Wall clock time and date at job start Mon Mar 30 2020 04:39:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31251 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48509 * 109.47017 * 240.00159 * 3 2 1 5 5 H 1.48499 * 109.47393 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47277 * 120.00324 * 3 2 1 7 7 C 1.39005 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00145 * 179.97438 * 7 2 1 9 9 N 1.37568 * 119.99721 * 359.97438 * 7 2 1 10 10 N 1.40191 * 126.86566 * 359.81155 * 9 7 2 11 11 N 1.28600 * 107.96192 * 179.97438 * 10 9 7 12 12 C 1.33893 * 110.06690 * 0.29433 * 11 10 9 13 13 C 1.34467 * 108.97410 * 359.73124 * 12 11 10 14 14 C 1.50436 * 128.72531 * 180.39189 * 13 12 11 15 15 C 1.52811 * 110.85213 * 341.14833 * 14 13 12 16 16 S 1.81797 * 108.81968 * 52.13329 * 15 14 13 17 17 O 1.42107 * 108.73042 * 48.59515 * 16 15 14 18 18 O 1.42094 * 108.73625 * 180.02562 * 16 15 14 19 19 C 1.51290 * 124.35111 * 179.65676 * 12 11 10 20 20 H 0.97004 * 120.00381 * 0.02562 * 1 2 3 21 21 H 1.08997 * 109.19749 * 101.50005 * 14 13 12 22 22 H 1.08998 * 109.19972 * 220.78883 * 14 13 12 23 23 H 1.09008 * 109.58026 * 171.93410 * 15 14 13 24 24 H 1.08999 * 109.58081 * 292.33255 * 15 14 13 25 25 H 1.09003 * 109.61715 * 41.82162 * 19 12 11 26 26 H 1.09004 * 109.76737 * 281.38191 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.1002 1.6965 -1.2126 5 1 1.2815 2.7465 -0.0006 6 1 3.1002 1.6965 1.2124 7 6 2.0076 -1.2038 -0.0005 8 1 3.0876 -1.2038 -0.0010 9 7 1.3197 -2.3952 -0.0005 10 7 -0.0721 -2.5628 0.0037 11 7 -0.3196 -3.8247 0.0015 12 6 0.8261 -4.5176 0.0026 13 6 1.8583 -3.6557 -0.0004 14 6 3.3329 -3.9534 -0.0086 15 6 3.6009 -5.3869 0.4478 16 16 2.5731 -6.5178 -0.5369 17 8 2.7187 -6.1870 -1.9113 18 8 2.8233 -7.8500 -0.1107 19 6 0.9102 -6.0281 0.0083 20 1 -0.4851 0.8400 -0.0004 21 1 3.7197 -3.8206 -1.0189 22 1 3.8418 -3.2621 0.6631 23 1 4.6538 -5.6269 0.2988 24 1 3.3471 -5.4878 1.5030 25 1 0.1657 -6.4387 -0.6738 26 1 0.7300 -6.4036 1.0156 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260800526.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:46 Heat of formation + Delta-G solvation = -9.532044 kcal Electronic energy + Delta-G solvation = -15680.827612 eV Core-core repulsion = 12887.709211 eV Total energy + Delta-G solvation = -2793.118401 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.046 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.33982 -38.04300 -37.04705 -36.22820 -35.65813 -33.62739 -31.70496 -28.53590 -27.19003 -25.06543 -23.22637 -21.15244 -19.65625 -19.49563 -17.67161 -17.43997 -17.08821 -16.79171 -16.28634 -15.98218 -15.25119 -14.83485 -14.28240 -14.11927 -13.87175 -13.38994 -13.32346 -13.15937 -13.04288 -12.98814 -12.74908 -12.17951 -12.14400 -11.73035 -11.68769 -11.48643 -11.02298 -10.63708 -9.36637 -8.75385 -6.68579 -0.86891 0.97598 1.37804 1.57119 1.62157 1.71532 1.96910 2.02882 2.55246 2.74990 2.87285 3.12075 3.58867 3.80254 3.92704 4.19332 4.26531 4.36991 4.56169 4.79103 4.84501 4.96596 4.96759 5.18728 5.74244 5.90502 6.52057 7.07342 8.06688 8.24729 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.045926 B = 0.007531 C = 0.006794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.527780 B = 3716.941111 C = 4120.081428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C -0.002 4.002 3 Si 1.028 2.972 4 H -0.249 1.249 5 H -0.275 1.275 6 H -0.245 1.245 7 C -0.330 4.330 8 H 0.157 0.843 9 N -0.153 5.153 10 N -0.149 5.149 11 N -0.354 5.354 12 C -0.064 4.064 13 C -0.116 4.116 14 C -0.018 4.018 15 C -0.568 4.568 16 S 2.449 3.551 17 O -0.973 6.973 18 O -0.963 6.963 19 C -0.501 4.501 20 H 0.290 0.710 21 H 0.094 0.906 22 H 0.110 0.890 23 H 0.181 0.819 24 H 0.161 0.839 25 H 0.136 0.864 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.723 -4.010 2.716 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.218 4.218 3 Si 0.845 3.155 4 H -0.173 1.173 5 H -0.200 1.200 6 H -0.168 1.168 7 C -0.467 4.467 8 H 0.174 0.826 9 N 0.076 4.924 10 N -0.124 5.124 11 N -0.212 5.212 12 C -0.213 4.213 13 C -0.251 4.251 14 C -0.058 4.058 15 C -0.700 4.700 16 S 2.633 3.367 17 O -0.970 6.970 18 O -0.960 6.960 19 C -0.631 4.631 20 H 0.100 0.900 21 H 0.112 0.888 22 H 0.128 0.872 23 H 0.198 0.802 24 H 0.179 0.821 25 H 0.155 0.845 26 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 9.204 -3.911 2.079 10.214 hybrid contribution 0.087 0.922 0.446 1.028 sum 9.291 -2.989 2.526 10.082 Atomic orbital electron populations 1.70288 1.08932 1.30940 1.32912 1.27171 0.96497 1.05017 0.93099 0.84517 0.77658 0.72450 0.80913 1.17263 1.20008 1.16839 1.21135 0.94116 0.80412 1.51059 0.82558 1.47071 1.06352 1.05527 1.33483 1.82437 0.90327 1.07462 1.32170 1.74044 1.26604 1.00987 1.19567 1.20058 0.89338 0.94425 1.17495 1.21531 0.97541 0.85313 1.20665 1.19426 0.86712 0.95488 1.04217 1.29837 1.16734 1.07404 1.16059 1.06984 0.78241 0.75532 0.75908 1.93524 1.85192 1.85650 1.32663 1.93547 1.83934 1.34407 1.84081 1.28695 1.24795 0.95521 1.14059 0.90003 0.88815 0.87182 0.80190 0.82078 0.84548 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -42.87 11.88 21.66 0.26 -42.61 15 2 C 0.00 -0.09 5.50 84.96 0.47 0.37 15 3 Si 1.03 33.82 29.55 68.60 2.03 35.85 15 4 H -0.25 -7.65 7.11 99.48 0.71 -6.94 15 5 H -0.28 -9.08 7.11 99.48 0.71 -8.37 15 6 H -0.24 -7.34 7.11 99.48 0.71 -6.63 15 7 C -0.33 -15.81 10.01 83.98 0.84 -14.97 15 8 H 0.16 6.14 7.30 -2.91 -0.02 6.12 15 9 N -0.15 -8.05 3.79 -178.80 -0.68 -8.73 15 10 N -0.15 -8.89 11.72 37.02 0.43 -8.45 15 11 N -0.35 -19.58 12.33 -48.56 -0.60 -20.18 15 12 C -0.06 -2.87 6.86 41.57 0.29 -2.59 15 13 C -0.12 -5.08 6.67 40.79 0.27 -4.81 15 14 C -0.02 -0.55 5.26 29.70 0.16 -0.39 15 15 C -0.57 -11.63 6.39 71.92 0.46 -11.17 15 16 S 2.45 66.69 5.34 -56.49 -0.30 66.39 15 17 O -0.97 -34.69 17.86 -127.39 -2.27 -36.96 15 18 O -0.96 -28.35 18.11 -127.39 -2.31 -30.66 15 19 C -0.50 -16.07 6.75 71.42 0.48 -15.58 15 20 H 0.29 14.02 8.31 -92.71 -0.77 13.25 15 21 H 0.09 2.69 8.14 -2.39 -0.02 2.67 15 22 H 0.11 2.84 7.78 -2.39 -0.02 2.83 15 23 H 0.18 2.19 8.14 -2.38 -0.02 2.17 15 24 H 0.16 2.55 8.14 -2.39 -0.02 2.53 15 25 H 0.14 4.25 8.14 -2.39 -0.02 4.23 15 26 H 0.16 4.03 8.14 -2.39 -0.02 4.01 15 Total: -1.00 -79.36 243.45 0.74 -78.62 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.21 Total: 15.86 kcal Atomic # 6 Polarization: -52.09 SS G_CDS: 2.96 Total: -49.13 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -0.58 Total: -79.97 kcal Atomic # 8 Polarization: -63.04 SS G_CDS: -4.58 Total: -67.62 kcal Atomic # 14 Polarization: 33.82 SS G_CDS: 2.03 Total: 35.85 kcal Atomic # 16 Polarization: 66.69 SS G_CDS: -0.30 Total: 66.39 kcal Total: -79.36 0.74 -78.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260800526.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.088 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds