Wall clock time and date at job start Mon Mar 30 2020 04:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30780 * 1 3 3 Si 1.86805 * 119.99702 * 2 1 4 4 H 1.48500 * 109.46918 * 270.00030 * 3 2 1 5 5 H 1.48492 * 109.47230 * 30.00260 * 3 2 1 6 6 H 1.48491 * 109.46874 * 150.00553 * 3 2 1 7 7 C 1.39988 * 120.00006 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99951 * 179.97438 * 7 2 1 9 9 C 1.41182 * 120.00260 * 359.97438 * 7 2 1 10 10 C 1.40751 * 119.74256 * 180.02562 * 9 7 2 11 11 C 1.36955 * 119.18130 * 179.70117 * 10 9 7 12 12 Br 1.89098 * 120.67660 * 180.30023 * 11 10 9 13 13 C 1.39699 * 118.64907 * 0.27765 * 11 10 9 14 14 O 1.35691 * 120.28978 * 179.97438 * 13 11 10 15 15 C 1.39456 * 119.41832 * 0.02562 * 13 11 10 16 16 N 1.31366 * 120.78128 * 359.97438 * 15 13 11 17 17 H 0.97003 * 120.00199 * 0.02562 * 1 2 3 18 18 H 1.08002 * 120.41337 * 359.97438 * 10 9 7 19 19 H 0.96698 * 114.00169 * 90.00017 * 14 13 11 20 20 H 1.08004 * 119.61063 * 179.97438 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2417 1.6178 0.0000 4 1 2.4892 2.0465 -1.4001 5 1 1.4392 2.6527 0.7000 6 1 3.5393 1.4402 0.6999 7 6 2.0077 -1.2123 -0.0005 8 1 3.0878 -1.2123 -0.0010 9 6 1.3019 -2.4350 -0.0005 10 6 2.0112 -3.6508 -0.0005 11 6 1.3149 -4.8301 0.0057 12 35 2.2249 -6.4877 0.0145 13 6 -0.0813 -4.7836 0.0059 14 8 -0.8044 -5.9318 0.0115 15 6 -0.7255 -3.5467 -0.0007 16 7 -0.0350 -2.4291 -0.0066 17 1 -0.4850 0.8401 -0.0004 18 1 3.0912 -3.6537 -0.0010 19 1 -1.0137 -6.2605 0.8965 20 1 -1.8048 -3.5071 -0.0010 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306311768.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:11 Heat of formation + Delta-G solvation = -32.125523 kcal Electronic energy + Delta-G solvation = -10177.463294 eV Core-core repulsion = 7998.767929 eV Total energy + Delta-G solvation = -2178.695365 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.51170 -37.81884 -35.36055 -33.55416 -31.56758 -30.22894 -27.30994 -23.82335 -23.18444 -19.46545 -18.97146 -17.65917 -16.67155 -16.14111 -15.87286 -14.61775 -14.20349 -13.97422 -13.54323 -12.91004 -12.88035 -12.56035 -12.16805 -12.02760 -11.83961 -11.16971 -11.09640 -9.99928 -9.63911 -9.51797 -8.42528 -6.61284 0.58584 0.70048 0.74844 1.42811 1.51015 1.57520 2.20408 2.67782 3.56209 3.73920 4.10200 4.54575 4.65109 5.02791 5.18277 5.22970 5.35308 5.72521 6.10672 6.50651 6.72914 7.08080 7.95102 8.32662 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.050990 B = 0.007975 C = 0.006917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.996502 B = 3510.225587 C = 4046.787133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.022 3.978 3 Si 0.992 3.008 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.252 1.252 7 C -0.443 4.443 8 H 0.099 0.901 9 C 0.218 3.782 10 C -0.245 4.245 11 C -0.040 4.040 12 Br -0.050 7.050 13 C -0.090 4.090 14 O -0.486 6.486 15 C 0.111 3.889 16 N -0.498 5.498 17 H 0.285 0.715 18 H 0.123 0.877 19 H 0.379 0.621 20 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.914 -5.632 1.674 6.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.366 5.366 2 C -0.202 4.202 3 Si 0.812 3.188 4 H -0.187 1.187 5 H -0.191 1.191 6 H -0.176 1.176 7 C -0.474 4.474 8 H 0.117 0.883 9 C 0.094 3.906 10 C -0.270 4.270 11 C -0.126 4.126 12 Br 0.034 6.966 13 C -0.141 4.141 14 O -0.294 6.294 15 C -0.056 4.056 16 N -0.213 5.213 17 H 0.096 0.904 18 H 0.141 0.859 19 H 0.233 0.767 20 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.695 -5.274 1.057 6.016 hybrid contribution 0.327 -0.027 0.500 0.598 sum 3.022 -5.301 1.557 6.298 Atomic orbital electron populations 1.70203 1.09021 1.29880 1.27483 1.27079 0.95799 1.04815 0.92479 0.85043 0.79032 0.75148 0.79587 1.18689 1.19114 1.17582 1.20084 0.95369 0.89969 1.41940 0.88301 1.19047 0.88674 0.92825 0.90094 1.21591 0.99981 0.91440 1.13967 1.22189 0.94113 0.91592 1.04666 1.96461 1.76364 1.25992 1.97737 1.18856 0.88148 0.87194 1.19947 1.84792 1.72942 1.38327 1.33301 1.23398 1.00410 0.87358 0.94417 1.68796 1.07734 1.26833 1.17912 0.90419 0.85938 0.76685 0.83243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -38.19 11.45 21.83 0.25 -37.94 14 2 C 0.02 1.04 5.50 85.27 0.47 1.51 14 3 Si 0.99 35.65 29.56 68.60 2.03 37.67 14 4 H -0.26 -9.16 7.11 99.48 0.71 -8.45 14 5 H -0.27 -9.16 7.11 99.48 0.71 -8.45 14 6 H -0.25 -8.68 7.11 99.48 0.71 -7.97 14 7 C -0.44 -22.74 9.13 23.42 0.21 -22.52 14 8 H 0.10 4.66 7.85 -2.91 -0.02 4.63 14 9 C 0.22 11.66 6.55 40.20 0.26 11.92 14 10 C -0.24 -11.74 9.54 22.58 0.22 -11.53 14 11 C -0.04 -1.79 6.24 22.32 0.14 -1.65 14 12 Br -0.05 -1.79 33.27 -20.37 -0.68 -2.47 14 13 C -0.09 -3.99 6.76 22.92 0.15 -3.83 14 14 O -0.49 -18.30 12.93 -90.10 -1.17 -19.47 14 15 C 0.11 5.31 11.15 85.06 0.95 6.25 14 16 N -0.50 -26.93 7.85 -188.62 -1.48 -28.41 14 17 H 0.28 13.08 8.30 -92.71 -0.77 12.31 14 18 H 0.12 5.45 8.06 -2.91 -0.02 5.43 14 19 H 0.38 10.81 9.06 -74.06 -0.67 10.14 14 20 H 0.15 6.33 8.06 -2.91 -0.02 6.31 14 Total: -1.00 -58.51 212.56 1.97 -56.54 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: 0.61 Total: 13.94 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: 2.40 Total: -19.86 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: -1.23 Total: -66.35 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: -1.17 Total: -19.47 kcal Atomic # 14 Polarization: 35.65 SS G_CDS: 2.03 Total: 37.67 kcal Atomic # 35 Polarization: -1.79 SS G_CDS: -0.68 Total: -2.47 kcal Total: -58.51 1.97 -56.54 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306311768.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.418 kcal (2) G-P(sol) polarization free energy of solvation -58.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds