Wall clock time and date at job start Mon Mar 30 2020 04:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31544 * 1 3 3 Si 1.86800 * 120.00320 * 2 1 4 4 H 1.48498 * 109.47118 * 270.00433 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00091 * 3 2 1 6 6 H 1.48499 * 109.47134 * 149.99913 * 3 2 1 7 7 C 1.38834 * 119.99909 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99622 * 0.02562 * 7 2 1 9 9 N 1.36979 * 119.99978 * 180.02562 * 7 2 1 10 10 C 1.38466 * 119.99624 * 180.27520 * 9 7 2 11 11 N 1.32526 * 119.20384 * 359.45563 * 10 9 7 12 12 C 1.32235 * 120.74825 * 179.71631 * 11 10 9 13 13 C 1.38736 * 119.18164 * 0.54383 * 12 11 10 14 14 Br 1.89111 * 120.72935 * 179.70565 * 13 12 11 15 15 C 1.38740 * 118.54009 * 359.73018 * 13 12 11 16 16 N 1.32237 * 119.18034 * 359.97438 * 15 13 12 17 17 H 0.97004 * 119.99310 * 359.97438 * 1 2 3 18 18 H 0.97001 * 119.99879 * 359.97438 * 9 7 2 19 19 H 1.08004 * 120.40412 * 180.25124 * 12 11 10 20 20 H 1.07999 * 120.40957 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3154 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4470 2.6527 0.7001 6 1 3.5471 1.4401 0.7000 7 6 2.0096 -1.2023 -0.0005 8 1 1.4695 -2.1376 -0.0014 9 7 3.3794 -1.2024 0.0000 10 6 4.0716 -2.4016 -0.0063 11 7 3.3931 -3.5399 -0.0018 12 6 4.0230 -4.7025 -0.0132 13 6 5.4102 -4.7202 -0.0186 14 35 6.3557 -6.3580 -0.0265 15 6 6.0886 -3.5100 -0.0174 16 7 5.3967 -2.3831 -0.0118 17 1 -0.4849 0.8401 0.0004 18 1 3.8644 -0.3623 0.0004 19 1 3.4644 -5.6269 -0.0136 20 1 7.1684 -3.4885 -0.0210 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302264354.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:54 Heat of formation + Delta-G solvation = 59.099635 kcal Electronic energy + Delta-G solvation = -10018.122253 eV Core-core repulsion = 7875.675459 eV Total energy + Delta-G solvation = -2142.446794 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.970 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.91762 -35.77309 -32.80051 -32.58089 -31.23444 -28.32602 -24.97775 -23.77563 -21.74867 -18.84074 -17.36853 -16.32417 -14.96479 -14.62338 -14.30247 -13.70272 -13.29685 -12.78619 -12.41121 -11.82749 -11.14237 -10.84952 -10.41867 -10.14719 -10.08648 -10.03631 -9.97405 -9.01924 -8.18901 -7.61521 -6.74749 -4.03498 1.73726 2.04385 2.32993 2.90752 2.92136 2.97052 3.78856 4.05198 4.43412 5.02726 5.03132 5.27649 5.74527 5.87315 6.37471 6.86493 7.17902 7.62995 7.99270 8.25024 8.56885 8.94063 9.39023 10.34022 Molecular weight = 242.97amu Principal moments of inertia in cm(-1) A = 0.090157 B = 0.005934 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 310.493526 B = 4717.583990 C = 5018.225710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.044 3.956 3 Si 0.880 3.120 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.285 4.285 8 H 0.137 0.863 9 N -0.511 5.511 10 C 0.489 3.511 11 N -0.553 5.553 12 C 0.232 3.768 13 C -0.336 4.336 14 Br -0.075 7.075 15 C 0.231 3.769 16 N -0.593 5.593 17 H 0.283 0.717 18 H 0.393 0.607 19 H 0.155 0.845 20 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.523 -7.782 -0.068 13.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.164 4.164 3 Si 0.705 3.295 4 H -0.189 1.189 5 H -0.193 1.193 6 H -0.188 1.188 7 C -0.416 4.416 8 H 0.154 0.846 9 N -0.121 5.121 10 C 0.136 3.864 11 N -0.277 5.277 12 C 0.055 3.945 13 C -0.429 4.429 14 Br 0.006 6.994 15 C 0.056 3.944 16 N -0.319 5.319 17 H 0.094 0.906 18 H 0.229 0.771 19 H 0.172 0.828 20 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 9.709 -7.009 -0.055 11.975 hybrid contribution 0.747 0.745 0.009 1.055 sum 10.456 -6.264 -0.046 12.189 Atomic orbital electron populations 1.69663 1.05713 1.28745 1.44118 1.25152 0.95752 0.98701 0.96779 0.86592 0.80131 0.83037 0.79716 1.18864 1.19314 1.18812 1.19796 0.78214 0.97626 1.45966 0.84599 1.40919 1.06759 1.03087 1.61300 1.18866 0.84534 0.86555 0.96422 1.68018 1.39308 0.97029 1.23387 1.22635 0.89413 0.95733 0.86750 1.22443 0.96608 0.92004 1.31857 1.96442 1.75646 1.28577 1.98695 1.22403 0.99047 0.85677 0.87308 1.67804 1.07327 1.30559 1.26186 0.90648 0.77056 0.82814 0.82896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.69 13.96 55.49 0.77 -21.92 14 2 C 0.04 1.13 5.50 -17.45 -0.10 1.03 14 3 Si 0.88 18.43 27.73 -169.99 -4.71 13.71 14 4 H -0.26 -5.44 7.11 56.52 0.40 -5.04 14 5 H -0.27 -5.53 7.11 56.52 0.40 -5.13 14 6 H -0.26 -5.28 6.52 56.52 0.37 -4.91 14 7 C -0.29 -7.48 10.17 -15.03 -0.15 -7.63 14 8 H 0.14 3.91 7.28 -52.49 -0.38 3.53 14 9 N -0.51 -12.27 5.23 -12.78 -0.07 -12.34 14 10 C 0.49 11.45 8.38 -322.64 -2.70 8.74 14 11 N -0.55 -12.68 9.10 -13.88 -0.13 -12.81 14 12 C 0.23 4.40 11.08 -17.19 -0.19 4.21 14 13 C -0.34 -5.85 6.27 -39.21 -0.25 -6.10 14 14 Br -0.08 -1.06 33.76 -68.01 -2.30 -3.36 14 15 C 0.23 4.17 11.08 -17.19 -0.19 3.97 14 16 N -0.59 -12.59 10.46 -13.88 -0.15 -12.73 14 17 H 0.28 6.93 8.31 -40.82 -0.34 6.59 14 18 H 0.39 8.78 5.87 -40.82 -0.24 8.54 14 19 H 0.15 2.46 8.06 -52.48 -0.42 2.04 14 20 H 0.15 2.23 8.06 -52.49 -0.42 1.81 14 LS Contribution 211.04 15.07 3.18 3.18 Total: -1.00 -26.99 211.04 -7.61 -34.59 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -0.63 Total: 7.43 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.58 Total: 4.23 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: 0.44 Total: -59.80 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -4.71 Total: 13.71 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -2.30 Total: -3.36 kcal Total LS contribution 3.18 Total: 3.18 kcal Total: -26.99 -7.61 -34.59 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302264354.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.694 kcal (2) G-P(sol) polarization free energy of solvation -26.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds