Wall clock time and date at job start Mon Mar 30 2020 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00314 * 2 1 4 4 H 1.48497 * 109.46911 * 269.99645 * 3 2 1 5 5 H 1.48500 * 109.47203 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.47050 * 149.99545 * 3 2 1 7 7 C 1.37886 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99585 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99839 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46599 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46689 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00092 * 179.97438 * 11 10 9 13 13 O 1.21703 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.46655 * 120.00294 * 180.02562 * 12 11 10 15 15 C 1.36557 * 125.97840 * 180.02562 * 14 12 11 16 16 C 1.40428 * 106.70959 * 179.97438 * 15 14 12 17 17 Cl 1.73599 * 126.44806 * 179.97438 * 16 15 14 18 18 C 1.35206 * 107.09577 * 0.26052 * 16 15 14 19 19 O 1.33988 * 108.75045 * 359.56994 * 18 16 15 20 20 H 0.97000 * 119.99818 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47221 * 59.99811 * 9 7 2 22 22 H 1.09007 * 109.46731 * 299.99951 * 9 7 2 23 23 H 1.09005 * 109.47494 * 60.00156 * 10 9 7 24 24 H 1.08999 * 109.47524 * 299.99634 * 10 9 7 25 25 H 0.96995 * 120.00411 * 0.02562 * 11 10 9 26 26 H 1.07995 * 126.64372 * 359.93674 * 15 14 12 27 27 H 1.07996 * 125.61581 * 179.70463 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0009 12 6 6.1603 -3.8040 0.0014 13 8 5.5517 -4.8579 0.0013 14 6 7.6268 -3.8041 0.0019 15 6 8.4290 -4.9092 0.0018 16 6 9.7546 -4.4459 0.0018 17 17 11.1890 -5.4238 0.0024 18 6 9.7035 -3.0948 0.0078 19 8 8.4193 -2.7124 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 3.6584 -3.1504 -0.8893 24 1 3.6577 -3.1507 0.8907 25 1 5.9715 -1.7968 0.0014 26 1 8.1064 -5.9398 0.0024 27 1 10.5570 -2.4331 0.0139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259819220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:23 Heat of formation + Delta-G solvation = -35.526851 kcal Electronic energy + Delta-G solvation = -14395.706761 eV Core-core repulsion = 11567.124683 eV Total energy + Delta-G solvation = -2828.582078 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.04810 -39.25383 -37.02525 -35.23877 -33.19012 -32.83248 -30.86048 -29.60176 -25.43501 -23.10738 -22.11052 -20.90333 -20.44811 -18.60168 -16.97327 -16.73186 -16.48985 -15.40699 -14.95749 -14.64585 -14.21675 -13.71246 -13.59779 -13.34657 -13.34180 -12.69471 -12.64381 -11.55835 -11.30694 -11.28077 -10.54562 -10.46607 -10.05305 -9.99060 -9.88499 -9.37923 -9.06291 -8.71811 -8.62277 -6.14319 -4.15001 0.78643 1.65714 1.81764 2.45405 3.16828 3.23278 3.31215 3.32078 3.40224 4.34877 4.37327 4.50932 4.99260 5.18463 5.20742 5.43994 5.76571 5.96816 6.10303 6.37819 6.46878 6.51965 7.04488 7.16021 7.60278 7.66219 8.20557 8.40241 8.89474 9.45377 10.98502 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.056592 B = 0.004078 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.650946 B = 6864.360512 C = 7338.563589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.070 3.930 3 Si 0.882 3.118 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.266 1.266 7 C -0.524 4.524 8 H 0.077 0.923 9 C -0.023 4.023 10 C 0.128 3.872 11 N -0.710 5.710 12 C 0.592 3.408 13 O -0.520 6.520 14 C -0.050 4.050 15 C -0.119 4.119 16 C -0.143 4.143 17 Cl -0.030 7.030 18 C 0.009 3.991 19 O -0.149 6.149 20 H 0.265 0.735 21 H 0.024 0.976 22 H 0.019 0.981 23 H 0.068 0.932 24 H 0.069 0.931 25 H 0.402 0.598 26 H 0.170 0.830 27 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.253 -5.154 0.040 22.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.133 4.133 3 Si 0.709 3.291 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.006 3.994 11 N -0.359 5.359 12 C 0.376 3.624 13 O -0.398 6.398 14 C -0.103 4.103 15 C -0.140 4.140 16 C -0.171 4.171 17 Cl -0.001 7.001 18 C -0.062 4.062 19 O -0.043 6.043 20 H 0.075 0.925 21 H 0.042 0.958 22 H 0.037 0.963 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.237 0.763 26 H 0.187 0.813 27 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 21.585 -5.558 0.042 22.289 hybrid contribution 0.948 1.097 -0.020 1.450 sum 22.532 -4.461 0.021 22.970 Atomic orbital electron populations 1.69901 1.06280 1.27108 1.50189 1.25000 0.94780 0.99166 0.94310 0.86754 0.80273 0.83530 0.78542 1.20194 1.21221 1.19062 1.20888 0.88476 0.94967 1.51939 0.90519 1.19813 0.98138 0.91042 0.97061 1.21673 0.74839 1.00702 1.02183 1.46295 1.09746 1.07535 1.72278 1.16525 0.82540 0.85142 0.78150 1.90899 1.66683 1.31148 1.51100 1.22349 0.92224 0.84350 1.11337 1.21745 0.89739 1.00692 1.01822 1.21071 0.89627 0.92166 1.14260 1.98357 1.34757 1.69563 1.97457 1.24194 0.85129 0.94271 1.02635 1.84201 1.15945 1.34115 1.70053 0.92499 0.95825 0.96267 0.91326 0.91300 0.76350 0.81259 0.76523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.96 13.96 55.43 0.77 -26.18 15 2 C 0.07 1.97 5.47 -17.82 -0.10 1.87 15 3 Si 0.88 20.76 27.47 -169.99 -4.67 16.09 15 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 15 6 H -0.27 -5.91 6.54 56.52 0.37 -5.54 15 7 C -0.52 -14.41 9.66 -34.44 -0.33 -14.74 15 8 H 0.08 2.28 7.99 -52.49 -0.42 1.86 15 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 15 10 C 0.13 2.51 5.61 -4.04 -0.02 2.49 15 11 N -0.71 -11.61 5.55 -61.62 -0.34 -11.95 15 12 C 0.59 9.73 7.79 -12.86 -0.10 9.63 15 13 O -0.52 -10.15 16.86 5.19 0.09 -10.06 15 14 C -0.05 -0.67 7.13 -36.79 -0.26 -0.93 15 15 C -0.12 -1.43 10.62 -39.36 -0.42 -1.85 15 16 C -0.14 -1.44 6.71 -39.84 -0.27 -1.71 15 17 Cl -0.03 -0.27 29.32 -51.86 -1.52 -1.79 15 18 C 0.01 0.08 12.06 29.65 0.36 0.44 15 19 O -0.15 -1.67 10.40 4.88 0.05 -1.62 15 20 H 0.27 7.44 8.31 -40.82 -0.34 7.10 15 21 H 0.02 0.52 7.20 -51.93 -0.37 0.14 15 22 H 0.02 0.41 7.57 -51.92 -0.39 0.02 15 23 H 0.07 1.40 8.14 -51.93 -0.42 0.98 15 24 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 25 H 0.40 5.66 8.23 -40.82 -0.34 5.33 15 26 H 0.17 1.94 8.06 -52.49 -0.42 1.52 15 27 H 0.22 0.96 8.06 -52.49 -0.42 0.54 15 LS Contribution 265.21 15.07 4.00 4.00 Total: -1.00 -31.08 265.21 -5.26 -36.34 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -2.38 Total: 0.61 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -1.26 Total: -5.44 kcal Atomic # 7 Polarization: -38.56 SS G_CDS: 0.43 Total: -38.13 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.14 Total: -11.68 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.67 Total: 16.09 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.52 Total: -1.79 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -31.08 -5.26 -36.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.817 kcal (2) G-P(sol) polarization free energy of solvation -31.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds