Wall clock time and date at job start Mon Mar 30 2020 04:31:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86801 * 119.99722 * 2 1 4 4 H 1.48504 * 109.47209 * 270.00205 * 3 2 1 5 5 H 1.48506 * 109.47294 * 30.00053 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99956 * 3 2 1 7 7 C 1.40069 * 120.00386 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00338 * 180.02562 * 7 2 1 9 9 C 1.41597 * 119.99908 * 359.71981 * 7 2 1 10 10 C 1.40544 * 120.61933 * 179.97438 * 9 7 2 11 11 C 1.39449 * 118.09398 * 179.76674 * 10 9 7 12 12 N 1.38597 * 120.45929 * 180.25752 * 11 10 9 13 13 N 1.33023 * 119.07997 * 0.51554 * 11 10 9 14 14 C 1.32073 * 121.16578 * 359.74204 * 13 11 10 15 15 Br 1.89098 * 118.93919 * 180.02562 * 14 13 11 16 16 N 1.31479 * 122.12688 * 359.97438 * 14 13 11 17 17 H 0.96995 * 120.00257 * 359.97438 * 1 2 3 18 18 H 1.08001 * 120.95278 * 0.02562 * 10 9 7 19 19 H 0.97002 * 119.99961 * 180.25698 * 12 11 10 20 20 H 0.97001 * 119.99901 * 0.25917 * 12 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4883 2.0465 -1.4001 5 1 1.4383 2.6527 0.7001 6 1 3.5384 1.4403 0.7000 7 6 2.0074 -1.2130 -0.0005 8 1 3.0874 -1.2130 -0.0001 9 6 1.2995 -2.4393 0.0049 10 6 1.9890 -3.6639 0.0039 11 6 1.2394 -4.8397 0.0145 12 7 1.8690 -6.0744 0.0193 13 7 -0.0885 -4.7599 0.0145 14 6 -0.7029 -3.5908 0.0099 15 35 -2.5935 -3.5507 0.0111 16 7 -0.0426 -2.4539 0.0055 17 1 -0.4850 0.8400 0.0004 18 1 3.0686 -3.6935 -0.0006 19 1 1.3410 -6.8881 0.0229 20 1 2.8377 -6.1248 0.0192 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260832944.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:04 Heat of formation + Delta-G solvation = 19.201009 kcal Electronic energy + Delta-G solvation = -10208.367125 eV Core-core repulsion = 8064.190197 eV Total energy + Delta-G solvation = -2144.176929 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.970 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.80824 -36.43769 -35.37180 -33.16712 -31.83200 -30.43756 -28.05814 -23.91802 -23.45472 -19.76894 -18.57749 -17.44511 -16.67775 -15.85250 -15.56712 -15.46125 -14.89406 -14.37686 -13.05451 -12.96308 -12.73064 -12.55652 -11.92332 -11.81051 -11.25047 -10.96225 -10.93241 -10.18991 -9.54994 -8.91422 -8.39181 -6.77191 0.48495 0.59886 1.15597 1.43797 1.57919 1.60682 2.21522 2.80935 2.92568 3.78770 4.26632 4.63636 4.84319 5.14691 5.21182 5.50339 6.02868 6.43195 6.50330 6.72466 6.76307 7.38045 7.99249 8.35131 Molecular weight = 242.97amu Principal moments of inertia in cm(-1) A = 0.026662 B = 0.011206 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.935610 B = 2498.084725 C = 3538.173482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.739 5.739 2 C 0.024 3.976 3 Si 0.995 3.005 4 H -0.261 1.261 5 H -0.268 1.268 6 H -0.252 1.252 7 C -0.439 4.439 8 H 0.102 0.898 9 C 0.254 3.746 10 C -0.403 4.403 11 C 0.428 3.572 12 N -0.834 5.834 13 N -0.653 5.653 14 C 0.335 3.665 15 Br 0.016 6.984 16 N -0.534 5.534 17 H 0.286 0.714 18 H 0.126 0.874 19 H 0.404 0.596 20 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.106 -3.297 0.038 3.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.360 5.360 2 C -0.201 4.201 3 Si 0.814 3.186 4 H -0.186 1.186 5 H -0.192 1.192 6 H -0.175 1.175 7 C -0.472 4.472 8 H 0.120 0.880 9 C 0.128 3.872 10 C -0.433 4.433 11 C 0.188 3.812 12 N -0.381 5.381 13 N -0.391 5.391 14 C -0.017 4.017 15 Br 0.097 6.903 16 N -0.260 5.260 17 H 0.097 0.903 18 H 0.144 0.856 19 H 0.234 0.766 20 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -1.893 -3.066 0.043 3.604 hybrid contribution 1.576 0.109 -0.007 1.580 sum -0.317 -2.958 0.037 2.975 Atomic orbital electron populations 1.70177 1.09079 1.29999 1.26714 1.27136 0.95774 1.04897 0.92292 0.85021 0.78983 0.75033 0.79587 1.18597 1.19241 1.17525 1.20099 0.95211 0.89516 1.42333 0.88028 1.19033 0.87374 0.93631 0.87201 1.21802 1.00133 0.92481 1.28928 1.18310 0.87867 0.87343 0.87652 1.41754 1.09299 1.03187 1.83847 1.67411 1.09361 1.28530 1.33752 1.23982 0.93860 0.87007 0.96861 1.96439 0.97300 1.98965 1.97613 1.69188 1.09169 1.25665 1.21970 0.90339 0.85643 0.76617 0.75248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.76 11.52 21.84 0.25 -38.50 14 2 C 0.02 1.15 5.50 85.31 0.47 1.62 14 3 Si 0.99 36.06 29.56 68.60 2.03 38.09 14 4 H -0.26 -9.17 7.11 99.48 0.71 -8.46 14 5 H -0.27 -9.35 7.11 99.48 0.71 -8.64 14 6 H -0.25 -8.70 7.11 99.48 0.71 -7.99 14 7 C -0.44 -22.92 9.19 23.54 0.22 -22.70 14 8 H 0.10 4.83 7.85 -2.91 -0.02 4.81 14 9 C 0.25 14.04 6.58 40.17 0.26 14.31 14 10 C -0.40 -19.61 9.81 23.12 0.23 -19.38 14 11 C 0.43 19.33 7.82 133.09 1.04 20.37 14 12 N -0.83 -26.85 9.06 -55.15 -0.50 -27.35 14 13 N -0.65 -32.12 10.40 -192.65 -2.00 -34.12 14 14 C 0.34 17.46 8.06 180.89 1.46 18.92 14 15 Br 0.02 0.67 34.03 -20.37 -0.69 -0.02 14 16 N -0.53 -30.27 7.98 -188.56 -1.51 -31.78 14 17 H 0.29 13.46 8.29 -92.71 -0.77 12.69 14 18 H 0.13 5.43 8.06 -2.91 -0.02 5.41 14 19 H 0.40 11.40 8.95 -92.71 -0.83 10.57 14 20 H 0.42 10.65 8.84 -92.71 -0.82 9.83 14 Total: -1.00 -63.25 212.81 0.91 -62.34 By element: Atomic # 1 Polarization: 18.56 SS G_CDS: -0.34 Total: 18.22 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: 3.67 Total: 13.13 kcal Atomic # 7 Polarization: -128.00 SS G_CDS: -3.76 Total: -131.76 kcal Atomic # 14 Polarization: 36.06 SS G_CDS: 2.03 Total: 38.09 kcal Atomic # 35 Polarization: 0.67 SS G_CDS: -0.69 Total: -0.02 kcal Total: -63.25 0.91 -62.34 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260832944.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.538 kcal (2) G-P(sol) polarization free energy of solvation -63.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds