Wall clock time and date at job start Mon Mar 30 2020 04:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86805 * 119.99702 * 2 1 4 4 H 1.48500 * 109.46918 * 270.00030 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00260 * 3 2 1 6 6 H 1.48491 * 109.46874 * 150.00553 * 3 2 1 7 7 C 1.39988 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.41182 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.40751 * 119.74256 * 180.02562 * 9 7 2 11 11 C 1.36955 * 119.18130 * 179.70117 * 10 9 7 12 12 Br 1.89098 * 120.67660 * 180.30023 * 11 10 9 13 13 C 1.39699 * 118.64907 * 0.27765 * 11 10 9 14 14 O 1.35691 * 120.28978 * 179.97438 * 13 11 10 15 15 C 1.39456 * 119.41832 * 0.02562 * 13 11 10 16 16 N 1.31366 * 120.78128 * 359.97438 * 15 13 11 17 17 H 0.97003 * 120.00199 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.41337 * 359.97438 * 10 9 7 19 19 H 0.96698 * 114.00169 * 90.00017 * 14 13 11 20 20 H 1.08004 * 119.61063 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0465 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5393 1.4402 0.6999 7 6 2.0077 -1.2123 -0.0005 8 1 3.0878 -1.2123 -0.0010 9 6 1.3019 -2.4350 -0.0005 10 6 2.0112 -3.6508 -0.0005 11 6 1.3149 -4.8301 0.0057 12 35 2.2249 -6.4877 0.0145 13 6 -0.0813 -4.7836 0.0059 14 8 -0.8044 -5.9318 0.0115 15 6 -0.7255 -3.5467 -0.0007 16 7 -0.0350 -2.4291 -0.0066 17 1 -0.4850 0.8401 -0.0004 18 1 3.0912 -3.6537 -0.0010 19 1 -1.0137 -6.2605 0.8965 20 1 -1.8048 -3.5071 -0.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306311768.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:11 Heat of formation + Delta-G solvation = -13.299016 kcal Electronic energy + Delta-G solvation = -10176.646916 eV Core-core repulsion = 7998.767929 eV Total energy + Delta-G solvation = -2177.878987 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.70486 -36.10135 -33.57125 -31.77742 -29.74723 -28.48096 -25.47365 -21.99206 -21.36026 -17.64720 -17.26483 -15.86572 -14.85612 -14.47352 -14.17299 -12.87304 -12.45151 -12.21361 -11.77480 -11.34028 -11.23237 -10.76807 -10.49215 -10.39068 -10.20303 -9.47036 -9.43158 -8.21538 -7.79985 -7.68694 -6.64409 -4.73313 2.37083 2.48459 2.54359 2.98793 3.00773 3.03365 3.79544 4.46274 5.26820 5.60303 5.87554 6.34614 6.46703 6.83331 6.95567 7.03351 7.16697 7.50903 7.95057 8.31893 8.50878 8.72480 9.80235 10.06971 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.050990 B = 0.007975 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.996502 B = 3510.225587 C = 4046.787133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.705 5.705 2 C 0.064 3.936 3 Si 0.914 3.086 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.412 4.412 8 H 0.090 0.910 9 C 0.249 3.751 10 C -0.234 4.234 11 C -0.027 4.027 12 Br -0.090 7.090 13 C -0.100 4.100 14 O -0.486 6.486 15 C 0.128 3.872 16 N -0.467 5.467 17 H 0.278 0.722 18 H 0.113 0.887 19 H 0.353 0.647 20 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.324 -5.382 1.543 6.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.163 4.163 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.442 4.442 8 H 0.108 0.892 9 C 0.124 3.876 10 C -0.260 4.260 11 C -0.111 4.111 12 Br -0.006 7.006 13 C -0.152 4.152 14 O -0.291 6.291 15 C -0.040 4.040 16 N -0.181 5.181 17 H 0.089 0.911 18 H 0.131 0.869 19 H 0.205 0.795 20 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.117 -4.982 0.912 5.489 hybrid contribution 0.559 0.116 0.532 0.780 sum 2.676 -4.866 1.444 5.738 Atomic orbital electron populations 1.70125 1.07333 1.28478 1.26627 1.26146 0.95039 1.01476 0.93616 0.86209 0.80425 0.80151 0.79487 1.19150 1.19874 1.18312 1.19686 0.94670 0.89176 1.40674 0.89217 1.18622 0.88251 0.91459 0.89250 1.21503 0.99485 0.91418 1.13560 1.21966 0.93634 0.90006 1.05531 1.96454 1.77147 1.29120 1.97860 1.18857 0.87843 0.86777 1.21693 1.84881 1.73447 1.39550 1.31217 1.23057 0.99501 0.87167 0.94282 1.68835 1.07180 1.25377 1.16733 0.91088 0.86891 0.79516 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -17.84 11.45 55.55 0.64 -17.20 14 2 C 0.06 1.54 5.50 -17.34 -0.10 1.45 14 3 Si 0.91 17.54 29.56 -169.99 -5.02 12.51 14 4 H -0.27 -5.07 7.11 56.52 0.40 -4.67 14 5 H -0.27 -5.14 7.11 56.52 0.40 -4.74 14 6 H -0.26 -4.88 7.11 56.52 0.40 -4.48 14 7 C -0.41 -10.44 9.13 -37.81 -0.35 -10.78 14 8 H 0.09 2.10 7.85 -52.48 -0.41 1.69 14 9 C 0.25 6.55 6.55 -84.99 -0.56 5.99 14 10 C -0.23 -5.64 9.54 -39.10 -0.37 -6.01 14 11 C -0.03 -0.61 6.24 -39.50 -0.25 -0.86 14 12 Br -0.09 -1.71 33.27 -68.01 -2.26 -3.97 14 13 C -0.10 -2.29 6.76 -38.58 -0.26 -2.55 14 14 O -0.49 -9.73 12.93 -18.78 -0.24 -9.97 14 15 C 0.13 3.06 11.15 -17.30 -0.19 2.87 14 16 N -0.47 -12.44 7.85 -10.97 -0.09 -12.53 14 17 H 0.28 6.31 8.30 -40.82 -0.34 5.97 14 18 H 0.11 2.53 8.06 -52.49 -0.42 2.11 14 19 H 0.35 5.57 9.06 45.56 0.41 5.98 14 20 H 0.13 2.82 8.06 -52.48 -0.42 2.40 14 LS Contribution 212.56 15.07 3.20 3.20 Total: -1.00 -27.77 212.56 -5.83 -33.59 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 0.02 Total: 4.25 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -2.07 Total: -9.88 kcal Atomic # 7 Polarization: -30.28 SS G_CDS: 0.55 Total: -29.73 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: -0.24 Total: -9.97 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.51 kcal Atomic # 35 Polarization: -1.71 SS G_CDS: -2.26 Total: -3.97 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -27.77 -5.83 -33.59 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311768.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.295 kcal (2) G-P(sol) polarization free energy of solvation -27.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds