Wall clock time and date at job start Mon Mar 30 2020 04:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99794 * 2 1 4 4 C 1.50695 * 109.47086 * 180.02562 * 3 2 1 5 5 N 1.28535 * 124.27096 * 89.99541 * 4 3 2 6 6 C 1.32730 * 117.53577 * 179.72244 * 5 4 3 7 7 C 1.40470 * 123.58430 * 180.31214 * 6 5 4 8 8 H 1.07999 * 120.00157 * 180.22471 * 7 6 5 9 9 C 1.40345 * 119.99704 * 0.23203 * 7 6 5 10 10 N 1.30601 * 120.00692 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 119.99538 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47165 * 90.00134 * 11 9 7 13 13 H 1.48507 * 109.46923 * 209.99684 * 11 9 7 14 14 H 1.48492 * 109.47342 * 330.00042 * 11 9 7 15 15 C 1.39969 * 112.82952 * 0.52258 * 6 5 4 16 16 C 1.46246 * 126.28649 * 179.79459 * 15 6 5 17 17 O 1.21655 * 119.99470 * 359.70879 * 16 15 6 18 18 O 1.34974 * 120.00320 * 179.71140 * 16 15 6 19 19 S 1.70774 * 124.25834 * 270.01703 * 4 3 2 20 20 H 1.09005 * 109.47360 * 300.00089 * 1 2 3 21 21 H 1.09002 * 109.47569 * 60.00581 * 1 2 3 22 22 H 1.09002 * 109.47219 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47451 * 59.99511 * 3 2 1 24 24 H 1.09011 * 109.46491 * 299.99700 * 3 2 1 25 25 H 0.96995 * 120.00383 * 179.97438 * 10 9 7 26 26 H 0.96692 * 114.00149 * 179.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 -0.0006 5 7 4.2335 1.1296 -1.0631 6 6 5.5480 1.0312 -0.9080 7 6 6.4542 0.9666 -1.9794 8 1 7.5135 0.8835 -1.7865 9 6 5.9829 1.0103 -3.3006 10 7 4.7018 1.1105 -3.5341 11 14 7.1880 0.9252 -4.7254 12 1 7.3996 -0.4933 -5.1107 13 1 6.6394 1.6761 -5.8833 14 1 8.4829 1.5251 -4.3150 15 6 5.9349 0.9939 0.4366 16 6 7.3034 0.8851 0.9408 17 8 8.2346 0.8117 0.1614 18 8 7.5332 0.8659 2.2707 19 16 4.4713 1.1100 1.4104 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6885 1.8465 0.8899 24 1 1.6884 1.8464 -0.8901 25 1 4.3761 1.1411 -4.4472 26 1 8.4677 0.7913 2.5073 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261147689.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:35:21 Heat of formation + Delta-G solvation = -128.346279 kcal Electronic energy + Delta-G solvation = -15072.210578 eV Core-core repulsion = 12241.647255 eV Total energy + Delta-G solvation = -2830.563324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.040 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.71463 -39.87837 -38.60747 -36.57315 -35.63822 -32.35165 -29.26848 -28.65033 -26.82116 -24.20336 -23.13433 -20.64143 -20.03019 -18.75476 -17.56582 -17.42728 -17.03675 -16.90069 -16.21232 -16.14783 -15.88654 -15.01222 -14.55556 -14.09261 -13.69029 -13.65719 -13.09434 -13.02913 -12.84978 -12.33811 -12.25525 -12.20692 -11.72544 -11.39249 -11.07678 -10.66713 -10.08635 -9.91545 -9.63903 -8.84830 -6.77712 -0.22437 0.96135 1.31738 1.33532 1.47277 1.54588 1.82911 2.12219 2.25639 2.74191 2.91990 3.31018 3.65216 4.10293 4.45142 4.57928 4.62700 4.73151 4.87459 4.87855 5.11920 5.34409 5.76574 6.05912 6.15756 6.18224 6.50708 7.39200 7.43448 7.99823 Molecular weight = 243.04amu Principal moments of inertia in cm(-1) A = 0.017078 B = 0.010996 C = 0.006864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.159985 B = 2545.760246 C = 4078.051600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.413 6.413 3 C 0.148 3.852 4 C 0.072 3.928 5 N -0.447 5.447 6 C 0.233 3.767 7 C -0.372 4.372 8 H 0.110 0.890 9 C 0.017 3.983 10 N -0.723 5.723 11 Si 1.001 2.999 12 H -0.255 1.255 13 H -0.248 1.248 14 H -0.260 1.260 15 C -0.505 4.505 16 C 0.548 3.452 17 O -0.582 6.582 18 O -0.514 6.514 19 S 0.059 5.941 20 H 0.064 0.936 21 H 0.051 0.949 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.300 0.700 26 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.505 0.899 2.531 7.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.068 3.932 4 C -0.213 4.213 5 N -0.164 5.164 6 C 0.112 3.888 7 C -0.402 4.402 8 H 0.128 0.872 9 C -0.210 4.210 10 N -0.342 5.342 11 Si 0.818 3.182 12 H -0.179 1.179 13 H -0.172 1.172 14 H -0.184 1.184 15 C -0.624 4.624 16 C 0.403 3.597 17 O -0.481 6.481 18 O -0.326 6.326 19 S 0.306 5.694 20 H 0.082 0.918 21 H 0.070 0.930 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.112 0.888 26 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -7.281 0.800 2.640 7.786 hybrid contribution 1.509 0.015 -0.956 1.787 sum -5.772 0.815 1.684 6.067 Atomic orbital electron populations 1.23009 0.78285 1.04168 1.01489 1.87936 1.22424 1.27092 1.95710 1.20917 0.83381 0.85771 1.03114 1.27296 1.01345 1.00377 0.92299 1.66643 1.05249 1.14776 1.29742 1.18257 0.87933 0.91594 0.91052 1.20437 0.96251 1.33501 0.90035 0.87195 1.27435 0.98201 0.92196 1.03208 1.69947 1.15995 1.23390 1.24894 0.84929 0.77904 0.80259 0.75111 1.17937 1.17164 1.18368 1.23505 0.93691 1.49869 0.95377 1.18992 0.87734 0.73253 0.79772 1.90700 1.45603 1.53854 1.57966 1.84999 1.35611 1.87277 1.24681 1.82449 0.98005 1.77622 1.11300 0.91765 0.93012 0.88323 0.88322 0.90312 0.88832 0.72962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 15 2 O -0.41 -14.48 10.69 -148.98 -1.59 -16.07 15 3 C 0.15 5.16 6.49 71.23 0.46 5.63 15 4 C 0.07 3.33 6.93 88.59 0.61 3.95 15 5 N -0.45 -24.26 8.39 -183.72 -1.54 -25.80 15 6 C 0.23 13.45 6.53 39.97 0.26 13.71 15 7 C -0.37 -21.06 8.87 23.33 0.21 -20.85 15 8 H 0.11 6.41 5.62 -2.91 -0.02 6.39 15 9 C 0.02 0.82 5.50 85.39 0.47 1.29 15 10 N -0.72 -36.40 11.73 21.89 0.26 -36.14 15 11 Si 1.00 37.34 29.56 68.60 2.03 39.37 15 12 H -0.26 -9.17 7.11 99.48 0.71 -8.46 15 13 H -0.25 -8.26 7.11 99.48 0.71 -7.55 15 14 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 15 C -0.51 -27.43 6.61 24.77 0.16 -27.27 15 16 C 0.55 28.12 8.26 69.90 0.58 28.70 15 17 O -0.58 -32.11 15.18 19.33 0.29 -31.82 15 18 O -0.51 -20.93 13.45 -58.92 -0.79 -21.72 15 19 S 0.06 2.65 22.99 -56.49 -1.30 1.36 15 20 H 0.06 1.12 8.14 -2.38 -0.02 1.11 15 21 H 0.05 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.10 1.91 8.14 -2.39 -0.02 1.89 15 23 H 0.10 2.68 8.14 -2.39 -0.02 2.66 15 24 H 0.08 2.65 8.14 -2.38 -0.02 2.63 15 25 H 0.30 13.13 8.29 -92.71 -0.77 12.36 15 26 H 0.41 12.10 8.98 -74.06 -0.67 11.43 15 Total: -1.00 -71.48 257.12 1.93 -69.55 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.57 Total: 14.28 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 4.00 Total: 7.00 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -1.28 Total: -61.95 kcal Atomic # 8 Polarization: -67.52 SS G_CDS: -2.09 Total: -69.61 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 2.03 Total: 39.37 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -1.30 Total: 1.36 kcal Total: -71.48 1.93 -69.55 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261147689.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.797 kcal (2) G-P(sol) polarization free energy of solvation -71.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds