Wall clock time and date at job start Mon Mar 30 2020 04:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99604 * 2 1 4 4 H 1.48500 * 109.47331 * 240.00391 * 3 2 1 5 5 H 1.48500 * 109.46695 * 120.00846 * 3 2 1 6 6 H 1.48493 * 109.47556 * 0.02562 * 3 2 1 7 7 C 1.37872 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99897 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47493 * 59.99823 * 9 7 2 11 11 N 1.46906 * 109.47073 * 299.99597 * 9 7 2 12 12 C 1.50701 * 109.47135 * 179.97438 * 9 7 2 13 13 C 1.38572 * 120.00545 * 73.30305 * 12 9 7 14 14 O 1.35988 * 120.06228 * 359.95212 * 13 12 9 15 15 C 1.39146 * 119.86417 * 179.97438 * 13 12 9 16 16 O 1.36016 * 120.05701 * 179.97438 * 15 13 12 17 17 C 1.38553 * 119.88232 * 359.97438 * 15 13 12 18 18 C 1.38238 * 120.01225 * 0.02562 * 17 15 13 19 19 C 1.38335 * 120.00808 * 253.02266 * 12 9 7 20 20 Cl 1.73604 * 119.93821 * 0.02562 * 19 12 9 21 21 H 0.96999 * 119.99935 * 180.02562 * 1 2 3 22 22 H 1.00902 * 110.99977 * 187.79286 * 11 9 7 23 23 H 1.00891 * 111.00281 * 311.75337 * 11 9 7 24 24 H 0.96700 * 114.00259 * 90.00854 * 14 13 12 25 25 H 0.96698 * 113.99551 * 90.00197 * 16 15 13 26 26 H 1.08005 * 119.99122 * 180.02562 * 17 15 13 27 27 H 1.08001 * 119.93601 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 3.1029 1.6964 1.2124 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8902 11 7 0.4071 -2.5772 1.1993 12 6 2.2305 -3.6445 -0.0018 13 6 2.9437 -3.9476 1.1469 14 8 2.7617 -3.2118 2.2759 15 6 3.8468 -5.0062 1.1426 16 8 4.5494 -5.3069 2.2678 17 6 4.0291 -5.7534 -0.0099 18 6 3.3150 -5.4466 -1.1530 19 6 2.4133 -4.3971 -1.1480 20 17 1.5142 -4.0204 -2.5845 21 1 -0.4850 -0.8400 0.0004 22 1 -0.0102 -3.4915 1.2890 23 1 0.9317 -2.3364 2.0268 24 1 2.0659 -3.5484 2.8570 25 1 4.1095 -5.9435 2.8477 26 1 4.7293 -6.5757 -0.0150 27 1 3.4577 -6.0301 -2.0505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260148136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:53 Heat of formation + Delta-G solvation = -64.182782 kcal Electronic energy + Delta-G solvation = -15671.194857 eV Core-core repulsion = 12841.370165 eV Total energy + Delta-G solvation = -2829.824692 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.09879 -37.19085 -36.72118 -35.46460 -34.50574 -31.35079 -29.45962 -28.78641 -25.55521 -23.03291 -22.24980 -20.81016 -18.29974 -17.70495 -17.01250 -16.14258 -15.82751 -14.73193 -14.44958 -14.28866 -13.71111 -13.52148 -12.89310 -12.70575 -12.43933 -12.13490 -11.53696 -11.03297 -10.87294 -10.77281 -10.66629 -10.24358 -10.02151 -9.85169 -8.86762 -8.29640 -8.23798 -8.07783 -7.53440 -6.15217 -3.95821 1.23614 1.46070 2.55388 3.52347 3.54204 3.65381 3.72754 4.21797 4.40854 4.64893 5.05484 5.25015 5.49157 5.59314 5.78462 6.05345 6.10318 6.16862 6.44686 6.47622 6.79126 7.25959 7.55264 7.91237 8.04901 8.26133 8.65583 8.75704 9.08751 9.83713 11.25533 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.010162 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.583850 B = 2754.651280 C = 3413.464443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.038 3.962 3 Si 1.063 2.937 4 H -0.290 1.290 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.595 4.595 8 H 0.045 0.955 9 C 0.239 3.761 10 H 0.057 0.943 11 N -0.832 5.832 12 C -0.074 4.074 13 C 0.094 3.906 14 O -0.463 6.463 15 C 0.076 3.924 16 O -0.487 6.487 17 C -0.144 4.144 18 C -0.108 4.108 19 C -0.033 4.033 20 Cl -0.061 7.061 21 H 0.290 0.710 22 H 0.296 0.704 23 H 0.335 0.665 24 H 0.373 0.627 25 H 0.381 0.619 26 H 0.133 0.867 27 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -12.933 1.284 13.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.171 4.171 3 Si 0.892 3.108 4 H -0.217 1.217 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.634 4.634 8 H 0.064 0.936 9 C 0.130 3.870 10 H 0.075 0.925 11 N -0.364 5.364 12 C -0.077 4.077 13 C 0.048 3.952 14 O -0.271 6.271 15 C 0.030 3.970 16 O -0.296 6.296 17 C -0.163 4.163 18 C -0.126 4.126 19 C -0.061 4.061 20 Cl -0.032 7.032 21 H 0.103 0.897 22 H 0.106 0.894 23 H 0.152 0.848 24 H 0.228 0.772 25 H 0.236 0.764 26 H 0.151 0.849 27 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.231 -9.912 0.376 10.784 hybrid contribution 0.329 -3.076 0.630 3.157 sum 4.559 -12.989 1.006 13.802 Atomic orbital electron populations 1.70561 1.06724 1.32794 1.42629 1.25588 0.96577 1.01706 0.93229 0.83653 0.74937 0.75752 0.76444 1.21684 1.21590 1.20908 1.21571 0.93358 0.89968 1.58541 0.93650 1.18508 0.87602 0.89687 0.91194 0.92538 1.59564 1.39266 1.30373 1.07178 1.21787 0.98065 0.97216 0.90674 1.18433 0.96133 0.92475 0.88142 1.85086 1.58912 1.52093 1.31015 1.18887 0.95155 0.95051 0.87874 1.84928 1.46189 1.65939 1.32583 1.21018 1.01633 1.01152 0.92514 1.20860 0.95950 0.97191 0.98647 1.20721 0.98292 0.98023 0.89061 1.98346 1.73983 1.94164 1.36668 0.89739 0.89392 0.84772 0.77173 0.76405 0.84891 0.84992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.94 13.51 55.43 0.75 -26.19 15 2 C 0.04 1.11 5.39 -17.82 -0.10 1.01 15 3 Si 1.06 26.00 29.90 -169.99 -5.08 20.92 15 4 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.60 -16.78 8.32 -34.44 -0.29 -17.06 15 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 15 9 C 0.24 5.79 2.21 -70.01 -0.16 5.63 15 10 H 0.06 1.48 6.18 -51.93 -0.32 1.16 15 11 N -0.83 -18.36 7.56 -6.65 -0.05 -18.41 15 12 C -0.07 -1.53 4.79 -104.46 -0.50 -2.03 15 13 C 0.09 1.79 6.47 -39.12 -0.25 1.54 15 14 O -0.46 -8.71 10.88 -34.22 -0.37 -9.08 15 15 C 0.08 1.23 6.72 -39.13 -0.26 0.97 15 16 O -0.49 -6.93 13.29 -34.31 -0.46 -7.38 15 17 C -0.14 -2.09 9.98 -39.47 -0.39 -2.49 15 18 C -0.11 -1.65 9.82 -39.54 -0.39 -2.04 15 19 C -0.03 -0.62 6.31 -39.50 -0.25 -0.87 15 20 Cl -0.06 -1.12 27.05 -51.86 -1.40 -2.52 15 21 H 0.29 8.73 6.39 -40.82 -0.26 8.47 15 22 H 0.30 5.56 8.93 -39.29 -0.35 5.21 15 23 H 0.34 7.24 5.91 -39.30 -0.23 7.00 15 24 H 0.37 5.19 8.05 45.56 0.37 5.55 15 25 H 0.38 3.25 9.06 45.56 0.41 3.66 15 26 H 0.13 1.53 8.06 -52.48 -0.42 1.11 15 27 H 0.13 1.65 8.06 -52.49 -0.42 1.23 15 LS Contribution 251.90 15.07 3.80 3.80 Total: -1.00 -33.50 251.90 -5.84 -39.34 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.43 Total: 14.87 kcal Atomic # 6 Polarization: -12.76 SS G_CDS: -2.59 Total: -15.34 kcal Atomic # 7 Polarization: -45.30 SS G_CDS: 0.70 Total: -44.60 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -0.83 Total: -16.46 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.92 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.40 Total: -2.52 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -33.50 -5.84 -39.34 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.847 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds