Wall clock time and date at job start Mon Mar 30 2020 04:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30899 * 1 3 3 Si 1.86798 * 120.00322 * 2 1 4 4 H 1.48492 * 109.47401 * 89.99317 * 3 2 1 5 5 H 1.48502 * 109.47461 * 210.00096 * 3 2 1 6 6 H 1.48508 * 109.46638 * 329.99722 * 3 2 1 7 7 C 1.39876 * 119.99921 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99998 * 17.18641 * 7 2 1 9 9 C 1.41221 * 120.00199 * 197.18089 * 7 2 1 10 10 C 1.41169 * 120.97234 * 28.27769 * 9 7 2 11 11 N 1.31789 * 118.87885 * 179.71634 * 10 9 7 12 12 C 1.32811 * 121.03976 * 0.56971 * 11 10 9 13 13 N 1.37939 * 118.90748 * 179.68187 * 12 11 10 14 14 N 1.32751 * 122.19070 * 359.70050 * 12 11 10 15 15 C 1.31909 * 120.99256 * 359.97438 * 14 12 11 16 16 Br 1.89106 * 120.57504 * 180.02562 * 15 14 12 17 17 H 0.97000 * 120.00000 * 175.45914 * 1 2 3 18 18 H 1.08002 * 120.56076 * 359.97383 * 10 9 7 19 19 H 0.96996 * 120.00480 * 180.02562 * 13 12 11 20 20 H 0.96998 * 119.99953 * 0.02562 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4905 2.0465 1.4000 5 1 3.5406 1.4401 -0.7000 6 1 1.4405 2.6526 -0.7002 7 6 2.0084 -1.2114 0.0005 8 1 1.5045 -2.1260 -0.2754 9 6 3.3733 -1.2386 0.3618 10 6 3.9082 -0.2829 1.2525 11 7 5.1866 -0.3502 1.5658 12 6 5.9697 -1.2903 1.0492 13 7 7.3028 -1.3158 1.4023 14 7 5.5122 -2.2059 0.2038 15 6 4.2449 -2.2200 -0.1618 16 35 3.6057 -3.5303 -1.3662 17 1 -0.4850 -0.8374 -0.0665 18 1 3.2796 0.4879 1.6734 19 1 7.8892 -1.9952 1.0342 20 1 7.6540 -0.6544 2.0189 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260781820.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:50 Heat of formation + Delta-G solvation = 38.421174 kcal Electronic energy + Delta-G solvation = -10338.474863 eV Core-core repulsion = 8195.131383 eV Total energy + Delta-G solvation = -2143.343480 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.970 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.50468 -34.84679 -33.25688 -32.70697 -30.34641 -29.33859 -24.69154 -23.22688 -21.36372 -18.66945 -17.11582 -16.77618 -14.73009 -14.58333 -14.13390 -13.66549 -13.21592 -12.89311 -12.28122 -11.14320 -10.85459 -10.65948 -10.34404 -9.97693 -9.71235 -9.33719 -9.06359 -8.93115 -8.10372 -7.71863 -7.31190 -4.64756 2.06024 2.36771 2.47015 3.05705 3.20595 3.37398 3.82577 4.28108 4.44998 5.16933 5.43331 5.99451 6.20718 6.64297 6.96113 7.32847 7.68373 7.95692 8.03508 8.15508 8.35860 8.55359 9.44526 9.79957 Molecular weight = 242.97amu Principal moments of inertia in cm(-1) A = 0.022489 B = 0.016204 C = 0.009914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.741158 B = 1727.574116 C = 2823.554794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.043 3.957 3 Si 1.061 2.939 4 H -0.269 1.269 5 H -0.265 1.265 6 H -0.279 1.279 7 C -0.479 4.479 8 H 0.095 0.905 9 C -0.011 4.011 10 C 0.054 3.946 11 N -0.520 5.520 12 C 0.440 3.560 13 N -0.848 5.848 14 N -0.514 5.514 15 C 0.084 3.916 16 Br -0.040 7.040 17 H 0.291 0.709 18 H 0.155 0.845 19 H 0.400 0.600 20 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -2.284 -1.056 5.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C -0.179 4.179 3 Si 0.886 3.114 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.206 1.206 7 C -0.508 4.508 8 H 0.113 0.887 9 C -0.022 4.022 10 C -0.119 4.119 11 N -0.240 5.240 12 C 0.084 3.916 13 N -0.402 5.402 14 N -0.235 5.235 15 C -0.143 4.143 16 Br 0.043 6.957 17 H 0.103 0.897 18 H 0.172 0.828 19 H 0.228 0.772 20 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.558 -1.217 -1.238 5.822 hybrid contribution -0.285 -1.569 0.105 1.598 sum 5.273 -2.786 -1.133 6.070 Atomic orbital electron populations 1.70539 1.07833 1.33487 1.30020 1.27231 0.95745 1.04155 0.90780 0.83769 0.75711 0.73527 0.78386 1.19531 1.19015 1.20554 1.20600 0.93498 0.97618 1.39125 0.88694 1.18934 0.95390 0.93432 0.94396 1.22959 0.90336 1.00871 0.97748 1.67218 1.06492 1.23481 1.26786 1.18497 0.87474 0.90592 0.95064 1.40970 1.05186 1.38473 1.55549 1.66769 1.16089 1.25487 1.15200 1.22501 0.89911 0.99432 1.02493 1.96428 1.87113 1.53008 1.59184 0.89702 0.82787 0.77175 0.77060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -19.88 13.66 55.54 0.76 -19.13 14 2 C 0.04 1.04 5.44 -17.34 -0.09 0.95 14 3 Si 1.06 22.71 24.89 -169.99 -4.23 18.48 14 4 H -0.27 -5.37 6.43 56.52 0.36 -5.01 14 5 H -0.27 -5.87 6.99 56.52 0.40 -5.48 14 6 H -0.28 -5.77 7.11 56.52 0.40 -5.37 14 7 C -0.48 -12.05 8.86 -37.84 -0.34 -12.38 14 8 H 0.10 2.44 7.27 -52.48 -0.38 2.06 14 9 C -0.01 -0.27 5.17 -106.48 -0.55 -0.82 14 10 C 0.05 1.30 8.56 -16.46 -0.14 1.16 14 11 N -0.52 -12.20 10.42 -13.36 -0.14 -12.34 14 12 C 0.44 9.90 8.65 -322.74 -2.79 7.11 14 13 N -0.85 -14.55 9.04 29.77 0.27 -14.28 14 14 N -0.51 -12.20 10.41 -11.75 -0.12 -12.32 14 15 C 0.08 2.05 7.29 -16.35 -0.12 1.93 14 16 Br -0.04 -0.85 32.51 -68.01 -2.21 -3.06 14 17 H 0.29 7.06 8.73 -40.82 -0.36 6.70 14 18 H 0.16 3.51 4.39 -52.49 -0.23 3.28 14 19 H 0.40 5.98 8.94 -40.82 -0.36 5.61 14 20 H 0.40 5.89 8.94 -40.82 -0.36 5.53 14 LS Contribution 203.70 15.07 3.07 3.07 Total: -1.00 -27.14 203.70 -7.18 -34.32 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: -0.54 Total: 7.33 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -4.03 Total: -2.07 kcal Atomic # 7 Polarization: -58.84 SS G_CDS: 0.77 Total: -58.07 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.23 Total: 18.48 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.21 Total: -3.06 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -27.14 -7.18 -34.32 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260781820.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.738 kcal (2) G-P(sol) polarization free energy of solvation -27.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds