Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48492 * 109.47715 * 84.71023 * 3 2 1 5 5 H 1.48505 * 109.46923 * 204.71268 * 3 2 1 6 6 H 1.48502 * 109.46746 * 324.70583 * 3 2 1 7 7 C 1.39943 * 119.99929 * 179.71644 * 2 1 3 8 8 H 1.07997 * 119.99550 * 23.28538 * 7 2 1 9 9 C 1.41155 * 119.99776 * 203.27541 * 7 2 1 10 10 C 1.41738 * 120.72199 * 40.46397 * 9 7 2 11 11 O 1.35531 * 120.96530 * 359.97438 * 10 9 7 12 12 C 1.38840 * 118.06706 * 179.97438 * 10 9 7 13 13 C 1.38198 * 119.37846 * 0.02562 * 12 10 9 14 14 N 1.32192 * 121.43518 * 359.97438 * 13 12 10 15 15 C 1.31597 * 122.14151 * 359.70312 * 14 13 12 16 16 Br 1.89101 * 119.79412 * 180.29418 * 15 14 13 17 17 H 0.96996 * 119.99979 * 0.02562 * 1 2 3 18 18 H 0.96698 * 114.00082 * 90.00348 * 11 10 9 19 19 H 1.08003 * 120.31225 * 180.02562 * 12 10 9 20 20 H 1.08003 * 119.28359 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3785 2.1111 1.3940 5 1 3.5917 1.4105 -0.5854 6 1 1.5005 2.6177 -0.8090 7 6 2.0084 -1.2119 0.0060 8 1 1.5343 -2.1109 -0.3593 9 6 3.3338 -1.2592 0.4893 10 6 3.7104 -0.5271 1.6430 11 8 2.8100 0.2356 2.3096 12 6 5.0285 -0.6139 2.0704 13 6 5.9193 -1.4011 1.3655 14 7 5.5440 -2.0748 0.2919 15 6 4.3087 -2.0395 -0.1605 16 35 3.8424 -3.0364 -1.6982 17 1 -0.4850 0.8400 -0.0004 18 1 2.3385 -0.2348 3.0107 19 1 5.3547 -0.0715 2.9455 20 1 6.9442 -1.4678 1.6996 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306324835.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = -16.110148 kcal Electronic energy + Delta-G solvation = -10550.626076 eV Core-core repulsion = 8372.625189 eV Total energy + Delta-G solvation = -2178.000886 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.04712 -36.25135 -33.84575 -31.33865 -30.39355 -28.77096 -25.49187 -21.90853 -21.39832 -17.90824 -17.38435 -15.79202 -15.31956 -14.85947 -13.66795 -13.29399 -13.04694 -12.60011 -12.17633 -11.65398 -11.22412 -10.80208 -10.30568 -9.91522 -9.38416 -9.26612 -9.17020 -8.54446 -8.26756 -7.79194 -7.09772 -4.72315 2.04846 2.31374 2.69761 3.15180 3.27961 3.34174 4.05769 4.35389 4.92691 5.32088 5.74227 5.91475 6.31494 6.48191 6.79429 6.92705 7.26005 7.43378 7.99627 8.16293 8.49049 8.62553 9.01164 9.86170 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.015542 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.500101 B = 1801.121368 C = 2497.872278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.104 3.896 3 Si 0.918 3.082 4 H -0.237 1.237 5 H -0.261 1.261 6 H -0.293 1.293 7 C -0.424 4.424 8 H 0.106 0.894 9 C 0.042 3.958 10 C 0.019 3.981 11 O -0.474 6.474 12 C -0.142 4.142 13 C -0.022 4.022 14 N -0.443 5.443 15 C 0.039 3.961 16 Br -0.050 7.050 17 H 0.289 0.711 18 H 0.364 0.636 19 H 0.116 0.884 20 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.668 -1.034 0.872 3.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.120 4.120 3 Si 0.744 3.256 4 H -0.162 1.162 5 H -0.185 1.185 6 H -0.221 1.221 7 C -0.451 4.451 8 H 0.124 0.876 9 C 0.034 3.966 10 C -0.034 4.034 11 O -0.284 6.284 12 C -0.163 4.163 13 C -0.179 4.179 14 N -0.153 5.153 15 C -0.182 4.182 16 Br 0.033 6.967 17 H 0.099 0.901 18 H 0.219 0.781 19 H 0.134 0.866 20 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.016 -1.374 -0.509 4.275 hybrid contribution -0.426 1.035 1.180 1.626 sum 3.589 -0.339 0.671 3.667 Atomic orbital electron populations 1.69736 1.08473 1.30934 1.31632 1.26150 0.94522 1.01975 0.89327 0.86073 0.80241 0.79325 0.79923 1.16199 1.18511 1.22055 1.19400 0.94239 0.97383 1.34092 0.87597 1.18622 0.94139 0.91502 0.92352 1.18624 0.88928 1.01767 0.94051 1.85051 1.55054 1.37176 1.51091 1.21987 0.94304 0.99309 1.00707 1.21572 0.99057 1.01593 0.95699 1.66665 1.17821 1.18703 1.12107 1.22577 0.90699 1.07290 0.97673 1.96401 1.92732 1.72032 1.35485 0.90051 0.78060 0.86648 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.79 13.93 55.55 0.77 -19.01 14 2 C 0.10 2.60 4.87 -17.32 -0.08 2.51 14 3 Si 0.92 21.20 24.77 -169.99 -4.21 16.99 14 4 H -0.24 -5.35 6.05 56.52 0.34 -5.01 14 5 H -0.26 -6.47 7.11 56.52 0.40 -6.07 14 6 H -0.29 -6.51 7.11 56.52 0.40 -6.10 14 7 C -0.42 -10.91 8.52 -37.84 -0.32 -11.24 14 8 H 0.11 2.85 7.59 -52.49 -0.40 2.46 14 9 C 0.04 1.03 4.75 -106.50 -0.51 0.52 14 10 C 0.02 0.44 5.32 -38.02 -0.20 0.23 14 11 O -0.47 -9.99 8.60 -18.29 -0.16 -10.15 14 12 C -0.14 -2.92 10.05 -39.37 -0.40 -3.31 14 13 C -0.02 -0.45 11.16 -17.41 -0.19 -0.64 14 14 N -0.44 -10.38 10.30 -11.04 -0.11 -10.49 14 15 C 0.04 0.94 7.24 -16.70 -0.12 0.82 14 16 Br -0.05 -1.07 32.55 -68.01 -2.21 -3.29 14 17 H 0.29 6.62 8.30 -40.82 -0.34 6.29 14 18 H 0.36 6.22 9.06 45.56 0.41 6.64 14 19 H 0.12 1.99 8.06 -52.48 -0.42 1.57 14 20 H 0.14 2.35 8.06 -52.48 -0.42 1.93 14 LS Contribution 203.39 15.07 3.07 3.07 Total: -1.00 -27.58 203.39 -4.71 -32.29 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -0.02 Total: 1.69 kcal Atomic # 6 Polarization: -9.27 SS G_CDS: -1.83 Total: -11.10 kcal Atomic # 7 Polarization: -30.16 SS G_CDS: 0.66 Total: -29.50 kcal Atomic # 8 Polarization: -9.99 SS G_CDS: -0.16 Total: -10.15 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.21 Total: 16.99 kcal Atomic # 35 Polarization: -1.07 SS G_CDS: -2.21 Total: -3.29 kcal Total LS contribution 3.07 Total: 3.07 kcal Total: -27.58 -4.71 -32.29 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306324835.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.181 kcal (2) G-P(sol) polarization free energy of solvation -27.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds