Wall clock time and date at job start Mon Mar 30 2020 04:03:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46894 * 111.00144 * 2 1 4 4 C 1.46901 * 110.99646 * 123.95566 * 2 1 3 5 5 C 1.52992 * 109.47461 * 66.04434 * 4 2 1 6 6 C 1.53001 * 109.47222 * 180.02562 * 5 4 2 7 7 N 1.46902 * 109.47379 * 180.02562 * 6 5 4 8 8 C 1.47018 * 110.99798 * 46.36093 * 7 6 5 9 9 C 1.53103 * 109.25164 * 182.39491 * 8 7 6 10 10 O 1.43007 * 109.25999 * 303.14900 * 9 8 7 11 11 C 1.43014 * 113.73660 * 58.67652 * 10 9 8 12 12 C 1.47007 * 111.00152 * 169.99636 * 7 6 5 13 13 H 1.08994 * 109.54563 * 297.56289 * 12 7 6 14 14 C 1.50706 * 109.50672 * 57.67409 * 12 7 6 15 15 H 1.07998 * 119.99629 * 359.77909 * 14 12 7 16 16 C 1.37875 * 119.99955 * 179.78480 * 14 12 7 17 17 N 1.31515 * 119.99932 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47295 * 59.99168 * 18 16 14 20 20 H 1.48500 * 109.47035 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46845 * 299.99264 * 18 16 14 22 22 H 1.08999 * 109.47652 * 296.04851 * 1 2 3 23 23 H 1.08999 * 109.46942 * 56.04984 * 1 2 3 24 24 H 1.08998 * 109.47304 * 176.04453 * 1 2 3 25 25 H 1.09005 * 109.47083 * 183.95397 * 3 2 1 26 26 H 1.09003 * 109.47011 * 303.95201 * 3 2 1 27 27 H 1.08999 * 109.47501 * 63.95098 * 3 2 1 28 28 H 1.09001 * 109.46904 * 306.04196 * 4 2 1 29 29 H 1.09002 * 109.46841 * 186.04974 * 4 2 1 30 30 H 1.09001 * 109.47255 * 59.99978 * 5 4 2 31 31 H 1.09002 * 109.47534 * 300.00117 * 5 4 2 32 32 H 1.09001 * 109.47196 * 59.99731 * 6 5 4 33 33 H 1.09008 * 109.47109 * 299.99516 * 6 5 4 34 34 H 1.08996 * 109.50463 * 62.46575 * 8 7 6 35 35 H 1.09002 * 109.54115 * 302.34735 * 8 7 6 36 36 H 1.09002 * 109.50043 * 183.21424 * 9 8 7 37 37 H 1.09002 * 109.50649 * 63.09155 * 9 8 7 38 38 H 1.09005 * 109.50385 * 181.39330 * 11 10 9 39 39 H 1.09002 * 109.50919 * 61.26539 * 11 10 9 40 40 H 0.97003 * 119.99476 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 1.6313 -2.2426 0.9704 6 6 2.1790 -3.0403 2.1556 7 7 1.8301 -4.4582 1.9947 8 6 2.1136 -4.9187 0.6276 9 6 1.6807 -6.3806 0.4875 10 8 2.3524 -7.1681 1.4743 11 6 2.0980 -6.7475 2.8173 12 6 2.5351 -5.2894 2.9812 13 1 3.6105 -5.2117 2.8215 14 6 2.1972 -4.8161 4.3715 15 1 1.5288 -3.9791 4.5094 16 6 2.7415 -5.4515 5.4673 17 7 3.5552 -6.4711 5.2993 18 14 2.3233 -4.8644 7.1906 19 1 0.8578 -4.9680 7.4069 20 1 3.0312 -5.7084 8.1865 21 1 2.7482 -3.4502 7.3484 22 1 -0.3634 0.4513 0.9232 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3634 -1.0252 -0.0709 25 1 3.0828 1.3431 -0.0709 26 1 1.5898 1.9163 -0.8525 27 1 1.7044 1.8724 0.9232 28 1 1.5610 -0.3872 2.0628 29 1 3.0796 -0.6611 1.1757 30 1 2.0657 -2.6214 0.0452 31 1 0.5471 -2.3475 0.9323 32 1 1.7443 -2.6614 3.0805 33 1 3.2634 -2.9355 2.1940 34 1 3.1821 -4.8349 0.4296 35 1 1.5620 -4.3058 -0.0853 36 1 1.9411 -6.7434 -0.5069 37 1 0.6031 -6.4566 0.6326 38 1 2.6603 -7.3759 3.5081 39 1 1.0325 -6.8343 3.0303 40 1 3.9378 -6.9183 6.0704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259930463.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:03:57 Heat of formation + Delta-G solvation = -56.114475 kcal Electronic energy + Delta-G solvation = -18398.267791 eV Core-core repulsion = 15633.301749 eV Total energy + Delta-G solvation = -2764.966043 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44826 -38.66779 -36.82744 -35.18243 -32.64899 -31.65414 -28.64526 -28.43470 -27.22648 -25.80291 -24.11351 -22.90614 -21.58038 -20.88266 -18.65464 -17.39839 -16.92455 -16.69742 -16.45240 -16.08415 -15.81033 -15.69980 -15.43584 -15.11137 -14.61547 -14.42391 -13.97812 -13.26274 -13.22336 -12.95752 -12.85636 -12.69503 -12.58061 -12.56445 -12.48241 -12.12051 -11.99902 -11.97422 -11.61045 -11.23583 -11.01930 -10.69147 -10.25066 -9.32378 -9.04553 -8.19576 -6.31926 1.41447 1.43302 1.51444 2.38166 2.90911 3.05221 3.20165 3.37397 3.99088 4.12294 4.19643 4.22637 4.34829 4.39547 4.49116 4.51784 4.54457 4.61844 4.65786 4.70557 4.78280 4.83956 4.90825 4.93135 4.99439 5.00880 5.05654 5.21644 5.25390 5.38424 5.51918 5.63919 5.97273 6.04806 6.12188 6.25395 6.45740 6.64130 6.82086 7.37763 8.87974 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019776 B = 0.006810 C = 0.005334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.519433 B = 4110.503466 C = 5247.603896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.559 5.559 3 C 0.023 3.977 4 C 0.062 3.938 5 C -0.102 4.102 6 C 0.076 3.924 7 N -0.539 5.539 8 C 0.016 3.984 9 C 0.059 3.941 10 O -0.421 6.421 11 C 0.083 3.917 12 C 0.196 3.804 13 H -0.037 1.037 14 C -0.524 4.524 15 H 0.064 0.936 16 C 0.013 3.987 17 N -0.922 5.922 18 Si 0.966 3.034 19 H -0.269 1.269 20 H -0.282 1.282 21 H -0.271 1.271 22 H 0.024 0.976 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.061 0.939 33 H 0.007 0.993 34 H 0.017 0.983 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 10.967 -9.809 15.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.283 5.283 3 C -0.125 4.125 4 C -0.067 4.067 5 C -0.140 4.140 6 C -0.053 4.053 7 N -0.265 5.265 8 C -0.112 4.112 9 C -0.018 4.018 10 O -0.340 6.340 11 C 0.006 3.994 12 C 0.088 3.912 13 H -0.020 1.020 14 C -0.562 4.562 15 H 0.082 0.918 16 C -0.186 4.186 17 N -0.561 5.561 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.196 1.196 22 H 0.042 0.958 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.088 0.912 26 H 0.100 0.900 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.025 0.975 34 H 0.036 0.964 35 H 0.127 0.873 36 H 0.135 0.865 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.284 10.409 -10.103 15.438 hybrid contribution 0.633 0.669 1.867 2.082 sum -4.651 11.078 -8.236 14.567 Atomic orbital electron populations 1.22478 0.86688 1.02729 1.00856 1.61995 1.08911 1.14590 1.42820 1.22432 1.00989 0.88011 1.01023 1.22000 0.99978 0.93328 0.91393 1.21595 1.01546 0.93494 0.97315 1.21834 0.96582 0.87932 0.98922 1.62323 1.58125 1.03008 1.03011 1.22907 0.98615 0.97687 0.92034 1.22826 0.96637 0.89695 0.92654 1.87857 1.72285 1.56985 1.16906 1.22732 0.98340 0.97290 0.81064 1.19608 0.89676 0.90763 0.91152 1.01979 1.21267 1.28339 1.16206 0.90370 0.91824 1.25804 0.94463 0.94972 1.03371 1.69979 1.31893 1.22373 1.31837 0.85488 0.78593 0.78258 0.78596 1.19370 1.20771 1.19629 0.95766 0.90018 0.91251 0.91236 0.89959 0.95636 0.95072 0.91126 0.90973 0.90994 0.92021 0.97505 0.96449 0.87333 0.86464 0.92643 0.88793 0.95282 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.32 127.69 1.19 1.59 16 2 N -0.56 -12.63 5.02 -948.87 -4.76 -17.39 16 3 C 0.02 0.42 9.57 127.69 1.22 1.64 16 4 C 0.06 1.60 4.96 86.30 0.43 2.03 16 5 C -0.10 -2.98 4.41 30.59 0.13 -2.84 16 6 C 0.08 2.95 4.72 86.30 0.41 3.36 16 7 N -0.54 -23.54 4.68 -874.36 -4.09 -27.63 16 8 C 0.02 0.58 4.94 86.32 0.43 1.00 16 9 C 0.06 2.11 7.01 72.02 0.50 2.62 16 10 O -0.42 -19.69 10.83 -148.98 -1.61 -21.31 16 11 C 0.08 4.29 6.02 72.02 0.43 4.73 16 12 C 0.20 10.35 1.93 44.18 0.09 10.44 16 13 H -0.04 -2.26 8.14 -2.39 -0.02 -2.28 16 14 C -0.52 -28.94 8.03 25.60 0.21 -28.73 16 15 H 0.06 3.46 6.55 -2.91 -0.02 3.44 16 16 C 0.01 0.73 5.30 84.65 0.45 1.17 16 17 N -0.92 -53.34 11.36 21.45 0.24 -53.10 16 18 Si 0.97 43.28 29.54 68.60 2.03 45.30 16 19 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 22 H 0.02 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.08 1.29 8.12 -2.39 -0.02 1.28 16 24 H 0.07 1.41 6.47 -2.39 -0.02 1.40 16 25 H 0.07 1.21 8.12 -2.38 -0.02 1.19 16 26 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 27 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.03 0.83 8.12 -2.39 -0.02 0.81 16 29 H 0.07 1.85 8.06 -2.39 -0.02 1.83 16 30 H 0.07 2.07 6.27 -2.39 -0.01 2.05 16 31 H 0.07 2.06 6.55 -2.39 -0.02 2.04 16 32 H 0.06 2.57 6.72 -2.39 -0.02 2.55 16 33 H 0.01 0.28 8.08 -2.38 -0.02 0.26 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.11 3.22 6.05 -2.39 -0.01 3.21 16 36 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 5.40 6.17 -2.38 -0.01 5.39 16 39 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -62.74 307.67 -1.72 -64.46 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 0.99 Total: 12.65 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 5.49 Total: -2.99 kcal Atomic # 7 Polarization: -89.51 SS G_CDS: -8.61 Total: -98.12 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.61 Total: -21.31 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.30 kcal Total: -62.74 -1.72 -64.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259930463.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.350 kcal (2) G-P(sol) polarization free energy of solvation -62.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds