Wall clock time and date at job start Mon Mar 30 2020 04:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47783 * 2 1 4 4 C 1.50707 * 109.47252 * 239.99710 * 2 1 3 5 5 H 1.07996 * 120.00090 * 275.01049 * 4 2 1 6 6 C 1.37873 * 119.99488 * 95.00684 * 4 2 1 7 7 N 1.31520 * 119.99720 * 184.92113 * 6 4 2 8 8 Si 1.86804 * 120.00492 * 4.91190 * 6 4 2 9 9 H 1.48509 * 109.46866 * 84.83529 * 8 6 4 10 10 H 1.48498 * 109.47493 * 204.83321 * 8 6 4 11 11 H 1.48501 * 109.47256 * 324.84019 * 8 6 4 12 12 N 1.46506 * 109.47081 * 120.00018 * 2 1 3 13 13 C 1.34768 * 119.99765 * 275.00420 * 12 2 1 14 14 O 1.21693 * 120.00438 * 359.97438 * 13 12 2 15 15 C 1.46656 * 119.99777 * 179.97438 * 13 12 2 16 16 C 1.36563 * 125.98144 * 179.97438 * 15 13 12 17 17 C 1.40422 * 106.71375 * 180.02562 * 16 15 13 18 18 Cl 1.73596 * 126.45047 * 179.97438 * 17 16 15 19 19 C 1.35199 * 107.09706 * 359.97438 * 17 16 15 20 20 O 1.33988 * 108.75381 * 0.02562 * 19 17 16 21 21 H 1.09003 * 109.47055 * 55.03569 * 1 2 3 22 22 H 1.08996 * 109.47379 * 175.03163 * 1 2 3 23 23 H 1.08994 * 109.47079 * 295.03734 * 1 2 3 24 24 H 0.97000 * 119.99983 * 180.02562 * 7 6 4 25 25 H 0.97005 * 119.99672 * 94.99729 * 12 2 1 26 26 H 1.08001 * 126.63396 * 359.73979 * 16 15 13 27 27 H 1.08003 * 125.62500 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.1354 -1.7855 -1.2291 6 6 2.3604 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5994 2.3948 -1.7820 10 1 2.1061 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0183 -0.6906 1.1962 13 6 2.1469 -0.0183 2.3571 14 8 1.8579 1.1625 2.4117 15 6 2.6352 -0.7098 3.5547 16 6 2.8122 -0.1506 4.7880 17 6 3.2919 -1.1686 5.6279 18 17 3.6906 -1.0151 7.3105 19 6 3.3849 -2.2906 4.8794 20 8 2.9884 -2.0096 3.6307 21 1 -0.3633 0.5889 -0.8422 22 1 -0.3634 -1.0237 -0.0890 23 1 -0.3633 0.4349 0.9311 24 1 2.9372 -0.1049 -4.2553 25 1 2.2490 -1.6319 1.1526 26 1 2.6243 0.8769 5.0627 27 1 3.7238 -3.2544 5.2299 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260042971.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:40 Heat of formation + Delta-G solvation = -54.612847 kcal Electronic energy + Delta-G solvation = -14896.131630 eV Core-core repulsion = 12066.721922 eV Total energy + Delta-G solvation = -2829.409708 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.87443 -40.53513 -37.73358 -36.87920 -34.49698 -33.92965 -32.23222 -30.42734 -27.36220 -25.02891 -22.94890 -22.34755 -21.38301 -20.15243 -18.67668 -17.60261 -17.34202 -17.29796 -16.10849 -15.69672 -15.40488 -14.92807 -14.55182 -14.46695 -14.32099 -14.18243 -13.42028 -13.34179 -13.05704 -12.82147 -12.49604 -12.01785 -11.88407 -11.33406 -11.27563 -10.85524 -10.82894 -10.08985 -9.68858 -8.40344 -6.47941 -0.09998 0.92493 1.02547 1.30423 1.35207 1.45122 1.59109 2.07032 2.26481 2.37485 3.01394 3.59999 3.73703 4.09739 4.30033 4.42553 4.70024 4.75209 4.78552 4.92079 5.04166 5.28508 5.42041 5.54578 5.62583 6.08146 6.55806 6.70299 7.08597 7.23151 8.74430 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.047760 B = 0.005153 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.125195 B = 5432.650984 C = 5603.367528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.233 3.767 3 H 0.037 0.963 4 C -0.530 4.530 5 H 0.057 0.943 6 C 0.034 3.966 7 N -0.928 5.928 8 Si 0.926 3.074 9 H -0.273 1.273 10 H -0.276 1.276 11 H -0.252 1.252 12 N -0.688 5.688 13 C 0.587 3.413 14 O -0.569 6.569 15 C -0.077 4.077 16 C -0.114 4.114 17 C -0.159 4.159 18 Cl -0.017 7.017 19 C 0.039 3.961 20 O -0.152 6.152 21 H 0.053 0.947 22 H 0.058 0.942 23 H 0.040 0.960 24 H 0.272 0.728 25 H 0.408 0.592 26 H 0.168 0.832 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.255 -3.400 18.629 18.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.129 3.871 3 H 0.055 0.945 4 C -0.568 4.568 5 H 0.075 0.925 6 C -0.167 4.167 7 N -0.566 5.566 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.201 1.201 11 H -0.176 1.176 12 N -0.336 5.336 13 C 0.373 3.627 14 O -0.451 6.451 15 C -0.129 4.129 16 C -0.135 4.135 17 C -0.187 4.187 18 Cl 0.011 6.989 19 C -0.032 4.032 20 O -0.047 6.047 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.059 0.941 24 H 0.081 0.919 25 H 0.244 0.756 26 H 0.186 0.814 27 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 1.103 -2.739 18.288 18.525 hybrid contribution 0.290 0.489 -0.145 0.587 sum 1.394 -2.250 18.143 18.335 Atomic orbital electron populations 1.22128 0.96505 1.01591 0.99932 1.19041 0.92422 0.93269 0.82322 0.94523 1.21148 1.44805 0.94864 0.95996 0.92463 1.25623 0.93532 1.02631 0.94888 1.69976 1.46206 1.37897 1.02484 0.86061 0.79904 0.81074 0.77925 1.19897 1.20131 1.17574 1.46413 1.63583 1.14609 1.08973 1.16925 0.78078 0.85737 0.81920 1.90811 1.53760 1.15780 1.84789 1.21749 1.11498 0.83055 0.96564 1.21870 0.99696 1.01510 0.90426 1.21085 1.12615 0.95593 0.89445 1.98355 1.92586 1.98005 1.09939 1.25142 0.97582 1.00951 0.79504 1.84215 1.63480 1.25686 1.31285 0.92770 0.92244 0.94076 0.91893 0.75598 0.81449 0.71945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.01 9.47 71.98 0.68 -5.33 15 2 C 0.23 10.87 2.22 44.25 0.10 10.97 15 3 H 0.04 1.85 4.73 -2.39 -0.01 1.84 15 4 C -0.53 -28.37 9.05 25.60 0.23 -28.13 15 5 H 0.06 3.27 8.06 -2.91 -0.02 3.24 15 6 C 0.03 1.90 5.47 84.65 0.46 2.36 15 7 N -0.93 -54.65 13.96 21.45 0.30 -54.35 15 8 Si 0.93 43.68 26.99 68.60 1.85 45.53 15 9 H -0.27 -12.87 7.11 99.48 0.71 -12.17 15 10 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 11 H -0.25 -11.47 6.82 99.48 0.68 -10.80 15 12 N -0.69 -27.81 5.06 -450.09 -2.28 -30.09 15 13 C 0.59 22.88 7.75 86.44 0.67 23.55 15 14 O -0.57 -25.60 16.53 -4.33 -0.07 -25.67 15 15 C -0.08 -2.35 7.13 24.08 0.17 -2.18 15 16 C -0.11 -3.04 10.62 22.41 0.24 -2.80 15 17 C -0.16 -3.32 6.71 22.10 0.15 -3.17 15 18 Cl -0.02 -0.31 29.32 -2.72 -0.08 -0.39 15 19 C 0.04 0.68 12.06 67.12 0.81 1.49 15 20 O -0.15 -3.80 10.40 -5.51 -0.06 -3.86 15 21 H 0.05 2.27 8.14 -2.39 -0.02 2.25 15 22 H 0.06 2.34 8.14 -2.39 -0.02 2.33 15 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 15 24 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 25 H 0.41 14.89 8.35 -92.70 -0.77 14.12 15 26 H 0.17 4.37 8.06 -2.91 -0.02 4.35 15 27 H 0.26 1.78 8.06 -2.91 -0.02 1.76 15 Total: -1.00 -64.72 263.74 3.58 -61.14 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.41 Total: 10.94 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: 3.51 Total: -3.25 kcal Atomic # 7 Polarization: -82.45 SS G_CDS: -1.98 Total: -84.43 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -0.13 Total: -29.53 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.85 Total: 45.53 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -0.08 Total: -0.39 kcal Total: -64.72 3.58 -61.14 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260042971.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.525 kcal (2) G-P(sol) polarization free energy of solvation -64.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds