Wall clock time and date at job start Mon Mar 30 2020 04:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31251 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48509 * 109.47017 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47277 * 120.00324 * 3 2 1 7 7 C 1.39005 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99721 * 359.97438 * 7 2 1 10 10 N 1.40191 * 126.86566 * 359.81155 * 9 7 2 11 11 N 1.28600 * 107.96192 * 179.97438 * 10 9 7 12 12 C 1.33893 * 110.06690 * 0.29433 * 11 10 9 13 13 C 1.34467 * 108.97410 * 359.73124 * 12 11 10 14 14 C 1.50436 * 128.72531 * 180.39189 * 13 12 11 15 15 C 1.52811 * 110.85213 * 341.14833 * 14 13 12 16 16 S 1.81797 * 108.81968 * 52.13329 * 15 14 13 17 17 O 1.42107 * 108.73042 * 48.59515 * 16 15 14 18 18 O 1.42094 * 108.73625 * 180.02562 * 16 15 14 19 19 C 1.51290 * 124.35111 * 179.65676 * 12 11 10 20 20 H 0.97004 * 120.00381 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.19749 * 101.50005 * 14 13 12 22 22 H 1.08998 * 109.19972 * 220.78883 * 14 13 12 23 23 H 1.09008 * 109.58026 * 171.93410 * 15 14 13 24 24 H 1.08999 * 109.58081 * 292.33255 * 15 14 13 25 25 H 1.09003 * 109.61715 * 41.82162 * 19 12 11 26 26 H 1.09004 * 109.76737 * 281.38191 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.1002 1.6965 -1.2126 5 1 1.2815 2.7465 -0.0006 6 1 3.1002 1.6965 1.2124 7 6 2.0076 -1.2038 -0.0005 8 1 3.0876 -1.2038 -0.0010 9 7 1.3197 -2.3952 -0.0005 10 7 -0.0721 -2.5628 0.0037 11 7 -0.3196 -3.8247 0.0015 12 6 0.8261 -4.5176 0.0026 13 6 1.8583 -3.6557 -0.0004 14 6 3.3329 -3.9534 -0.0086 15 6 3.6009 -5.3869 0.4478 16 16 2.5731 -6.5178 -0.5369 17 8 2.7187 -6.1870 -1.9113 18 8 2.8233 -7.8500 -0.1107 19 6 0.9102 -6.0281 0.0083 20 1 -0.4851 0.8400 -0.0004 21 1 3.7197 -3.8206 -1.0189 22 1 3.8418 -3.2621 0.6631 23 1 4.6538 -5.6269 0.2988 24 1 3.3471 -5.4878 1.5030 25 1 0.1657 -6.4387 -0.6738 26 1 0.7300 -6.4036 1.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260800526.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:46 Heat of formation + Delta-G solvation = 18.842638 kcal Electronic energy + Delta-G solvation = -15679.597193 eV Core-core repulsion = 12887.709211 eV Total energy + Delta-G solvation = -2791.887982 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.55065 -36.74358 -35.73760 -34.45564 -34.25623 -31.88709 -30.22301 -26.94904 -25.42953 -23.69989 -21.41120 -19.57130 -18.18744 -17.95173 -16.23970 -15.99095 -15.71590 -15.38450 -14.76117 -14.42534 -13.84309 -13.42809 -12.86208 -12.62083 -12.52849 -11.91026 -11.83674 -11.73769 -11.64469 -11.55556 -11.41511 -10.81183 -10.74998 -10.16208 -10.07930 -9.85461 -9.38392 -8.83849 -7.60341 -7.01173 -4.82115 0.33664 2.64133 2.84749 2.90768 2.91435 3.08488 3.52835 3.75793 3.92128 4.12655 4.46636 4.61717 4.88855 4.93489 5.27897 5.49135 5.51181 5.75834 5.80993 6.03084 6.14408 6.56486 6.59457 6.83971 7.40952 7.69377 8.28054 8.85915 9.92162 9.96211 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.007531 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.527780 B = 3716.941111 C = 4120.081428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.751 5.751 2 C 0.046 3.954 3 Si 0.946 3.054 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.262 1.262 7 C -0.304 4.304 8 H 0.126 0.874 9 N -0.134 5.134 10 N -0.085 5.085 11 N -0.311 5.311 12 C -0.062 4.062 13 C -0.109 4.109 14 C -0.013 4.013 15 C -0.589 4.589 16 S 2.422 3.578 17 O -0.934 6.934 18 O -0.954 6.954 19 C -0.487 4.487 20 H 0.287 0.713 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.133 0.867 24 H 0.133 0.867 25 H 0.134 0.866 26 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.513 -3.865 1.909 8.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.175 4.175 3 Si 0.768 3.232 4 H -0.185 1.185 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.442 4.442 8 H 0.143 0.857 9 N 0.096 4.904 10 N -0.061 5.061 11 N -0.171 5.171 12 C -0.210 4.210 13 C -0.244 4.244 14 C -0.053 4.053 15 C -0.720 4.720 16 S 2.604 3.396 17 O -0.931 6.931 18 O -0.951 6.951 19 C -0.619 4.619 20 H 0.098 0.902 21 H 0.104 0.896 22 H 0.106 0.894 23 H 0.151 0.849 24 H 0.151 0.849 25 H 0.152 0.848 26 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 6.042 -3.711 1.284 7.206 hybrid contribution 1.038 0.971 0.680 1.576 sum 7.080 -2.740 1.964 7.842 Atomic orbital electron populations 1.70119 1.06551 1.29747 1.31218 1.25849 0.95878 1.01045 0.94748 0.85698 0.79225 0.78292 0.80019 1.18538 1.19657 1.18640 1.20242 0.92534 0.80352 1.51057 0.85684 1.46709 1.06664 1.03791 1.33277 1.82511 0.88251 1.06479 1.28851 1.74093 1.24518 1.00800 1.17640 1.19134 0.90243 0.91669 1.19980 1.20464 0.94680 0.86617 1.22614 1.19171 0.90634 0.92611 1.02879 1.29934 1.14967 1.11573 1.15478 1.07803 0.79329 0.75671 0.76749 1.93571 1.84968 1.84996 1.29600 1.93559 1.84264 1.33244 1.84054 1.28398 1.22269 0.99354 1.11864 0.90219 0.89565 0.89375 0.84853 0.84888 0.84772 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -19.32 11.88 55.49 0.66 -18.66 15 2 C 0.05 1.08 5.50 -17.52 -0.10 0.98 15 3 Si 0.95 16.98 29.55 -169.99 -5.02 11.96 15 4 H -0.26 -4.56 7.11 56.52 0.40 -4.16 15 5 H -0.27 -4.85 7.11 56.52 0.40 -4.45 15 6 H -0.26 -4.53 7.11 56.52 0.40 -4.13 15 7 C -0.30 -7.34 10.01 -14.69 -0.15 -7.49 15 8 H 0.13 2.60 7.30 -52.49 -0.38 2.21 15 9 N -0.13 -3.48 3.79 -7.87 -0.03 -3.51 15 10 N -0.08 -2.43 11.72 60.35 0.71 -1.72 15 11 N -0.31 -8.28 12.33 33.30 0.41 -7.87 15 12 C -0.06 -1.39 6.86 -82.74 -0.57 -1.95 15 13 C -0.11 -2.43 6.67 -81.71 -0.55 -2.98 15 14 C -0.01 -0.21 5.26 -28.11 -0.15 -0.36 15 15 C -0.59 -7.51 6.39 37.06 0.24 -7.27 15 16 S 2.42 36.27 5.34 -107.50 -0.57 35.70 15 17 O -0.93 -17.39 17.86 -57.81 -1.03 -18.42 15 18 O -0.95 -15.55 18.11 -57.81 -1.05 -16.60 15 19 C -0.49 -8.09 6.75 36.30 0.25 -7.84 15 20 H 0.29 6.66 8.31 -40.82 -0.34 6.32 15 21 H 0.09 1.38 8.14 -51.93 -0.42 0.96 15 22 H 0.09 1.34 7.78 -51.93 -0.40 0.93 15 23 H 0.13 1.27 8.14 -51.92 -0.42 0.85 15 24 H 0.13 1.44 8.14 -51.93 -0.42 1.02 15 25 H 0.13 2.09 8.14 -51.93 -0.42 1.67 15 26 H 0.13 1.77 8.14 -51.93 -0.42 1.35 15 LS Contribution 243.45 15.07 3.67 3.67 Total: -1.00 -34.49 243.45 -5.32 -39.81 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.04 Total: 2.56 kcal Atomic # 6 Polarization: -25.89 SS G_CDS: -1.02 Total: -26.91 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: 1.75 Total: -31.76 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -2.08 Total: -35.02 kcal Atomic # 14 Polarization: 16.98 SS G_CDS: -5.02 Total: 11.96 kcal Atomic # 16 Polarization: 36.27 SS G_CDS: -0.57 Total: 35.70 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -34.49 -5.32 -39.81 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800526.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.650 kcal (2) G-P(sol) polarization free energy of solvation -34.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds