.1445 -2.3049 30 1 3.7703 2.1152 -2.5349 31 1 3.3114 0.7351 -4.5394 32 1 3.3346 -0.7362 -3.5367 33 1 5.6582 1.2040 -3.9393 34 1 5.5199 -0.4273 -4.6395 35 1 8.3499 1.2270 -1.8173 36 1 8.9410 0.6540 -3.3954 37 1 7.4154 1.5654 -3.2940 38 1 10.8982 -0.5491 -1.6214 39 1 5.8463 0.0233 -0.3970 40 1 5.8169 1.4688 -1.4349 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259263700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:48 Heat of formation + Delta-G solvation = -34.710353 kcal Electronic energy + Delta-G solvation = -18525.695800 eV Core-core repulsion = 15761.657910 eV Total energy + Delta-G solvation = -2764.037891 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.36371 -38.64450 -36.99832 -34.47189 -32.93863 -30.82296 -29.58914 -28.05526 -27.05335 -25.54709 -24.60930 -23.28154 -21.62634 -20.21823 -18.76624 -17.62129 -17.30681 -16.90828 -16.32095 -15.86072 -15.70504 -15.32630 -15.15681 -14.90612 -14.58101 -14.24816 -13.74515 -13.54960 -13.34009 -12.89459 -12.83765 -12.64328 -12.49752 -12.41402 -12.14769 -12.07384 -11.97707 -11.86328 -11.45139 -11.32835 -11.12162 -10.57776 -10.46271 -9.16699 -8.83215 -7.83308 -5.23384 1.46939 1.48044 1.57626 2.50677 2.87148 3.03418 3.30043 3.72780 3.98214 4.03908 4.11847 4.19402 4.26607 4.42563 4.44992 4.54545 4.57306 4.63059 4.65787 4.70541 4.73981 4.85814 4.92767 4.93566 4.98897 5.05986 5.12604 5.19173 5.28821 5.48366 5.58278 5.62555 5.70155 6.12977 6.24272 6.33665 6.43494 7.15627 7.89826 8.31620 9.21645 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.035770 B = 0.005372 C = 0.005248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.582886 B = 5211.094821 C = 5334.178386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.066 3.934 4 C 0.052 3.948 5 N -0.537 5.537 6 C 0.056 3.944 7 C -0.104 4.104 8 C -0.123 4.123 9 C 0.179 3.821 10 H 0.051 0.949 11 N -0.612 5.612 12 C 0.183 3.817 13 C -0.260 4.260 14 H 0.070 0.930 15 C -0.055 4.055 16 N -0.940 5.940 17 Si 0.968 3.032 18 H -0.287 1.287 19 H -0.295 1.295 20 H -0.269 1.269 21 C 0.065 3.935 22 H 0.049 0.951 23 H 0.088 0.912 24 H 0.050 0.950 25 H 0.070 0.930 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.093 0.907 30 H 0.030 0.970 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.052 0.948 35 H -0.006 1.006 36 H 0.023 0.977 37 H 0.027 0.973 38 H 0.247 0.753 39 H 0.042 0.958 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.449 5.888 0.374 19.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.011 4.011 4 C -0.075 4.075 5 N -0.263 5.263 6 C -0.071 4.071 7 C -0.142 4.142 8 C -0.162 4.162 9 C 0.072 3.928 10 H 0.069 0.931 11 N -0.335 5.335 12 C 0.038 3.962 13 C -0.390 4.390 14 H 0.088 0.912 15 C -0.250 4.250 16 N -0.588 5.588 17 Si 0.796 3.204 18 H -0.214 1.214 19 H -0.222 1.222 20 H -0.194 1.194 21 C -0.065 4.065 22 H 0.068 0.932 23 H 0.106 0.894 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.012 0.988 36 H 0.042 0.958 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -18.345 5.254 0.442 19.088 hybrid contribution 1.324 0.324 0.138 1.370 sum -17.021 5.578 0.580 17.921 Atomic orbital electron populations 1.22882 0.80132 1.03377 1.00677 1.88022 1.20741 1.28103 1.95462 1.22671 0.91902 0.85085 1.01399 1.22196 0.94812 0.97278 0.93261 1.61897 1.07212 1.54424 1.02762 1.22230 1.00055 0.95269 0.89566 1.21531 0.94257 1.00905 0.97533 1.21962 0.96111 1.00304 0.97867 1.20433 0.82256 0.97297 0.92830 0.93061 1.44271 1.01308 1.03727 1.84177 1.20444 0.93217 0.85875 0.96667 1.19617 0.91476 0.86409 1.41494 0.91218 1.25620 0.98662 1.00283 1.00412 1.70289 1.09844 1.30947 1.47676 0.85232 0.78350 0.79691 0.77120 1.21361 1.22201 1.19400 1.22378 0.86976 0.97894 0.99266 0.93213 0.89358 0.93154 0.91153 0.91768 0.91356 0.92866 0.88925 0.95190 0.89319 0.91799 0.92982 0.92893 0.98763 0.95848 0.95513 0.94341 0.93946 0.96349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.66 16 2 O -0.40 -10.05 10.60 -148.98 -1.58 -11.63 16 3 C 0.07 1.37 5.51 71.98 0.40 1.77 16 4 C 0.05 1.40 5.55 86.30 0.48 1.88 16 5 N -0.54 -17.29 4.67 -896.11 -4.18 -21.47 16 6 C 0.06 1.49 5.02 86.37 0.43 1.92 16 7 C -0.10 -2.86 6.11 30.69 0.19 -2.68 16 8 C -0.12 -4.37 5.30 30.67 0.16 -4.20 16 9 C 0.18 7.77 2.76 45.04 0.12 7.89 16 10 H 0.05 2.39 7.83 -2.39 -0.02 2.37 16 11 N -0.61 -32.11 2.82 -702.49 -1.98 -34.10 16 12 C 0.18 9.45 8.01 127.77 1.02 10.47 16 13 C -0.26 -14.93 9.65 84.03 0.81 -14.12 16 14 H 0.07 3.93 7.79 -2.91 -0.02 3.91 16 15 C -0.06 -3.20 5.00 84.86 0.42 -2.78 16 16 N -0.94 -57.30 10.64 21.65 0.23 -57.07 16 17 Si 0.97 46.58 29.59 68.60 2.03 48.61 16 18 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 19 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 20 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 21 C 0.06 2.58 4.75 86.32 0.41 2.99 16 22 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 23 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 25 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.06 1.15 6.09 -2.39 -0.01 1.13 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 29 H 0.09 2.07 5.80 -2.39 -0.01 2.05 16 30 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.85 6.58 -2.39 -0.02 1.83 16 34 H 0.05 1.94 8.14 -2.38 -0.02 1.93 16 35 H -0.01 -0.33 7.64 -2.39 -0.02 -0.35 16 36 H 0.02 1.30 6.84 -2.39 -0.02 1.28 16 37 H 0.03 1.19 6.39 -2.39 -0.02 1.17 16 38 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 39 H 0.04 1.91 8.12 -2.39 -0.02 1.89 16 40 H 0.02 0.74 7.64 -2.39 -0.02 0.73 16 Total: -1.00 -66.87 308.73 1.20 -65.67 By element: Atomic # 1 Polarization: 4.20 SS G_CDS: 0.98 Total: 5.18 kcal Atomic # 6 Polarization: -0.90 SS G_CDS: 5.70 Total: 4.80 kcal Atomic # 7 Polarization: -106.70 SS G_CDS: -5.93 Total: -112.64 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: -1.58 Total: -11.63 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -66.87 1.20 -65.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259263700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.961 kcal (2) G-P(sol) polarization free energy of solvation -66.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds