Wall clock time and date at job start Mon Mar 30 2020 04:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 119.99785 * 2 1 4 4 H 1.48507 * 109.47206 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47333 * 300.00182 * 3 2 1 6 6 H 1.48503 * 109.47189 * 60.00415 * 3 2 1 7 7 C 1.40099 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99703 * 180.02562 * 7 2 1 9 9 C 1.41542 * 120.00253 * 359.97438 * 7 2 1 10 10 C 1.40877 * 120.61085 * 179.97438 * 9 7 2 11 11 C 1.38505 * 118.29452 * 180.02562 * 10 9 7 12 12 Br 1.89106 * 120.33712 * 179.97438 * 11 10 9 13 13 N 1.32442 * 119.32158 * 359.74235 * 11 10 9 14 14 C 1.32720 * 121.20139 * 0.52050 * 13 11 10 15 15 N 1.38395 * 119.06327 * 179.75029 * 14 13 11 16 16 N 1.32098 * 121.87223 * 359.47003 * 14 13 11 17 17 H 0.96998 * 120.00400 * 359.97438 * 1 2 3 18 18 H 1.07992 * 120.85293 * 0.02562 * 10 9 7 19 19 H 0.97000 * 119.99298 * 179.72612 * 15 14 13 20 20 H 0.96995 * 120.00056 * 359.45156 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.7008 1.3465 -0.0006 5 1 1.8819 2.3965 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0072 -1.2133 -0.0005 8 1 3.0873 -1.2132 -0.0001 9 6 1.2996 -2.4391 -0.0005 10 6 1.9910 -3.6665 -0.0016 11 6 1.2506 -4.8371 -0.0021 12 35 2.1193 -6.5168 -0.0043 13 7 -0.0720 -4.7680 0.0036 14 6 -0.6994 -3.5984 -0.0005 15 7 -2.0832 -3.5778 0.0006 16 7 -0.0406 -2.4535 0.0000 17 1 -0.4850 0.8400 0.0004 18 1 3.0705 -3.6941 -0.0021 19 1 -2.5555 -2.7306 0.0016 20 1 -2.5806 -4.4105 -0.0038 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260792547.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:02 Heat of formation + Delta-G solvation = 24.729175 kcal Electronic energy + Delta-G solvation = -10212.412083 eV Core-core repulsion = 8068.474874 eV Total energy + Delta-G solvation = -2143.937209 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.970 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.81191 -36.21606 -35.24806 -33.50453 -31.75670 -30.38796 -28.20743 -23.84300 -23.42192 -19.82852 -18.35639 -17.49058 -16.64463 -15.95858 -15.81614 -15.45458 -14.72586 -14.24339 -13.05649 -12.93891 -12.72418 -12.52392 -11.88765 -11.77671 -11.38202 -11.12543 -10.78904 -10.42229 -9.41884 -8.87356 -8.37954 -6.82128 0.53218 0.72822 0.92418 1.45119 1.58324 1.61086 2.21944 2.83107 2.83664 3.83422 4.22615 4.66930 4.84522 5.10961 5.14331 5.48578 6.03829 6.33466 6.59647 6.73998 6.84591 7.15502 8.24020 8.35571 Molecular weight = 242.97amu Principal moments of inertia in cm(-1) A = 0.040480 B = 0.008320 C = 0.006918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.531299 B = 3364.731446 C = 4046.419550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.735 5.735 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.266 1.266 7 C -0.433 4.433 8 H 0.103 0.897 9 C 0.266 3.734 10 C -0.331 4.331 11 C 0.192 3.808 12 Br -0.021 7.021 13 N -0.659 5.659 14 C 0.548 3.452 15 N -0.821 5.821 16 N -0.583 5.583 17 H 0.285 0.715 18 H 0.130 0.870 19 H 0.412 0.588 20 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.012 -3.918 -0.024 4.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.201 4.201 3 Si 0.814 3.186 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.121 0.879 9 C 0.135 3.865 10 C -0.364 4.364 11 C -0.025 4.025 12 Br 0.062 6.938 13 N -0.392 5.392 14 C 0.186 3.814 15 N -0.373 5.373 16 N -0.313 5.313 17 H 0.096 0.904 18 H 0.148 0.852 19 H 0.243 0.757 20 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 1.199 -4.451 -0.015 4.610 hybrid contribution 0.409 0.725 -0.006 0.832 sum 1.608 -3.726 -0.021 4.059 Atomic orbital electron populations 1.70151 1.09088 1.29820 1.26609 1.27109 0.95829 1.04791 0.92346 0.84958 0.79544 0.75218 0.78842 1.17332 1.19047 1.19041 1.20163 0.95375 0.89424 1.41766 0.87867 1.19002 0.87637 0.92921 0.86973 1.22272 1.00604 0.92426 1.21085 1.22362 0.91276 0.91119 0.97768 1.96497 1.75479 1.24209 1.97579 1.67233 1.09267 1.28644 1.34081 1.19896 0.88349 0.84998 0.88202 1.41354 1.00167 1.11677 1.84060 1.68948 1.09063 1.24621 1.28668 0.90396 0.85241 0.75709 0.75897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -36.90 11.52 21.85 0.25 -36.65 14 2 C 0.02 1.14 5.50 85.32 0.47 1.61 14 3 Si 1.00 35.09 29.56 68.60 2.03 37.12 14 4 H -0.25 -8.44 7.11 99.48 0.71 -7.73 14 5 H -0.27 -9.06 7.11 99.48 0.71 -8.36 14 6 H -0.27 -9.06 7.11 99.48 0.71 -8.35 14 7 C -0.43 -22.17 9.19 23.54 0.22 -21.96 14 8 H 0.10 4.84 7.85 -2.91 -0.02 4.82 14 9 C 0.27 14.49 6.58 40.27 0.26 14.75 14 10 C -0.33 -16.47 9.70 22.98 0.22 -16.25 14 11 C 0.19 9.14 7.22 84.66 0.61 9.75 14 12 Br -0.02 -0.77 33.91 -20.37 -0.69 -1.46 14 13 N -0.66 -32.48 10.42 -193.13 -2.01 -34.49 14 14 C 0.55 27.35 8.66 261.57 2.27 29.62 14 15 N -0.82 -32.11 9.07 -59.85 -0.54 -32.66 14 16 N -0.58 -31.92 8.06 -191.51 -1.54 -33.46 14 17 H 0.29 12.71 8.29 -92.71 -0.77 11.95 14 18 H 0.13 5.86 8.06 -2.91 -0.02 5.83 14 19 H 0.41 15.00 8.94 -92.71 -0.83 14.17 14 20 H 0.41 13.52 8.94 -92.71 -0.83 12.69 14 Total: -1.00 -60.26 212.79 1.19 -59.07 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: -0.35 Total: 25.02 kcal Atomic # 6 Polarization: 13.47 SS G_CDS: 4.05 Total: 17.52 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -3.85 Total: -137.26 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 35 Polarization: -0.77 SS G_CDS: -0.69 Total: -1.46 kcal Total: -60.26 1.19 -59.07 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260792547.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.802 kcal (2) G-P(sol) polarization free energy of solvation -60.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds