Wall clock time and date at job start Mon Mar 30 2020 04:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 S 1.77239 * 127.79165 * 97.34546 * 3 2 1 5 5 N 1.69645 * 95.35428 * 180.19958 * 4 3 2 6 6 C 1.29995 * 107.83121 * 359.82083 * 5 4 3 7 7 Cl 1.73600 * 120.79290 * 180.02562 * 6 5 4 8 8 C 1.37954 * 118.41635 * 0.02562 * 6 5 4 9 9 N 1.39687 * 123.01238 * 179.97438 * 8 6 5 10 10 C 1.46893 * 110.99878 * 60.02101 * 9 8 6 11 11 C 1.50706 * 109.47176 * 180.02562 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 H 1.00904 * 110.99828 * 296.07285 * 9 8 6 20 20 H 1.09001 * 109.46739 * 60.00437 * 10 9 8 21 21 H 1.09000 * 109.47767 * 300.00696 * 10 9 8 22 22 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 16 3.6540 0.1802 -1.3891 5 7 5.0859 0.0587 -0.4874 6 6 4.7581 -0.1002 0.7605 7 17 5.9772 -0.2618 1.9859 8 6 3.4185 -0.1374 1.0878 9 7 2.9591 -0.3042 2.3964 10 6 3.4375 0.7800 3.2644 11 6 2.9236 0.5663 4.6649 12 1 2.3039 -0.2897 4.8878 13 6 3.2444 1.4634 5.6614 14 7 3.9986 2.5060 5.3897 15 14 2.6079 1.1980 7.3974 16 1 3.1038 -0.1033 7.9130 17 1 3.0914 2.2941 8.2749 18 1 1.1229 1.1920 7.3846 19 1 3.2281 -1.2054 2.7620 20 1 3.0746 1.7355 2.8857 21 1 4.5275 0.7836 3.2743 22 1 4.2247 3.1370 6.0910 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306471097.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:31:16 Heat of formation + Delta-G solvation = 74.169018 kcal Electronic energy + Delta-G solvation = -12516.555603 eV Core-core repulsion = 10031.942822 eV Total energy + Delta-G solvation = -2484.612780 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 242.993 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.50195 -36.66865 -36.17454 -35.04650 -32.62023 -30.50246 -26.89638 -24.75030 -22.31486 -21.39078 -18.60167 -17.58963 -16.65634 -15.58873 -15.27067 -14.57494 -14.42784 -13.75440 -13.37740 -13.27980 -12.86923 -12.57136 -11.79845 -11.57518 -11.36502 -11.16121 -11.00302 -10.85088 -10.70436 -10.18728 -9.50070 -9.37706 -8.67005 -8.55067 -7.88493 -6.14166 -4.17170 0.00086 0.73834 0.99936 1.90602 2.44550 2.95392 3.28486 3.31779 3.33055 3.35963 3.95940 4.32349 4.54350 4.91263 5.22618 5.34416 6.05254 6.93576 7.11628 7.48958 7.56232 7.88168 7.92684 8.28073 8.87746 9.47121 10.96356 Molecular weight = 242.99amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.007880 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.673054 B = 3552.337583 C = 4356.731378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C 0.305 3.695 3 C -0.103 4.103 4 S 0.323 5.677 5 N -0.433 5.433 6 C 0.133 3.867 7 Cl 0.029 6.971 8 C 0.124 3.876 9 N -0.626 5.626 10 C 0.182 3.818 11 C -0.519 4.519 12 H 0.065 0.935 13 C 0.061 3.939 14 N -0.892 5.892 15 Si 0.901 3.099 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.276 1.276 19 H 0.357 0.643 20 H 0.032 0.968 21 H 0.024 0.976 22 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.857 -5.406 -10.875 12.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.065 5.065 2 C -0.012 4.012 3 C -0.236 4.236 4 S 0.472 5.528 5 N -0.258 5.258 6 C -0.074 4.074 7 Cl 0.057 6.943 8 C 0.006 3.994 9 N -0.261 5.261 10 C 0.058 3.942 11 C -0.558 4.558 12 H 0.083 0.917 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.728 3.272 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.201 1.201 19 H 0.182 0.818 20 H 0.050 0.950 21 H 0.042 0.958 22 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.624 -4.712 -12.763 13.702 hybrid contribution 0.699 -0.378 2.939 3.045 sum 2.323 -5.089 -9.824 11.305 Atomic orbital electron populations 1.81247 1.10650 1.07721 1.06910 1.23333 0.89821 0.94142 0.93885 1.21003 0.90616 1.13085 0.98906 1.84983 0.90216 1.67339 1.10291 1.76317 1.20509 1.22235 1.06764 1.23136 0.91883 1.02306 0.90037 1.98472 1.53108 1.95221 1.47507 1.19209 0.86865 0.98663 0.94709 1.58388 1.61738 1.08972 0.97034 1.20083 0.95918 0.87710 0.90474 1.20991 1.32164 1.10341 0.92301 0.91709 1.24931 0.95022 0.94955 0.99246 1.69945 1.36543 1.12876 1.33704 0.86513 0.79347 0.77748 0.83556 1.20121 1.21249 1.20100 0.81772 0.95012 0.95816 0.92628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -6.75 18.54 41.84 0.78 -5.98 14 2 C 0.30 4.91 15.83 -22.47 -0.36 4.56 14 3 C -0.10 -1.55 6.64 -37.46 -0.25 -1.80 14 4 S 0.32 3.90 23.94 -107.50 -2.57 1.32 14 5 N -0.43 -6.40 12.04 31.77 0.38 -6.02 14 6 C 0.13 2.15 7.02 -18.43 -0.13 2.02 14 7 Cl 0.03 0.48 26.04 -51.86 -1.35 -0.87 14 8 C 0.12 2.09 5.65 -84.19 -0.48 1.62 14 9 N -0.63 -12.26 6.25 -59.82 -0.37 -12.63 14 10 C 0.18 4.35 5.07 -4.98 -0.03 4.32 14 11 C -0.52 -13.73 9.32 -34.44 -0.32 -14.05 14 12 H 0.06 1.68 7.81 -52.49 -0.41 1.27 14 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 14 14 N -0.89 -25.30 13.29 55.43 0.74 -24.56 14 15 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 14 16 H -0.28 -6.25 7.11 56.52 0.40 -5.85 14 17 H -0.29 -6.62 7.11 56.52 0.40 -6.21 14 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 14 19 H 0.36 6.41 8.75 -39.29 -0.34 6.06 14 20 H 0.03 0.85 8.14 -51.93 -0.42 0.42 14 21 H 0.02 0.57 5.08 -51.93 -0.26 0.31 14 22 H 0.26 7.13 8.31 -40.82 -0.34 6.79 14 LS Contribution 244.03 15.07 3.68 3.68 Total: -1.00 -28.18 244.03 -5.97 -34.15 By element: Atomic # 1 Polarization: -2.61 SS G_CDS: -0.57 Total: -3.19 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.65 Total: -1.78 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 1.52 Total: -49.19 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 3.90 SS G_CDS: -2.57 Total: 1.32 kcal Atomic # 17 Polarization: 0.48 SS G_CDS: -1.35 Total: -0.87 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -28.18 -5.97 -34.15 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306471097.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.319 kcal (2) G-P(sol) polarization free energy of solvation -28.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds