Wall clock time and date at job start Mon Mar 30 2020 04:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30781 * 1 3 3 Si 1.86804 * 119.99980 * 2 1 4 4 H 1.48505 * 109.46740 * 269.99330 * 3 2 1 5 5 H 1.48501 * 109.47188 * 29.99393 * 3 2 1 6 6 H 1.48500 * 109.47191 * 149.99576 * 3 2 1 7 7 C 1.39993 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00566 * 180.02562 * 7 2 1 9 9 C 1.41152 * 119.99981 * 0.02562 * 7 2 1 10 10 C 1.40770 * 119.74335 * 179.97438 * 9 7 2 11 11 C 1.36891 * 119.21721 * 179.97438 * 10 9 7 12 12 C 1.39542 * 118.67859 * 0.02562 * 11 10 9 13 13 O 1.35691 * 120.28711 * 179.97438 * 12 11 10 14 14 C 1.39655 * 119.42578 * 359.97438 * 12 11 10 15 15 Br 1.89100 * 119.62829 * 179.97438 * 14 12 11 16 16 N 1.31414 * 120.74028 * 0.25873 * 14 12 11 17 17 H 0.97004 * 120.00030 * 0.02562 * 1 2 3 18 18 H 1.08001 * 120.38934 * 0.02562 * 10 9 7 19 19 H 1.07999 * 120.66143 * 179.97438 * 11 10 9 20 20 H 0.96704 * 113.99618 * 270.01484 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.4894 2.0463 -1.4002 5 1 1.4392 2.6528 0.6999 6 1 3.5393 1.4403 0.7001 7 6 2.0078 -1.2124 0.0005 8 1 3.0879 -1.2124 0.0010 9 6 1.3021 -2.4348 0.0005 10 6 2.0115 -3.6507 0.0005 11 6 1.3162 -4.8299 0.0011 12 6 -0.0785 -4.7850 0.0011 13 8 -0.8002 -5.9340 0.0011 14 6 -0.7251 -3.5471 0.0010 15 35 -2.6149 -3.4795 0.0003 16 7 -0.0350 -2.4288 -0.0041 17 1 -0.4850 0.8401 -0.0004 18 1 3.0915 -3.6532 0.0010 19 1 1.8367 -5.7762 0.0007 20 1 -1.0092 -6.2672 -0.8824 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306413882.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:16 Heat of formation + Delta-G solvation = -13.039115 kcal Electronic energy + Delta-G solvation = -10243.920939 eV Core-core repulsion = 8066.053222 eV Total energy + Delta-G solvation = -2177.867716 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -38.68646 -36.09567 -33.54752 -31.41953 -29.85978 -28.68287 -25.30738 -21.90814 -21.33070 -17.73782 -17.28884 -15.80731 -14.81387 -14.46614 -14.10785 -12.80723 -12.49550 -12.27849 -11.71815 -11.33972 -11.17320 -10.79937 -10.36240 -10.07542 -10.03842 -9.37212 -9.28296 -8.38037 -7.82872 -7.59655 -6.62172 -4.71695 2.31579 2.61457 2.70414 3.00218 3.01360 3.04187 3.81025 4.45181 5.28809 5.59567 5.88612 6.37406 6.47311 6.66180 6.98443 7.18010 7.28146 7.57909 7.92356 8.33937 8.52800 8.71426 9.66268 10.09067 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.036026 B = 0.010490 C = 0.008154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.027901 B = 2668.505787 C = 3433.126141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.701 5.701 2 C 0.063 3.937 3 Si 0.913 3.087 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.413 4.413 8 H 0.091 0.909 9 C 0.250 3.750 10 C -0.251 4.251 11 C -0.066 4.066 12 C -0.090 4.090 13 O -0.486 6.486 14 C 0.159 3.841 15 Br -0.066 7.066 16 N -0.454 5.454 17 H 0.279 0.721 18 H 0.110 0.890 19 H 0.111 0.889 20 H 0.354 0.646 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -2.975 -1.509 3.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.321 5.321 2 C -0.165 4.165 3 Si 0.737 3.263 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.443 4.443 8 H 0.109 0.891 9 C 0.125 3.875 10 C -0.274 4.274 11 C -0.091 4.091 12 C -0.143 4.143 13 O -0.290 6.290 14 C -0.067 4.067 15 Br 0.017 6.983 16 N -0.170 5.170 17 H 0.090 0.910 18 H 0.128 0.872 19 H 0.129 0.871 20 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -3.084 -1.916 -0.880 3.736 hybrid contribution 1.159 -0.131 -0.537 1.284 sum -1.926 -2.047 -1.417 3.147 Atomic orbital electron populations 1.70126 1.07249 1.28571 1.26184 1.26163 0.95037 1.01486 0.93781 0.86225 0.80399 0.80307 0.79408 1.19206 1.19894 1.18365 1.19688 0.94610 0.89185 1.40810 0.89097 1.18542 0.87017 0.92448 0.89527 1.21525 0.99364 0.92792 1.13743 1.20854 0.92403 0.97842 0.98021 1.18526 0.89612 0.84509 1.21664 1.84878 1.73788 1.39082 1.31296 1.23158 0.90815 0.91411 1.01322 1.96463 1.05036 1.99148 1.97614 1.68434 1.07421 1.23967 1.17146 0.90992 0.87228 0.87127 0.79497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.70 -18.16 11.45 55.55 0.64 -17.53 14 2 C 0.06 1.52 5.50 -17.34 -0.10 1.43 14 3 Si 0.91 17.73 29.56 -169.99 -5.02 12.71 14 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 14 5 H -0.27 -5.26 7.11 56.52 0.40 -4.85 14 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 14 7 C -0.41 -10.48 9.13 -37.82 -0.35 -10.82 14 8 H 0.09 2.11 7.85 -52.48 -0.41 1.70 14 9 C 0.25 6.60 6.55 -84.99 -0.56 6.05 14 10 C -0.25 -5.87 9.77 -39.11 -0.38 -6.25 14 11 C -0.07 -1.47 10.05 -39.58 -0.40 -1.86 14 12 C -0.09 -2.09 6.75 -38.57 -0.26 -2.35 14 13 O -0.49 -9.81 12.85 -18.78 -0.24 -10.05 14 14 C 0.16 3.97 7.19 -17.20 -0.12 3.85 14 15 Br -0.07 -1.41 33.33 -68.01 -2.27 -3.68 14 16 N -0.45 -12.40 7.81 -9.36 -0.07 -12.48 14 17 H 0.28 6.54 8.30 -40.82 -0.34 6.21 14 18 H 0.11 2.29 8.06 -52.49 -0.42 1.86 14 19 H 0.11 2.09 8.06 -52.49 -0.42 1.66 14 20 H 0.35 5.60 9.06 45.56 0.41 6.02 14 LS Contribution 212.59 15.07 3.20 3.20 Total: -1.00 -28.53 212.59 -5.91 -34.44 By element: Atomic # 1 Polarization: 3.32 SS G_CDS: 0.02 Total: 3.34 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.16 Total: -9.96 kcal Atomic # 7 Polarization: -30.57 SS G_CDS: 0.56 Total: -30.00 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.24 Total: -10.05 kcal Atomic # 14 Polarization: 17.73 SS G_CDS: -5.02 Total: 12.71 kcal Atomic # 35 Polarization: -1.41 SS G_CDS: -2.27 Total: -3.68 kcal Total LS contribution 3.20 Total: 3.20 kcal Total: -28.53 -5.91 -34.44 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306413882.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.397 kcal (2) G-P(sol) polarization free energy of solvation -28.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds