Wall clock time and date at job start Mon Mar 30 2020 04:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48500 * 109.47035 * 239.72489 * 3 2 1 5 5 H 1.48503 * 109.46845 * 359.71985 * 3 2 1 6 6 H 1.48503 * 109.47237 * 119.72245 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.28126 * 7 2 1 9 9 C 1.50696 * 119.99746 * 0.27650 * 7 2 1 10 10 C 1.50702 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.33149 * 125.53074 * 89.99468 * 10 9 7 12 12 C 1.30496 * 109.52109 * 180.36835 * 11 10 9 13 13 N 1.34206 * 109.32890 * 359.01069 * 12 11 10 14 14 N 1.30341 * 125.53136 * 269.69582 * 10 9 7 15 15 C 1.46563 * 117.72634 * 181.50263 * 13 12 11 16 16 C 1.54541 * 111.00367 * 339.58571 * 15 13 12 17 17 S 1.77680 * 142.95602 * 178.92653 * 12 11 10 18 18 O 1.42102 * 105.65161 * 308.62803 * 17 12 11 19 19 O 1.42094 * 105.65159 * 79.25809 * 17 12 11 20 20 H 0.97001 * 120.00651 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47319 * 299.99477 * 9 7 2 22 22 H 1.08999 * 109.47742 * 60.00602 * 9 7 2 23 23 H 1.08996 * 109.18123 * 219.17872 * 15 13 12 24 24 H 1.08997 * 109.10072 * 99.94392 * 15 13 12 25 25 H 1.08996 * 111.33381 * 269.02288 * 16 15 13 26 26 H 1.08998 * 111.37140 * 144.34174 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.1081 1.6933 -1.2091 5 1 1.2844 2.7464 -0.0068 6 1 3.0980 1.6992 1.2159 7 6 2.0045 -1.1941 0.0058 8 1 3.0845 -1.1942 0.0104 9 6 1.2508 -2.4991 0.0058 10 6 2.2300 -3.6447 0.0133 11 7 2.7279 -4.2300 1.1007 12 6 3.5505 -5.1793 0.7471 13 7 3.5946 -5.2528 -0.5923 14 7 2.7227 -4.2270 -1.0436 15 6 4.4428 -6.2874 -1.1908 16 6 5.5122 -6.7757 -0.1877 17 16 4.6450 -6.4209 1.3930 18 8 5.4899 -5.7454 2.3145 19 8 3.8098 -7.5009 1.7869 20 1 -0.4851 -0.8400 -0.0004 21 1 0.6205 -2.5547 0.8933 22 1 0.6280 -2.5591 -0.8867 23 1 4.9380 -5.8790 -2.0717 24 1 3.8199 -7.1307 -1.4891 25 1 6.4312 -6.1962 -0.2746 26 1 5.7070 -7.8419 -0.3025 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723172.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:42 Heat of formation + Delta-G solvation = 42.012428 kcal Electronic energy + Delta-G solvation = -15203.642559 eV Core-core repulsion = 12412.759294 eV Total energy + Delta-G solvation = -2790.883265 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.97109 -37.64018 -36.53368 -36.11682 -33.62675 -31.10778 -30.77132 -27.87101 -25.17256 -23.50013 -22.22742 -20.41408 -19.34258 -17.48961 -17.03250 -16.93860 -16.64993 -15.83931 -15.45849 -14.71685 -14.15297 -13.76494 -13.38053 -12.91367 -12.70802 -12.56773 -12.49299 -12.06937 -11.69698 -11.51183 -11.05842 -10.73232 -10.67227 -10.09343 -9.81518 -9.75596 -9.62767 -8.61674 -8.43763 -6.46565 -4.17455 -0.67977 1.28816 1.85113 2.02935 2.92578 3.16496 3.42852 3.44596 3.46334 3.64573 3.72746 4.36627 4.50941 4.51116 4.69781 4.83394 4.94269 5.10944 5.32916 6.29596 6.48678 6.73919 7.01004 7.07662 7.92253 8.26956 8.32148 8.73505 9.51131 10.94002 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.042175 B = 0.006048 C = 0.005925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.741857 B = 4628.606259 C = 4724.610125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.075 2.925 4 H -0.287 1.287 5 H -0.280 1.280 6 H -0.285 1.285 7 C -0.594 4.594 8 H 0.051 0.949 9 C 0.091 3.909 10 C 0.272 3.728 11 N -0.420 5.420 12 C -0.247 4.247 13 N -0.401 5.401 14 N -0.269 5.269 15 C 0.115 3.885 16 C -0.579 4.579 17 S 2.503 3.497 18 O -0.893 6.893 19 O -0.896 6.896 20 H 0.270 0.730 21 H 0.047 0.953 22 H 0.040 0.960 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.162 0.838 26 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.302 -15.999 -2.262 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.182 4.182 3 Si 0.902 3.098 4 H -0.214 1.214 5 H -0.205 1.205 6 H -0.212 1.212 7 C -0.633 4.633 8 H 0.069 0.931 9 C 0.051 3.949 10 C -0.009 4.009 11 N -0.147 5.147 12 C -0.605 4.605 13 N -0.199 5.199 14 N -0.095 5.095 15 C -0.009 4.009 16 C -0.711 4.711 17 S 2.672 3.328 18 O -0.888 6.888 19 O -0.892 6.892 20 H 0.080 0.920 21 H 0.065 0.935 22 H 0.058 0.942 23 H 0.141 0.859 24 H 0.132 0.868 25 H 0.180 0.820 26 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 11.882 -14.400 -1.894 18.765 hybrid contribution 0.277 -1.490 -0.992 1.812 sum 12.159 -15.890 -2.887 20.216 Atomic orbital electron populations 1.70797 1.06758 1.30675 1.45826 1.25894 0.96420 1.02590 0.93281 0.83458 0.74842 0.74806 0.76687 1.21394 1.20507 1.21169 1.21706 0.94366 0.90286 1.56981 0.93071 1.18052 0.90948 0.87005 0.98890 1.25652 0.96300 0.95715 0.83270 1.69941 1.08038 1.05071 1.31644 1.37881 1.13931 1.14162 0.94481 1.51889 1.35773 1.26674 1.05559 1.78251 1.08121 1.00538 1.22546 1.21747 0.90875 0.90174 0.98070 1.30813 1.09274 1.13025 1.17955 1.06490 0.75614 0.74186 0.76541 1.93678 1.65884 1.72856 1.56418 1.93694 1.65558 1.51176 1.78770 0.91991 0.93511 0.94163 0.85944 0.86838 0.81986 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.42 13.65 55.43 0.76 -26.66 15 2 C 0.02 0.66 5.46 -17.82 -0.10 0.56 15 3 Si 1.07 25.57 29.90 -169.99 -5.08 20.49 15 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 15 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 15 6 H -0.29 -6.55 7.11 56.52 0.40 -6.15 15 7 C -0.59 -17.43 9.09 -34.44 -0.31 -17.74 15 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 15 9 C 0.09 2.45 4.91 -29.04 -0.14 2.31 15 10 C 0.27 6.77 7.31 -157.24 -1.15 5.62 15 11 N -0.42 -9.90 11.19 -10.99 -0.12 -10.03 15 12 C -0.25 -4.51 8.77 -91.14 -0.80 -5.31 15 13 N -0.40 -6.71 4.60 -60.56 -0.28 -6.99 15 14 N -0.27 -6.01 12.80 32.35 0.41 -5.60 15 15 C 0.11 0.98 7.38 -3.20 -0.02 0.96 15 16 C -0.58 -2.78 7.77 37.97 0.30 -2.49 15 17 S 2.50 28.52 6.21 -107.50 -0.67 27.85 15 18 O -0.89 -12.88 18.02 -57.36 -1.03 -13.91 15 19 O -0.90 -12.00 18.02 -57.36 -1.03 -13.03 15 20 H 0.27 8.06 7.22 -40.82 -0.29 7.76 15 21 H 0.05 1.29 8.00 -51.93 -0.42 0.87 15 22 H 0.04 1.09 8.01 -51.93 -0.42 0.67 15 23 H 0.12 0.83 8.14 -51.93 -0.42 0.41 15 24 H 0.11 0.69 8.14 -51.93 -0.42 0.26 15 25 H 0.16 0.46 8.14 -51.93 -0.42 0.03 15 26 H 0.17 0.05 8.14 -51.93 -0.42 -0.37 15 LS Contribution 249.96 15.07 3.77 3.77 Total: -1.00 -40.35 249.96 -7.53 -47.88 By element: Atomic # 1 Polarization: -5.66 SS G_CDS: -2.02 Total: -7.68 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.23 Total: -16.09 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.77 Total: -49.28 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -2.07 Total: -26.94 kcal Atomic # 14 Polarization: 25.57 SS G_CDS: -5.08 Total: 20.49 kcal Atomic # 16 Polarization: 28.52 SS G_CDS: -0.67 Total: 27.85 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -40.35 -7.53 -47.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723172.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.897 kcal (2) G-P(sol) polarization free energy of solvation -40.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds