Wall clock time and date at job start Mon Mar 30 2020 04:39:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31251 * 1 3 3 Si 1.86798 * 120.00334 * 2 1 4 4 H 1.48494 * 109.47210 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47008 * 300.00325 * 3 2 1 6 6 H 1.48502 * 109.47164 * 60.00061 * 3 2 1 7 7 C 1.39011 * 119.99483 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99540 * 180.02562 * 7 2 1 9 9 N 1.37569 * 120.00396 * 359.97438 * 7 2 1 10 10 N 1.40255 * 126.96070 * 0.02695 * 9 7 2 11 11 N 1.28541 * 107.95190 * 180.14145 * 10 9 7 12 12 C 1.34260 * 110.28987 * 0.06699 * 11 10 9 13 13 C 1.34484 * 108.35828 * 359.72284 * 12 11 10 14 14 C 1.50934 * 127.54217 * 180.41758 * 13 12 11 15 15 S 1.81787 * 108.52817 * 341.83194 * 14 13 12 16 16 O 1.42105 * 108.74794 * 159.56421 * 15 14 13 17 17 O 1.42096 * 108.75015 * 291.02903 * 15 14 13 18 18 C 1.81811 * 100.89858 * 45.29836 * 15 14 13 19 19 C 1.50786 * 123.81945 * 179.44397 * 12 11 10 20 20 H 0.97007 * 119.99996 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.62494 * 222.12031 * 14 13 12 22 22 H 1.08996 * 109.78531 * 101.63997 * 14 13 12 23 23 H 1.09003 * 109.56250 * 54.31797 * 18 15 14 24 24 H 1.08997 * 109.56267 * 174.65853 * 18 15 14 25 25 H 1.09006 * 109.19132 * 281.14644 * 19 12 11 26 26 H 1.09000 * 109.18533 * 40.45175 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2466 1.6177 0.0000 4 1 3.7065 1.3463 -0.0006 5 1 1.8878 2.3964 -1.2125 6 1 1.8879 2.3964 1.2125 7 6 2.0075 -1.2039 -0.0005 8 1 3.0876 -1.2039 -0.0001 9 7 1.3196 -2.3953 -0.0005 10 7 -0.0726 -2.5652 -0.0006 11 7 -0.3177 -3.8271 0.0025 12 6 0.8297 -4.5242 0.0060 13 6 1.8544 -3.6534 -0.0010 14 6 3.3302 -3.9697 -0.0091 15 16 3.5549 -5.6915 0.5292 16 8 4.8261 -6.1464 0.0861 17 8 3.2224 -5.7862 1.9075 18 6 2.2644 -6.5264 -0.4419 19 6 0.8964 -6.0305 0.0223 20 1 -0.4850 0.8401 -0.0004 21 1 3.8518 -3.3010 0.6756 22 1 3.7286 -3.8460 -1.0161 23 1 2.3935 -6.2917 -1.4985 24 1 2.3363 -7.6040 -0.2943 25 1 0.7171 -6.3862 1.0370 26 1 0.1273 -6.4303 -0.6385 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772869.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:44 Heat of formation + Delta-G solvation = 18.346288 kcal Electronic energy + Delta-G solvation = -15705.488748 eV Core-core repulsion = 12913.579242 eV Total energy + Delta-G solvation = -2791.909505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.53558 -36.76791 -35.76135 -34.71412 -33.82638 -32.24786 -29.91754 -26.95587 -25.87160 -23.26962 -21.37926 -19.71481 -18.20686 -17.96171 -16.27588 -15.89106 -15.64832 -15.58916 -14.73485 -14.43546 -13.81559 -13.44828 -12.83297 -12.58809 -12.52709 -12.07497 -11.88178 -11.75637 -11.66526 -11.48868 -11.36041 -10.81773 -10.68631 -10.18518 -10.02115 -9.87508 -9.40724 -8.86071 -7.59660 -7.02905 -4.82998 0.30501 2.61466 2.82945 2.88656 2.92984 3.07431 3.53405 3.77591 3.89537 4.16694 4.46368 4.60060 4.89693 4.95271 5.24195 5.38785 5.48445 5.77531 5.80966 6.10391 6.19545 6.54300 6.67432 6.82087 7.45008 7.68998 8.26773 8.84942 9.91966 9.95228 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.034830 B = 0.008436 C = 0.007137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.716202 B = 3318.220053 C = 3922.388017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.749 5.749 2 C 0.045 3.955 3 Si 0.945 3.055 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.304 4.304 8 H 0.125 0.875 9 N -0.132 5.132 10 N -0.085 5.085 11 N -0.314 5.314 12 C -0.083 4.083 13 C -0.087 4.087 14 C -0.499 4.499 15 S 2.426 3.574 16 O -0.953 6.953 17 O -0.933 6.933 18 C -0.591 4.591 19 C -0.005 4.005 20 H 0.286 0.714 21 H 0.134 0.866 22 H 0.131 0.869 23 H 0.132 0.868 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.207 -4.995 -1.867 8.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.176 4.176 3 Si 0.768 3.232 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.442 4.442 8 H 0.142 0.858 9 N 0.097 4.903 10 N -0.061 5.061 11 N -0.173 5.173 12 C -0.231 4.231 13 C -0.222 4.222 14 C -0.630 4.630 15 S 2.608 3.392 16 O -0.950 6.950 17 O -0.930 6.930 18 C -0.722 4.722 19 C -0.045 4.045 20 H 0.097 0.903 21 H 0.152 0.848 22 H 0.149 0.851 23 H 0.150 0.850 24 H 0.151 0.849 25 H 0.101 0.899 26 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.111 -4.536 -1.253 6.948 hybrid contribution 0.917 0.878 -0.675 1.438 sum 6.029 -3.658 -1.928 7.311 Atomic orbital electron populations 1.70137 1.06534 1.29559 1.31270 1.25857 0.95901 1.01059 0.94751 0.85578 0.79738 0.78894 0.79027 1.18172 1.19340 1.19284 1.20327 0.92555 0.80397 1.50903 0.85751 1.46664 1.06767 1.03768 1.33072 1.82513 0.87992 1.06686 1.28878 1.74151 1.24442 1.00753 1.17948 1.20410 0.89519 0.94867 1.18316 1.19293 0.91459 0.87284 1.24129 1.28507 0.98749 1.23657 1.12079 1.07726 0.76123 0.78603 0.76716 1.93563 1.38209 1.79511 1.83699 1.93570 1.84805 1.85268 1.29355 1.29955 1.14440 1.12531 1.15227 1.19091 0.93462 0.89399 1.02549 0.90293 0.84810 0.85113 0.84962 0.84878 0.89854 0.89349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.38 11.89 55.50 0.66 -18.72 15 2 C 0.05 1.08 5.50 -17.51 -0.10 0.98 15 3 Si 0.95 17.24 29.55 -169.99 -5.02 12.22 15 4 H -0.26 -4.46 7.11 56.52 0.40 -4.06 15 5 H -0.27 -4.83 7.11 56.52 0.40 -4.43 15 6 H -0.27 -4.86 7.11 56.52 0.40 -4.46 15 7 C -0.30 -7.47 10.05 -14.69 -0.15 -7.62 15 8 H 0.12 2.67 7.41 -52.48 -0.39 2.28 15 9 N -0.13 -3.45 3.78 -7.79 -0.03 -3.48 15 10 N -0.08 -2.42 11.74 60.35 0.71 -1.71 15 11 N -0.31 -8.28 12.33 33.24 0.41 -7.87 15 12 C -0.08 -1.85 6.80 -82.82 -0.56 -2.41 15 13 C -0.09 -1.95 6.72 -81.63 -0.55 -2.50 15 14 C -0.50 -8.36 6.17 36.12 0.22 -8.14 15 15 S 2.43 36.50 5.35 -107.50 -0.58 35.92 15 16 O -0.95 -15.60 18.11 -57.81 -1.05 -16.65 15 17 O -0.93 -17.35 17.87 -57.81 -1.03 -18.38 15 18 C -0.59 -7.51 6.39 37.02 0.24 -7.27 15 19 C 0.00 -0.08 5.86 -27.97 -0.16 -0.25 15 20 H 0.29 6.62 8.31 -40.82 -0.34 6.29 15 21 H 0.13 2.12 7.93 -51.93 -0.41 1.71 15 22 H 0.13 1.83 8.14 -51.93 -0.42 1.40 15 23 H 0.13 1.44 8.14 -51.93 -0.42 1.01 15 24 H 0.13 1.26 8.14 -51.93 -0.42 0.83 15 25 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.09 1.33 8.14 -51.93 -0.42 0.90 15 LS Contribution 243.79 15.07 3.67 3.67 Total: -1.00 -34.46 243.79 -5.36 -39.82 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -2.05 Total: 2.38 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: -1.06 Total: -27.20 kcal Atomic # 7 Polarization: -33.53 SS G_CDS: 1.75 Total: -31.78 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -2.08 Total: -35.03 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.02 Total: 12.22 kcal Atomic # 16 Polarization: 36.50 SS G_CDS: -0.58 Total: 35.92 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -34.46 -5.36 -39.82 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772869.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.169 kcal (2) G-P(sol) polarization free energy of solvation -34.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds