Wall clock time and date at job start Mon Mar 30 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47783 * 2 1 4 4 C 1.50707 * 109.47252 * 239.99710 * 2 1 3 5 5 H 1.07996 * 120.00090 * 275.01049 * 4 2 1 6 6 C 1.37873 * 119.99488 * 95.00684 * 4 2 1 7 7 N 1.31520 * 119.99720 * 184.92113 * 6 4 2 8 8 Si 1.86804 * 120.00492 * 4.91190 * 6 4 2 9 9 H 1.48509 * 109.46866 * 84.83529 * 8 6 4 10 10 H 1.48498 * 109.47493 * 204.83321 * 8 6 4 11 11 H 1.48501 * 109.47256 * 324.84019 * 8 6 4 12 12 N 1.46506 * 109.47081 * 120.00018 * 2 1 3 13 13 C 1.34768 * 119.99765 * 275.00420 * 12 2 1 14 14 O 1.21693 * 120.00438 * 359.97438 * 13 12 2 15 15 C 1.46656 * 119.99777 * 179.97438 * 13 12 2 16 16 C 1.36563 * 125.98144 * 179.97438 * 15 13 12 17 17 C 1.40422 * 106.71375 * 180.02562 * 16 15 13 18 18 Cl 1.73596 * 126.45047 * 179.97438 * 17 16 15 19 19 C 1.35199 * 107.09706 * 359.97438 * 17 16 15 20 20 O 1.33988 * 108.75381 * 0.02562 * 19 17 16 21 21 H 1.09003 * 109.47055 * 55.03569 * 1 2 3 22 22 H 1.08996 * 109.47379 * 175.03163 * 1 2 3 23 23 H 1.08994 * 109.47079 * 295.03734 * 1 2 3 24 24 H 0.97000 * 119.99983 * 180.02562 * 7 6 4 25 25 H 0.97005 * 119.99672 * 94.99729 * 12 2 1 26 26 H 1.08001 * 126.63396 * 359.73979 * 16 15 13 27 27 H 1.08003 * 125.62500 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5994 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3571 14 8 1.8579 1.1625 2.4117 15 6 2.6352 -0.7098 3.5547 16 6 2.8122 -0.1506 4.7880 17 6 3.2919 -1.1686 5.6279 18 17 3.6906 -1.0151 7.3105 19 6 3.3849 -2.2906 4.8794 20 8 2.9884 -2.0096 3.6307 21 1 -0.3633 0.5889 -0.8422 22 1 -0.3634 -1.0237 -0.0890 23 1 -0.3633 0.4349 0.9311 24 1 2.9372 -0.1049 -4.2553 25 1 2.2490 -1.6319 1.1526 26 1 2.6243 0.8769 5.0627 27 1 3.7238 -3.2544 5.2299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260042971.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:40 Heat of formation + Delta-G solvation = -33.803817 kcal Electronic energy + Delta-G solvation = -14895.229283 eV Core-core repulsion = 12066.721922 eV Total energy + Delta-G solvation = -2828.507361 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.81955 -38.94324 -36.87018 -35.11055 -32.95873 -32.43092 -30.66243 -29.09977 -25.39365 -23.65955 -21.91783 -20.82197 -19.79931 -18.71919 -16.96012 -16.47974 -16.01362 -15.57299 -14.51051 -14.19128 -14.02997 -13.49049 -13.28617 -13.17857 -12.58000 -12.54058 -12.45175 -11.59313 -11.19483 -11.13454 -10.89148 -10.67505 -9.96227 -9.79168 -9.69121 -9.28767 -8.81969 -8.75718 -8.24859 -6.28768 -4.33601 1.03953 1.82379 2.02666 2.70487 3.22806 3.31069 3.37312 3.51860 3.79751 4.27648 4.58834 4.75175 5.08963 5.30418 5.44163 5.68005 5.97572 6.25204 6.43877 6.58817 6.60000 6.82032 7.09878 7.25319 7.40338 8.00218 8.41679 8.63478 8.74293 9.31829 10.82682 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.047760 B = 0.005153 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.125195 B = 5432.650984 C = 5603.367528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.229 3.771 3 H 0.054 0.946 4 C -0.533 4.533 5 H 0.081 0.919 6 C 0.082 3.918 7 N -0.886 5.886 8 Si 0.874 3.126 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.259 1.259 12 N -0.685 5.685 13 C 0.583 3.417 14 O -0.533 6.533 15 C -0.041 4.041 16 C -0.128 4.128 17 C -0.142 4.142 18 Cl -0.034 7.034 19 C 0.003 3.997 20 O -0.146 6.146 21 H 0.055 0.945 22 H 0.049 0.951 23 H 0.030 0.970 24 H 0.269 0.731 25 H 0.400 0.600 26 H 0.168 0.832 27 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 -3.005 16.570 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.127 3.873 3 H 0.071 0.929 4 C -0.571 4.571 5 H 0.099 0.901 6 C -0.123 4.123 7 N -0.522 5.522 8 Si 0.700 3.300 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.184 1.184 12 N -0.332 5.332 13 C 0.367 3.633 14 O -0.413 6.413 15 C -0.094 4.094 16 C -0.149 4.149 17 C -0.170 4.170 18 Cl -0.006 7.006 19 C -0.068 4.068 20 O -0.041 6.041 21 H 0.074 0.926 22 H 0.068 0.932 23 H 0.049 0.951 24 H 0.079 0.921 25 H 0.234 0.766 26 H 0.185 0.815 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.912 -2.329 16.209 16.401 hybrid contribution 0.295 0.499 0.306 0.656 sum 1.208 -1.830 16.515 16.660 Atomic orbital electron populations 1.22228 0.98112 1.00895 0.99516 1.19270 0.91258 0.94412 0.82314 0.92861 1.20978 1.45596 0.95738 0.94769 0.90134 1.24943 0.93464 0.98741 0.95114 1.69878 1.44277 1.36300 1.01701 0.86901 0.79895 0.85671 0.77538 1.19727 1.21040 1.18370 1.46715 1.62951 1.14256 1.09297 1.16694 0.79112 0.86090 0.81410 1.90847 1.52280 1.14266 1.83945 1.22616 1.07554 0.81686 0.97544 1.21706 1.01566 1.00982 0.90664 1.21046 1.11701 0.95833 0.88453 1.98343 1.92711 1.98026 1.11495 1.24144 1.01614 0.99767 0.81271 1.84223 1.63258 1.26915 1.29676 0.92555 0.93174 0.95063 0.92112 0.76603 0.81481 0.76711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 9.47 37.16 0.35 -2.83 15 2 C 0.23 5.37 2.22 -69.08 -0.15 5.21 15 3 H 0.05 1.35 4.73 -51.93 -0.25 1.10 15 4 C -0.53 -14.09 9.05 -34.44 -0.31 -14.41 15 5 H 0.08 2.24 8.06 -52.49 -0.42 1.82 15 6 C 0.08 2.27 5.47 -17.82 -0.10 2.17 15 7 N -0.89 -25.69 13.96 55.43 0.77 -24.92 15 8 Si 0.87 21.12 26.99 -169.99 -4.59 16.54 15 9 H -0.27 -6.59 7.11 56.52 0.40 -6.19 15 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 15 11 H -0.26 -6.14 6.82 56.52 0.39 -5.75 15 12 N -0.69 -13.89 5.06 -56.25 -0.28 -14.17 15 13 C 0.58 11.45 7.75 -12.87 -0.10 11.35 15 14 O -0.53 -11.99 16.53 5.20 0.09 -11.90 15 15 C -0.04 -0.66 7.13 -36.79 -0.26 -0.92 15 16 C -0.13 -1.82 10.62 -39.36 -0.42 -2.24 15 17 C -0.14 -1.70 6.71 -39.84 -0.27 -1.97 15 18 Cl -0.03 -0.35 29.32 -51.86 -1.52 -1.87 15 19 C 0.00 0.04 12.06 29.65 0.36 0.39 15 20 O -0.15 -2.00 10.40 4.86 0.05 -1.95 15 21 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 22 H 0.05 1.01 8.14 -51.93 -0.42 0.59 15 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 24 H 0.27 7.32 8.31 -40.82 -0.34 6.98 15 25 H 0.40 7.31 8.35 -40.82 -0.34 6.97 15 26 H 0.17 2.27 8.06 -52.49 -0.42 1.85 15 27 H 0.22 1.34 8.06 -52.48 -0.42 0.92 15 LS Contribution 263.74 15.07 3.97 3.97 Total: -1.00 -29.94 263.74 -4.68 -34.62 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -2.27 Total: 2.93 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -0.90 Total: -3.24 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.49 Total: -39.09 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.14 Total: -13.86 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.59 Total: 16.54 kcal Atomic # 17 Polarization: -0.35 SS G_CDS: -1.52 Total: -1.87 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -29.94 -4.68 -34.62 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042971.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.816 kcal (2) G-P(sol) polarization free energy of solvation -29.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds