Wall clock time and date at job start Mon Mar 30 2020 04:37:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99604 * 2 1 4 4 H 1.48500 * 109.47331 * 240.00391 * 3 2 1 5 5 H 1.48500 * 109.46695 * 120.00846 * 3 2 1 6 6 H 1.48493 * 109.47556 * 0.02562 * 3 2 1 7 7 C 1.37872 * 120.00271 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00276 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99897 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47493 * 59.99823 * 9 7 2 11 11 N 1.46906 * 109.47073 * 299.99597 * 9 7 2 12 12 C 1.50701 * 109.47135 * 179.97438 * 9 7 2 13 13 C 1.38572 * 120.00545 * 73.30305 * 12 9 7 14 14 O 1.35988 * 120.06228 * 359.95212 * 13 12 9 15 15 C 1.39146 * 119.86417 * 179.97438 * 13 12 9 16 16 O 1.36016 * 120.05701 * 179.97438 * 15 13 12 17 17 C 1.38553 * 119.88232 * 359.97438 * 15 13 12 18 18 C 1.38238 * 120.01225 * 0.02562 * 17 15 13 19 19 C 1.38335 * 120.00808 * 253.02266 * 12 9 7 20 20 Cl 1.73604 * 119.93821 * 0.02562 * 19 12 9 21 21 H 0.96999 * 119.99935 * 180.02562 * 1 2 3 22 22 H 1.00902 * 110.99977 * 187.79286 * 11 9 7 23 23 H 1.00891 * 111.00281 * 311.75337 * 11 9 7 24 24 H 0.96700 * 114.00259 * 90.00854 * 14 13 12 25 25 H 0.96698 * 113.99551 * 90.00197 * 16 15 13 26 26 H 1.08005 * 119.99122 * 180.02562 * 17 15 13 27 27 H 1.08001 * 119.93601 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 3.1029 1.6964 1.2124 6 1 1.2841 2.7465 0.0006 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6241 -2.5567 -0.8902 11 7 0.4071 -2.5772 1.1993 12 6 2.2305 -3.6445 -0.0018 13 6 2.9437 -3.9476 1.1469 14 8 2.7617 -3.2118 2.2759 15 6 3.8468 -5.0062 1.1426 16 8 4.5494 -5.3069 2.2678 17 6 4.0291 -5.7534 -0.0099 18 6 3.3150 -5.4466 -1.1530 19 6 2.4133 -4.3971 -1.1480 20 17 1.5142 -4.0204 -2.5845 21 1 -0.4850 -0.8400 0.0004 22 1 -0.0102 -3.4915 1.2890 23 1 0.9317 -2.3364 2.0268 24 1 2.0659 -3.5484 2.8570 25 1 4.1095 -5.9435 2.8477 26 1 4.7293 -6.5757 -0.0150 27 1 3.4577 -6.0301 -2.0505 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260148136.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:52 Heat of formation + Delta-G solvation = -91.606181 kcal Electronic energy + Delta-G solvation = -15672.384025 eV Core-core repulsion = 12841.370165 eV Total energy + Delta-G solvation = -2831.013860 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.045 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.43440 -38.47996 -38.09937 -36.84122 -36.24645 -33.31625 -30.95384 -30.07460 -27.51757 -24.73168 -23.56048 -22.42748 -19.68434 -18.99269 -18.90231 -17.53641 -17.20758 -16.23281 -16.00630 -15.81149 -15.52284 -15.14158 -14.30849 -14.25752 -13.77340 -13.73331 -13.15048 -12.85769 -12.61745 -12.32544 -12.10205 -11.93894 -11.73112 -11.27948 -10.76856 -10.45302 -9.74710 -9.48514 -9.22905 -8.37285 -6.19691 -0.04804 0.14092 1.17844 1.53492 1.60638 1.79976 2.36049 2.63661 3.06068 3.14719 3.34436 3.83335 4.02088 4.27994 4.29739 4.55814 4.77459 4.83192 5.10340 5.15575 5.48376 5.55349 5.91910 6.21757 6.54006 6.67485 6.78989 6.88187 7.09675 7.66020 9.00565 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.022277 B = 0.010162 C = 0.008201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.583850 B = 2754.651280 C = 3413.464443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.008 4.008 3 Si 1.103 2.897 4 H -0.279 1.279 5 H -0.280 1.280 6 H -0.282 1.282 7 C -0.600 4.600 8 H 0.022 0.978 9 C 0.245 3.755 10 H 0.031 0.969 11 N -0.837 5.837 12 C -0.107 4.107 13 C 0.078 3.922 14 O -0.483 6.483 15 C 0.084 3.916 16 O -0.493 6.493 17 C -0.126 4.126 18 C -0.097 4.097 19 C -0.050 4.050 20 Cl -0.070 7.070 21 H 0.280 0.720 22 H 0.315 0.685 23 H 0.338 0.662 24 H 0.390 0.610 25 H 0.408 0.592 26 H 0.175 0.825 27 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -14.669 1.595 15.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.212 4.212 3 Si 0.927 3.073 4 H -0.205 1.205 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.639 4.639 8 H 0.041 0.959 9 C 0.135 3.865 10 H 0.049 0.951 11 N -0.371 5.371 12 C -0.111 4.111 13 C 0.032 3.968 14 O -0.294 6.294 15 C 0.038 3.962 16 O -0.306 6.306 17 C -0.144 4.144 18 C -0.116 4.116 19 C -0.078 4.078 20 Cl -0.041 7.041 21 H 0.091 0.909 22 H 0.127 0.873 23 H 0.155 0.845 24 H 0.247 0.753 25 H 0.267 0.733 26 H 0.192 0.808 27 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 5.881 -11.688 0.709 13.103 hybrid contribution -0.115 -2.697 0.603 2.766 sum 5.766 -14.385 1.311 15.553 Atomic orbital electron populations 1.70669 1.07410 1.32182 1.45239 1.26769 0.96742 1.04944 0.92736 0.83117 0.74243 0.72745 0.77173 1.20473 1.20594 1.20723 1.21784 0.92391 0.92198 1.57521 0.95948 1.18072 0.87911 0.89738 0.90750 0.95103 1.59271 1.39283 1.31907 1.06608 1.21471 0.99280 0.97633 0.92721 1.18620 0.97108 0.93557 0.87550 1.85010 1.59771 1.53194 1.31414 1.18902 0.93861 0.94160 0.89256 1.84861 1.46189 1.67030 1.32509 1.21459 1.00874 1.01116 0.90991 1.21225 0.94270 0.95850 1.00243 1.20946 0.99430 0.99168 0.88238 1.98336 1.74432 1.94391 1.36978 0.90863 0.87310 0.84534 0.75253 0.73258 0.80775 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.62 13.51 21.45 0.29 -56.33 15 2 C -0.01 -0.48 5.39 84.65 0.46 -0.03 15 3 Si 1.10 52.92 29.90 68.60 2.05 54.97 15 4 H -0.28 -12.73 7.11 99.48 0.71 -12.02 15 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 15 6 H -0.28 -13.34 7.11 99.48 0.71 -12.63 15 7 C -0.60 -34.50 8.32 25.60 0.21 -34.29 15 8 H 0.02 1.35 7.74 -2.91 -0.02 1.33 15 9 C 0.24 12.10 2.21 43.42 0.10 12.19 15 10 H 0.03 1.68 6.18 -2.39 -0.01 1.66 15 11 N -0.84 -37.57 7.56 -174.95 -1.32 -38.89 15 12 C -0.11 -4.44 4.79 -19.76 -0.09 -4.54 15 13 C 0.08 2.86 6.47 22.57 0.15 3.00 15 14 O -0.48 -17.91 10.88 -79.54 -0.87 -18.78 15 15 C 0.08 2.47 6.72 22.56 0.15 2.62 15 16 O -0.49 -12.20 13.29 -79.85 -1.06 -13.26 15 17 C -0.13 -3.10 9.98 22.34 0.22 -2.87 15 18 C -0.10 -2.66 9.82 22.30 0.22 -2.44 15 19 C -0.05 -1.83 6.31 22.32 0.14 -1.69 15 20 Cl -0.07 -2.58 27.05 -2.72 -0.07 -2.65 15 21 H 0.28 17.34 6.39 -92.71 -0.59 16.75 15 22 H 0.32 11.96 8.93 -89.69 -0.80 11.16 15 23 H 0.34 14.76 5.91 -89.70 -0.53 14.23 15 24 H 0.39 10.64 8.05 -74.06 -0.60 10.04 15 25 H 0.41 5.32 9.06 -74.06 -0.67 4.64 15 26 H 0.17 2.90 8.06 -2.91 -0.02 2.88 15 27 H 0.17 3.39 8.06 -2.91 -0.02 3.36 15 Total: -1.00 -73.17 251.90 -0.59 -73.76 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: -1.15 Total: 29.22 kcal Atomic # 6 Polarization: -29.59 SS G_CDS: 1.55 Total: -28.03 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -1.03 Total: -95.22 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -1.93 Total: -32.04 kcal Atomic # 14 Polarization: 52.92 SS G_CDS: 2.05 Total: 54.97 kcal Atomic # 17 Polarization: -2.58 SS G_CDS: -0.07 Total: -2.65 kcal Total: -73.17 -0.59 -73.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260148136.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.851 kcal (2) G-P(sol) polarization free energy of solvation -73.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds