Wall clock time and date at job start Mon Mar 30 2020 04:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48494 * 109.46971 * 239.99702 * 3 2 1 5 5 H 1.48504 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46718 * 119.99971 * 3 2 1 7 7 C 1.40338 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.39804 * 120.00308 * 0.02562 * 7 2 1 10 10 N 1.32716 * 125.83008 * 180.02562 * 9 7 2 11 11 C 1.33286 * 108.60736 * 180.02562 * 10 9 7 12 12 C 1.35463 * 108.19021 * 359.84184 * 11 10 9 13 13 O 1.34818 * 125.82115 * 0.03406 * 9 7 2 14 14 C 1.50532 * 128.29664 * 180.33062 * 12 11 10 15 15 C 1.52801 * 110.82314 * 341.02283 * 14 12 11 16 16 S 1.81787 * 108.90551 * 52.46402 * 15 14 12 17 17 O 1.42099 * 108.73023 * 179.97438 * 16 15 14 18 18 O 1.42098 * 108.89138 * 48.38015 * 16 15 14 19 19 C 1.51122 * 124.90562 * 179.82870 * 11 10 9 20 20 H 0.96999 * 120.00406 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.20560 * 220.67172 * 14 12 11 22 22 H 1.09002 * 109.20383 * 101.36988 * 14 12 11 23 23 H 1.08998 * 109.56388 * 292.64037 * 15 14 12 24 24 H 1.08998 * 109.66184 * 172.34820 * 15 14 12 25 25 H 1.09003 * 109.62452 * 42.00232 * 19 11 10 26 26 H 1.09001 * 109.61931 * 281.43382 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2124 5 1 1.2752 2.7464 -0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0080 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3090 -2.4261 0.0005 10 7 1.8525 -3.6369 0.0015 11 6 0.8742 -4.5422 0.0006 12 6 -0.3102 -3.8848 0.0026 13 8 -0.0322 -2.5629 -0.0006 14 6 -1.6992 -4.4651 0.0093 15 6 -1.6814 -5.9222 -0.4504 16 16 -0.4600 -6.8367 0.5378 17 8 -0.4470 -8.1910 0.1078 18 8 -0.6680 -6.5435 1.9126 19 6 1.0813 -6.0392 -0.0025 20 1 -0.4851 0.8400 -0.0004 21 1 -2.3334 -3.8852 -0.6612 22 1 -2.1047 -4.4128 1.0197 23 1 -1.4071 -5.9691 -1.5042 24 1 -2.6683 -6.3631 -0.3101 25 1 1.8878 -6.2986 0.6834 26 1 1.3322 -6.3719 -1.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260868087.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:20 Heat of formation + Delta-G solvation = -64.412890 kcal Electronic energy + Delta-G solvation = -15552.728254 eV Core-core repulsion = 12724.937290 eV Total energy + Delta-G solvation = -2827.790964 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.33151 -36.84451 -35.82015 -34.73234 -33.62131 -33.22362 -30.07883 -27.90594 -25.79982 -22.93748 -20.78677 -19.87803 -18.45259 -17.67025 -16.41404 -15.88644 -15.78031 -15.33403 -15.07853 -14.58741 -13.82474 -13.35025 -13.22121 -13.02048 -12.54139 -11.92460 -11.89920 -11.74113 -11.68075 -11.47462 -11.37092 -10.97720 -10.75558 -10.52999 -10.07195 -9.73119 -9.44371 -8.80173 -7.60148 -7.08420 -4.88261 0.24147 2.70357 2.82139 2.94017 2.97727 3.04250 3.72235 3.80817 3.88222 4.06765 4.44994 4.80216 4.89634 5.03634 5.22274 5.43155 5.59663 5.72272 6.01222 6.04603 6.12511 6.54484 6.84797 7.37244 7.65514 7.98172 8.31773 8.44053 9.55708 9.93001 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.061672 B = 0.006517 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.905010 B = 4295.610669 C = 4540.796912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.070 3.930 3 Si 0.935 3.065 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.425 4.425 8 H 0.113 0.887 9 C 0.355 3.645 10 N -0.604 5.604 11 C 0.037 3.963 12 C -0.197 4.197 13 O -0.175 6.175 14 C 0.002 3.998 15 C -0.591 4.591 16 S 2.423 3.577 17 O -0.951 6.951 18 O -0.931 6.931 19 C -0.505 4.505 20 H 0.290 0.710 21 H 0.088 0.912 22 H 0.085 0.915 23 H 0.134 0.866 24 H 0.136 0.864 25 H 0.139 0.861 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 -4.649 -1.895 6.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.154 4.154 3 Si 0.758 3.242 4 H -0.184 1.184 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.459 4.459 8 H 0.131 0.869 9 C 0.172 3.828 10 N -0.337 5.337 11 C -0.090 4.090 12 C -0.254 4.254 13 O -0.068 6.068 14 C -0.036 4.036 15 C -0.720 4.720 16 S 2.605 3.395 17 O -0.948 6.948 18 O -0.929 6.929 19 C -0.635 4.635 20 H 0.101 0.899 21 H 0.106 0.894 22 H 0.103 0.897 23 H 0.152 0.848 24 H 0.155 0.845 25 H 0.157 0.843 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.010 -5.311 -1.273 6.236 hybrid contribution -0.236 1.446 -0.691 1.620 sum -3.245 -3.865 -1.964 5.416 Atomic orbital electron populations 1.69680 1.07693 1.30535 1.31766 1.26161 0.95117 1.02198 0.91926 0.85910 0.79644 0.78261 0.80388 1.18439 1.19947 1.18373 1.18443 0.94982 0.85646 1.46869 0.86871 1.21934 0.76501 0.93309 0.91032 1.70872 1.30704 0.97865 1.34262 1.19758 0.90368 0.92389 1.06492 1.22193 0.94918 0.84109 1.24192 1.84897 1.26597 1.21885 1.73385 1.18909 0.91878 0.89963 1.02849 1.29954 1.17607 1.08933 1.15540 1.07781 0.79307 0.75613 0.76768 1.93567 1.86244 1.31050 1.83923 1.93582 1.84230 1.85637 1.29404 1.28610 1.21155 1.01276 1.12411 0.89925 0.89379 0.89676 0.84806 0.84550 0.84258 0.84703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.42 11.98 55.57 0.67 -18.75 15 2 C 0.07 1.68 5.50 -17.27 -0.10 1.59 15 3 Si 0.94 17.63 29.56 -169.99 -5.03 12.61 15 4 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 5 H -0.27 -4.99 7.11 56.52 0.40 -4.59 15 6 H -0.26 -4.82 7.11 56.52 0.40 -4.42 15 7 C -0.42 -11.21 9.45 -38.21 -0.36 -11.57 15 8 H 0.11 2.82 7.85 -52.49 -0.41 2.41 15 9 C 0.36 9.93 7.66 -16.58 -0.13 9.81 15 10 N -0.60 -16.21 11.35 -9.62 -0.11 -16.32 15 11 C 0.04 0.84 6.83 -82.75 -0.57 0.28 15 12 C -0.20 -4.53 7.06 -35.38 -0.25 -4.78 15 13 O -0.17 -4.77 9.07 2.09 0.02 -4.75 15 14 C 0.00 0.04 5.87 -28.07 -0.16 -0.12 15 15 C -0.59 -7.65 6.38 37.06 0.24 -7.41 15 16 S 2.42 36.65 5.34 -107.50 -0.57 36.07 15 17 O -0.95 -15.51 18.11 -57.80 -1.05 -16.56 15 18 O -0.93 -17.43 17.87 -57.80 -1.03 -18.46 15 19 C -0.50 -8.60 6.75 36.21 0.24 -8.36 15 20 H 0.29 6.51 8.29 -40.82 -0.34 6.17 15 21 H 0.09 1.40 8.14 -51.93 -0.42 0.98 15 22 H 0.08 1.40 8.14 -51.93 -0.42 0.98 15 23 H 0.13 1.47 8.14 -51.93 -0.42 1.05 15 24 H 0.14 1.31 8.14 -51.93 -0.42 0.88 15 25 H 0.14 2.25 8.14 -51.93 -0.42 1.83 15 26 H 0.13 1.91 8.14 -51.93 -0.42 1.49 15 LS Contribution 245.09 15.07 3.69 3.69 Total: -1.00 -34.10 245.09 -6.57 -40.67 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -2.08 Total: 2.37 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: -1.08 Total: -20.57 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.56 Total: -35.08 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.06 Total: -39.77 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.61 kcal Atomic # 16 Polarization: 36.65 SS G_CDS: -0.57 Total: 36.07 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -34.10 -6.57 -40.67 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868087.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.743 kcal (2) G-P(sol) polarization free energy of solvation -34.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds