Wall clock time and date at job start Mon Mar 30 2020 04:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86800 * 119.99945 * 2 1 4 4 H 1.48492 * 109.47715 * 84.71023 * 3 2 1 5 5 H 1.48505 * 109.46923 * 204.71268 * 3 2 1 6 6 H 1.48502 * 109.46746 * 324.70583 * 3 2 1 7 7 C 1.39943 * 119.99929 * 179.71644 * 2 1 3 8 8 H 1.07997 * 119.99550 * 23.28538 * 7 2 1 9 9 C 1.41155 * 119.99776 * 203.27541 * 7 2 1 10 10 C 1.41738 * 120.72199 * 40.46397 * 9 7 2 11 11 O 1.35531 * 120.96530 * 359.97438 * 10 9 7 12 12 C 1.38840 * 118.06706 * 179.97438 * 10 9 7 13 13 C 1.38198 * 119.37846 * 0.02562 * 12 10 9 14 14 N 1.32192 * 121.43518 * 359.97438 * 13 12 10 15 15 C 1.31597 * 122.14151 * 359.70312 * 14 13 12 16 16 Br 1.89101 * 119.79412 * 180.29418 * 15 14 13 17 17 H 0.96996 * 119.99979 * 0.02562 * 1 2 3 18 18 H 0.96698 * 114.00082 * 90.00348 * 11 10 9 19 19 H 1.08003 * 120.31225 * 180.02562 * 12 10 9 20 20 H 1.08003 * 119.28359 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.3785 2.1111 1.3940 5 1 3.5917 1.4105 -0.5854 6 1 1.5005 2.6177 -0.8090 7 6 2.0084 -1.2119 0.0060 8 1 1.5343 -2.1109 -0.3593 9 6 3.3338 -1.2592 0.4893 10 6 3.7104 -0.5271 1.6430 11 8 2.8100 0.2356 2.3096 12 6 5.0285 -0.6139 2.0704 13 6 5.9193 -1.4011 1.3655 14 7 5.5440 -2.0748 0.2919 15 6 4.3087 -2.0395 -0.1605 16 35 3.8424 -3.0364 -1.6982 17 1 -0.4850 0.8400 -0.0004 18 1 2.3385 -0.2348 3.0107 19 1 5.3547 -0.0715 2.9455 20 1 6.9442 -1.4678 1.6996 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306324835.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:39 Heat of formation + Delta-G solvation = -36.173365 kcal Electronic energy + Delta-G solvation = -10551.496082 eV Core-core repulsion = 8372.625189 eV Total energy + Delta-G solvation = -2178.870893 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -40.79224 -37.95312 -35.66449 -33.10643 -32.15147 -30.50982 -27.30131 -23.66618 -23.15440 -19.73425 -19.08898 -17.57998 -17.07605 -16.57839 -15.36108 -15.05180 -14.83540 -14.39063 -13.89463 -13.40461 -13.06369 -12.61814 -12.11909 -11.63886 -11.13282 -11.00274 -10.95291 -10.29910 -10.01359 -9.56136 -8.93949 -6.60256 0.29927 0.54795 0.93991 1.34141 1.43746 1.51178 2.21777 2.55693 3.15279 3.61959 4.13018 4.36697 4.54534 4.79873 5.05249 5.21280 5.50482 5.76383 6.13935 6.32938 6.65074 7.00911 7.25862 8.08450 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.028176 B = 0.015542 C = 0.011207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.500101 B = 1801.121368 C = 2497.872278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.084 3.916 3 Si 0.959 3.041 4 H -0.225 1.225 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.456 4.456 8 H 0.079 0.921 9 C 0.023 3.977 10 C 0.022 3.978 11 O -0.480 6.480 12 C -0.140 4.140 13 C -0.004 4.004 14 N -0.463 5.463 15 C 0.014 3.986 16 Br -0.039 7.039 17 H 0.297 0.703 18 H 0.385 0.615 19 H 0.158 0.842 20 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.286 -0.240 2.230 5.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.136 4.136 3 Si 0.784 3.216 4 H -0.150 1.150 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.484 4.484 8 H 0.097 0.903 9 C 0.016 3.984 10 C -0.031 4.031 11 O -0.292 6.292 12 C -0.161 4.161 13 C -0.163 4.163 14 N -0.174 5.174 15 C -0.205 4.205 16 Br 0.044 6.956 17 H 0.107 0.893 18 H 0.243 0.757 19 H 0.175 0.825 20 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 5.603 -0.592 0.847 5.697 hybrid contribution -0.711 0.722 0.857 1.327 sum 4.892 0.130 1.704 5.182 Atomic orbital electron populations 1.69734 1.09052 1.31792 1.33744 1.26487 0.94825 1.03162 0.89117 0.85520 0.78008 0.77806 0.80280 1.14966 1.21317 1.21034 1.19206 0.95221 0.96987 1.36938 0.90303 1.18867 0.93933 0.92416 0.93177 1.18903 0.90239 1.00489 0.93472 1.84945 1.55153 1.37377 1.51719 1.22396 0.92999 0.98937 1.01732 1.22442 1.00920 0.99107 0.93873 1.66783 1.17288 1.19918 1.13367 1.22847 0.91183 1.07917 0.98536 1.96372 1.92836 1.71611 1.34786 0.89250 0.75707 0.82485 0.80520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.69 13.93 21.83 0.30 -41.39 14 2 C 0.08 4.22 4.87 85.25 0.42 4.64 14 3 Si 0.96 42.87 24.77 68.60 1.70 44.57 14 4 H -0.23 -9.52 6.05 99.48 0.60 -8.92 14 5 H -0.29 -14.00 7.11 99.48 0.71 -13.29 14 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 14 7 C -0.46 -23.79 8.52 23.40 0.20 -23.59 14 8 H 0.08 4.43 7.59 -2.91 -0.02 4.40 14 9 C 0.02 1.14 4.75 -21.08 -0.10 1.04 14 10 C 0.02 0.96 5.32 23.28 0.12 1.09 14 11 O -0.48 -18.93 8.60 -88.35 -0.76 -19.69 14 12 C -0.14 -5.14 10.05 22.40 0.23 -4.91 14 13 C 0.00 -0.17 11.16 84.63 0.94 0.78 14 14 N -0.46 -20.60 10.30 -188.83 -1.94 -22.54 14 15 C 0.01 0.66 7.24 85.35 0.62 1.27 14 16 Br -0.04 -1.70 32.55 -20.37 -0.66 -2.36 14 17 H 0.30 13.65 8.30 -92.71 -0.77 12.88 14 18 H 0.38 12.13 9.06 -74.06 -0.67 11.46 14 19 H 0.16 4.46 8.06 -2.91 -0.02 4.44 14 20 H 0.18 5.10 8.06 -2.91 -0.02 5.08 14 Total: -1.00 -57.92 203.39 1.57 -56.35 By element: Atomic # 1 Polarization: 4.23 SS G_CDS: 0.51 Total: 4.74 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 2.43 Total: -19.68 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -1.64 Total: -63.93 kcal Atomic # 8 Polarization: -18.93 SS G_CDS: -0.76 Total: -19.69 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 1.70 Total: 44.57 kcal Atomic # 35 Polarization: -1.70 SS G_CDS: -0.66 Total: -2.36 kcal Total: -57.92 1.57 -56.35 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306324835.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.179 kcal (2) G-P(sol) polarization free energy of solvation -57.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds