Wall clock time and date at job start Mon Mar 30 2020 04:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00314 * 2 1 4 4 H 1.48497 * 109.46911 * 269.99645 * 3 2 1 5 5 H 1.48500 * 109.47203 * 29.99764 * 3 2 1 6 6 H 1.48499 * 109.47050 * 149.99545 * 3 2 1 7 7 C 1.37886 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99585 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99839 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46599 * 180.02562 * 9 7 2 11 11 N 1.46503 * 109.46689 * 179.97438 * 10 9 7 12 12 C 1.34778 * 120.00092 * 179.97438 * 11 10 9 13 13 O 1.21703 * 119.99593 * 0.02562 * 12 11 10 14 14 C 1.46655 * 120.00294 * 180.02562 * 12 11 10 15 15 C 1.36557 * 125.97840 * 180.02562 * 14 12 11 16 16 C 1.40428 * 106.70959 * 179.97438 * 15 14 12 17 17 Cl 1.73599 * 126.44806 * 179.97438 * 16 15 14 18 18 C 1.35206 * 107.09577 * 0.26052 * 16 15 14 19 19 O 1.33988 * 108.75045 * 359.56994 * 18 16 15 20 20 H 0.97000 * 119.99818 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.47221 * 59.99811 * 9 7 2 22 22 H 1.09007 * 109.46731 * 299.99951 * 9 7 2 23 23 H 1.09005 * 109.47494 * 60.00156 * 10 9 7 24 24 H 1.08999 * 109.47524 * 299.99634 * 10 9 7 25 25 H 0.96995 * 120.00411 * 0.02562 * 11 10 9 26 26 H 1.07995 * 126.64372 * 359.93674 * 15 14 12 27 27 H 1.07996 * 125.61581 * 179.70463 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1942 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5115 -1.1942 0.0011 10 6 4.0214 -2.6367 0.0010 11 7 5.4864 -2.6368 0.0009 12 6 6.1603 -3.8040 0.0014 13 8 5.5517 -4.8579 0.0013 14 6 7.6268 -3.8041 0.0019 15 6 8.4290 -4.9092 0.0018 16 6 9.7546 -4.4459 0.0018 17 17 11.1890 -5.4238 0.0024 18 6 9.7035 -3.0948 0.0078 19 8 8.4193 -2.7124 0.0018 20 1 -0.4850 0.8401 -0.0004 21 1 3.8745 -0.6801 0.8911 22 1 3.8752 -0.6805 -0.8889 23 1 3.6584 -3.1504 -0.8893 24 1 3.6577 -3.1507 0.8907 25 1 5.9715 -1.7968 0.0014 26 1 8.1064 -5.9398 0.0024 27 1 10.5570 -2.4331 0.0139 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259819220.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:38:23 Heat of formation + Delta-G solvation = -57.715638 kcal Electronic energy + Delta-G solvation = -14396.668939 eV Core-core repulsion = 11567.124683 eV Total energy + Delta-G solvation = -2829.544256 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.91098 -40.59835 -37.74335 -36.80442 -34.87246 -33.98117 -32.42287 -30.81931 -27.12621 -24.38253 -22.98398 -22.60805 -21.57424 -19.73149 -18.98888 -17.65724 -17.45540 -16.83642 -16.37355 -16.23878 -15.59639 -14.93039 -14.91660 -14.56744 -14.42558 -14.29473 -13.42512 -13.37919 -13.07095 -12.29812 -12.19810 -12.03586 -11.76850 -11.58108 -11.38417 -10.86357 -10.78558 -10.28049 -9.75197 -8.29534 -6.36865 -0.16211 0.91645 0.99395 1.40073 1.42377 1.49882 1.53541 1.96442 2.21406 2.37279 3.05528 3.51293 3.71379 4.03309 4.26184 4.31561 4.39966 4.72567 4.73569 4.88712 5.01652 5.31308 5.38423 5.53100 5.61303 6.21119 6.39771 6.70599 6.95494 7.27616 8.86923 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.056592 B = 0.004078 C = 0.003815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 494.650946 B = 6864.360512 C = 7338.563589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.237 1.237 7 C -0.539 4.539 8 H 0.032 0.968 9 C -0.014 4.014 10 C 0.142 3.858 11 N -0.702 5.702 12 C 0.596 3.404 13 O -0.561 6.561 14 C -0.079 4.079 15 C -0.111 4.111 16 C -0.162 4.162 17 Cl -0.019 7.019 18 C 0.045 3.955 19 O -0.149 6.149 20 H 0.268 0.732 21 H 0.038 0.962 22 H 0.036 0.964 23 H 0.054 0.946 24 H 0.054 0.946 25 H 0.416 0.584 26 H 0.167 0.833 27 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.831 -3.471 0.053 26.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.193 4.193 3 Si 0.780 3.220 4 H -0.190 1.190 5 H -0.213 1.213 6 H -0.160 1.160 7 C -0.577 4.577 8 H 0.050 0.950 9 C -0.052 4.052 10 C 0.019 3.981 11 N -0.352 5.352 12 C 0.382 3.618 13 O -0.442 6.442 14 C -0.131 4.131 15 C -0.132 4.132 16 C -0.190 4.190 17 Cl 0.010 6.990 18 C -0.026 4.026 19 O -0.044 6.044 20 H 0.077 0.923 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.253 0.747 26 H 0.185 0.815 27 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 25.201 -3.879 0.055 25.498 hybrid contribution -0.088 0.463 -0.026 0.471 sum 25.113 -3.416 0.029 25.344 Atomic orbital electron populations 1.70072 1.08531 1.28405 1.51888 1.26070 0.95692 1.03830 0.93724 0.85559 0.79683 0.77461 0.79311 1.19033 1.21293 1.15997 1.21230 0.91417 0.93474 1.51582 0.94991 1.19671 0.94570 0.92733 0.98237 1.21206 0.77057 0.98940 1.00894 1.45997 1.08166 1.08512 1.72556 1.16778 0.83919 0.84241 0.76816 1.90871 1.68139 1.32387 1.52853 1.21549 0.90764 0.85466 1.15294 1.21899 0.90837 1.00439 1.00019 1.21124 0.89260 0.93011 1.15620 1.98366 1.33709 1.69454 1.97488 1.25153 0.84921 0.94453 0.98100 1.84196 1.16791 1.33287 1.70122 0.92343 0.94389 0.94536 0.92794 0.92791 0.74685 0.81504 0.71852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.64 13.96 21.45 0.30 -58.34 15 2 C 0.00 0.23 5.47 84.66 0.46 0.70 15 3 Si 0.96 41.81 27.47 68.60 1.88 43.69 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.39 15 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 15 6 H -0.24 -9.18 6.54 99.48 0.65 -8.53 15 7 C -0.54 -30.27 9.66 25.60 0.25 -30.02 15 8 H 0.03 2.01 7.99 -2.91 -0.02 1.99 15 9 C -0.01 -0.63 4.16 29.85 0.12 -0.50 15 10 C 0.14 5.65 5.61 86.38 0.48 6.13 15 11 N -0.70 -22.31 5.55 -467.08 -2.59 -24.90 15 12 C 0.60 19.39 7.79 86.44 0.67 20.06 15 13 O -0.56 -22.44 16.86 -4.36 -0.07 -22.51 15 14 C -0.08 -1.99 7.13 24.08 0.17 -1.82 15 15 C -0.11 -2.50 10.62 22.41 0.24 -2.26 15 16 C -0.16 -2.79 6.71 22.10 0.15 -2.64 15 17 Cl -0.02 -0.28 29.32 -2.72 -0.08 -0.36 15 18 C 0.04 0.58 12.06 67.12 0.81 1.39 15 19 O -0.15 -2.88 10.40 -5.45 -0.06 -2.94 15 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 15 21 H 0.04 1.56 7.20 -2.39 -0.02 1.54 15 22 H 0.04 1.48 7.57 -2.38 -0.02 1.46 15 23 H 0.05 2.28 8.14 -2.38 -0.02 2.26 15 24 H 0.05 2.29 8.14 -2.39 -0.02 2.27 15 25 H 0.42 10.76 8.23 -92.71 -0.76 10.00 15 26 H 0.17 3.75 8.06 -2.91 -0.02 3.73 15 27 H 0.27 0.71 8.06 -2.91 -0.02 0.69 15 Total: -1.00 -69.62 265.21 3.13 -66.49 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: 0.39 Total: 7.83 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: 3.36 Total: -8.96 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -2.29 Total: -83.24 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.13 Total: -25.45 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.69 kcal Atomic # 17 Polarization: -0.28 SS G_CDS: -0.08 Total: -0.36 kcal Total: -69.62 3.13 -66.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259819220.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.773 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds