Wall clock time and date at job start Mon Mar 30 2020 04:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86798 * 119.99909 * 2 1 4 4 H 1.48494 * 109.46971 * 239.99702 * 3 2 1 5 5 H 1.48504 * 109.46873 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46718 * 119.99971 * 3 2 1 7 7 C 1.40338 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99989 * 180.02562 * 7 2 1 9 9 C 1.39804 * 120.00308 * 0.02562 * 7 2 1 10 10 N 1.32716 * 125.83008 * 180.02562 * 9 7 2 11 11 C 1.33286 * 108.60736 * 180.02562 * 10 9 7 12 12 C 1.35463 * 108.19021 * 359.84184 * 11 10 9 13 13 O 1.34818 * 125.82115 * 0.03406 * 9 7 2 14 14 C 1.50532 * 128.29664 * 180.33062 * 12 11 10 15 15 C 1.52801 * 110.82314 * 341.02283 * 14 12 11 16 16 S 1.81787 * 108.90551 * 52.46402 * 15 14 12 17 17 O 1.42099 * 108.73023 * 179.97438 * 16 15 14 18 18 O 1.42098 * 108.89138 * 48.38015 * 16 15 14 19 19 C 1.51122 * 124.90562 * 179.82870 * 11 10 9 20 20 H 0.96999 * 120.00406 * 0.02562 * 1 2 3 21 21 H 1.08999 * 109.20560 * 220.67172 * 14 12 11 22 22 H 1.09002 * 109.20383 * 101.36988 * 14 12 11 23 23 H 1.08998 * 109.56388 * 292.64037 * 15 14 12 24 24 H 1.08998 * 109.66184 * 172.34820 * 15 14 12 25 25 H 1.09003 * 109.62452 * 42.00232 * 19 11 10 26 26 H 1.09001 * 109.61931 * 281.43382 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0940 1.6963 -1.2124 5 1 1.2752 2.7464 -0.0006 6 1 3.0940 1.6963 1.2126 7 6 2.0080 -1.2154 0.0005 8 1 3.0879 -1.2154 0.0010 9 6 1.3090 -2.4261 0.0005 10 7 1.8525 -3.6369 0.0015 11 6 0.8742 -4.5422 0.0006 12 6 -0.3102 -3.8848 0.0026 13 8 -0.0322 -2.5629 -0.0006 14 6 -1.6992 -4.4651 0.0093 15 6 -1.6814 -5.9222 -0.4504 16 16 -0.4600 -6.8367 0.5378 17 8 -0.4470 -8.1910 0.1078 18 8 -0.6680 -6.5435 1.9126 19 6 1.0813 -6.0392 -0.0025 20 1 -0.4851 0.8400 -0.0004 21 1 -2.3334 -3.8852 -0.6612 22 1 -2.1047 -4.4128 1.0197 23 1 -1.4071 -5.9691 -1.5042 24 1 -2.6683 -6.3631 -0.3101 25 1 1.8878 -6.2986 0.6834 26 1 1.3322 -6.3719 -1.0097 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260868087.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:34:19 Heat of formation + Delta-G solvation = -93.614516 kcal Electronic energy + Delta-G solvation = -15553.994531 eV Core-core repulsion = 12724.937290 eV Total energy + Delta-G solvation = -2829.057241 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.21373 -38.16229 -37.14747 -36.33871 -35.43505 -34.89886 -31.68101 -29.63997 -27.34932 -24.46331 -22.65295 -21.58290 -19.92235 -19.33984 -17.77043 -17.36158 -17.18312 -17.03123 -16.69188 -16.20923 -15.31781 -14.90530 -14.64182 -14.46018 -13.84439 -13.42870 -13.32870 -13.24283 -13.11987 -13.07263 -12.94569 -12.61904 -12.14915 -11.98886 -11.55388 -11.42844 -11.22500 -10.71331 -9.44103 -8.90013 -6.82690 -0.98484 0.95662 1.38592 1.46653 1.54784 1.61591 2.07702 2.14897 2.52011 2.64966 3.01584 3.13239 3.41485 3.75247 3.96955 4.12256 4.22731 4.40276 4.56491 4.66032 4.81189 4.91259 4.99168 5.69607 5.77846 6.04281 6.43371 6.48708 7.63658 8.14182 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.061672 B = 0.006517 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.905010 B = 4295.610669 C = 4540.796912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.030 3.970 3 Si 1.015 2.985 4 H -0.252 1.252 5 H -0.259 1.259 6 H -0.255 1.255 7 C -0.458 4.458 8 H 0.114 0.886 9 C 0.318 3.682 10 N -0.638 5.638 11 C 0.017 3.983 12 C -0.209 4.209 13 O -0.202 6.202 14 C -0.003 4.003 15 C -0.569 4.569 16 S 2.452 3.548 17 O -0.957 6.957 18 O -0.970 6.970 19 C -0.516 4.516 20 H 0.301 0.699 21 H 0.104 0.896 22 H 0.091 0.909 23 H 0.162 0.838 24 H 0.184 0.816 25 H 0.140 0.860 26 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.366 -4.769 -2.675 6.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.191 4.191 3 Si 0.833 3.167 4 H -0.176 1.176 5 H -0.183 1.183 6 H -0.179 1.179 7 C -0.493 4.493 8 H 0.132 0.868 9 C 0.135 3.865 10 N -0.373 5.373 11 C -0.108 4.108 12 C -0.265 4.265 13 O -0.096 6.096 14 C -0.041 4.041 15 C -0.701 4.701 16 S 2.636 3.364 17 O -0.954 6.954 18 O -0.967 6.967 19 C -0.643 4.643 20 H 0.112 0.888 21 H 0.123 0.877 22 H 0.109 0.891 23 H 0.180 0.820 24 H 0.202 0.798 25 H 0.158 0.842 26 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.031 -5.480 -2.042 7.103 hybrid contribution 0.014 1.405 -0.467 1.481 sum -4.017 -4.075 -2.509 6.248 Atomic orbital electron populations 1.69727 1.09365 1.32273 1.31701 1.27218 0.95940 1.05437 0.90471 0.84754 0.78300 0.73055 0.80625 1.17624 1.18326 1.17872 1.18860 0.95413 0.86696 1.48310 0.86796 1.22481 0.77205 0.94350 0.92505 1.70838 1.32371 0.98498 1.35584 1.20503 0.89774 0.94686 1.05810 1.23364 0.97716 0.82830 1.22594 1.84848 1.26457 1.24390 1.73855 1.19181 0.88558 0.92390 1.03982 1.29865 1.18802 1.05261 1.16171 1.06942 0.78537 0.75050 0.75890 1.93556 1.86221 1.31698 1.83928 1.93533 1.84551 1.86173 1.32446 1.28878 1.23461 0.97511 1.14426 0.88814 0.87743 0.89086 0.81977 0.79827 0.84191 0.81930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -41.12 11.98 21.89 0.26 -40.86 15 2 C 0.03 1.44 5.50 85.38 0.47 1.91 15 3 Si 1.02 35.79 29.56 68.60 2.03 37.81 15 4 H -0.25 -8.52 7.11 99.48 0.71 -7.82 15 5 H -0.26 -8.42 7.11 99.48 0.71 -7.71 15 6 H -0.25 -8.72 7.11 99.48 0.71 -8.01 15 7 C -0.46 -25.08 9.45 23.16 0.22 -24.86 15 8 H 0.11 5.93 7.85 -2.91 -0.02 5.90 15 9 C 0.32 18.50 7.66 84.94 0.65 19.15 15 10 N -0.64 -35.50 11.35 -297.45 -3.38 -38.88 15 11 C 0.02 0.81 6.83 41.83 0.29 1.09 15 12 C -0.21 -9.65 7.06 24.99 0.18 -9.48 15 13 O -0.20 -11.36 9.07 -15.43 -0.14 -11.50 15 14 C 0.00 -0.09 5.87 29.73 0.17 0.08 15 15 C -0.57 -12.37 6.38 71.92 0.46 -11.92 15 16 S 2.45 68.67 5.34 -56.49 -0.30 68.37 15 17 O -0.96 -28.48 18.11 -127.40 -2.31 -30.79 15 18 O -0.97 -35.25 17.87 -127.40 -2.28 -37.52 15 19 C -0.52 -17.15 6.75 71.37 0.48 -16.66 15 20 H 0.30 13.52 8.29 -92.71 -0.77 12.75 15 21 H 0.10 3.04 8.14 -2.39 -0.02 3.02 15 22 H 0.09 2.82 8.14 -2.39 -0.02 2.80 15 23 H 0.16 2.76 8.14 -2.39 -0.02 2.74 15 24 H 0.18 2.41 8.14 -2.39 -0.02 2.39 15 25 H 0.14 4.55 8.14 -2.39 -0.02 4.53 15 26 H 0.16 4.35 8.14 -2.39 -0.02 4.33 15 Total: -1.00 -77.13 245.09 -1.98 -79.12 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.21 Total: 14.92 kcal Atomic # 6 Polarization: -43.59 SS G_CDS: 2.92 Total: -40.68 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -3.11 Total: -79.73 kcal Atomic # 8 Polarization: -75.09 SS G_CDS: -4.72 Total: -79.81 kcal Atomic # 14 Polarization: 35.79 SS G_CDS: 2.03 Total: 37.81 kcal Atomic # 16 Polarization: 68.67 SS G_CDS: -0.30 Total: 68.37 kcal Total: -77.13 -1.98 -79.12 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260868087.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.498 kcal (2) G-P(sol) polarization free energy of solvation -77.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds