Wall clock time and date at job start Mon Mar 30 2020 04:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30834 * 1 3 3 Si 1.86792 * 120.00543 * 2 1 4 4 H 1.48506 * 109.47266 * 275.38069 * 3 2 1 5 5 H 1.48506 * 109.47151 * 35.38154 * 3 2 1 6 6 H 1.48500 * 109.47332 * 155.38070 * 3 2 1 7 7 C 1.39946 * 119.99209 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00316 * 342.07377 * 7 2 1 9 9 C 1.41356 * 119.99632 * 162.07218 * 7 2 1 10 10 C 1.41011 * 120.63826 * 330.09340 * 9 7 2 11 11 C 1.38467 * 118.16681 * 180.02562 * 10 9 7 12 12 O 1.35920 * 120.32789 * 179.97438 * 11 10 9 13 13 C 1.39153 * 119.34009 * 359.97438 * 11 10 9 14 14 N 1.32010 * 121.25948 * 359.97438 * 13 11 10 15 15 C 1.31587 * 122.01811 * 0.02562 * 14 13 11 16 16 Br 1.89103 * 119.75704 * 179.97438 * 15 14 13 17 17 H 0.97005 * 119.99448 * 359.97438 * 1 2 3 18 18 H 1.07998 * 120.91558 * 0.03551 * 10 9 7 19 19 H 0.96704 * 113.99863 * 270.02008 * 12 11 10 20 20 H 1.08003 * 119.37130 * 179.72666 * 13 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.3763 2.1119 -1.3939 5 1 1.5015 2.6171 0.8107 6 1 3.5922 1.4098 0.5832 7 6 2.0079 -1.2121 0.0005 8 1 1.5072 -2.1245 0.2888 9 6 3.3700 -1.2420 -0.3763 10 6 3.8791 -0.3118 -1.3057 11 6 5.2210 -0.3880 -1.6385 12 8 5.7577 0.4864 -2.5300 13 6 6.0146 -1.3687 -1.0513 14 7 5.5125 -2.2269 -0.1830 15 6 4.2452 -2.2013 0.1703 16 35 3.5934 -3.4623 1.4197 17 1 -0.4849 0.8401 0.0004 18 1 3.2401 0.4396 -1.7456 19 1 5.7175 0.1862 -3.4484 20 1 7.0603 -1.4314 -1.3139 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306488779.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:55 Heat of formation + Delta-G solvation = -23.113039 kcal Electronic energy + Delta-G solvation = -10346.619499 eV Core-core repulsion = 8168.314945 eV Total energy + Delta-G solvation = -2178.304555 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.11077 -36.48242 -34.23451 -31.54329 -30.66083 -28.15928 -25.69473 -22.52311 -21.34907 -18.16156 -17.07330 -16.03425 -15.63182 -14.92311 -14.34665 -13.32146 -12.72417 -12.44431 -12.25604 -11.69223 -11.38773 -10.99394 -10.45280 -10.15330 -9.80507 -9.64111 -9.22942 -8.53509 -8.35873 -7.73942 -7.28870 -4.86928 1.94108 2.33995 2.70305 2.93718 3.02352 3.14702 3.74749 4.18854 4.72586 5.15059 5.74068 5.88684 6.22088 6.45005 6.69183 7.04274 7.08160 7.31880 7.91355 8.03010 8.27122 8.37903 8.97753 9.69236 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.022891 B = 0.015969 C = 0.009967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.918401 B = 1752.971416 C = 2808.499014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.086 3.914 3 Si 0.908 3.092 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.409 4.409 8 H 0.113 0.887 9 C 0.075 3.925 10 C -0.229 4.229 11 C 0.106 3.894 12 O -0.505 6.505 13 C -0.060 4.060 14 N -0.417 5.417 15 C 0.015 3.985 16 Br -0.050 7.050 17 H 0.293 0.707 18 H 0.122 0.878 19 H 0.382 0.618 20 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.458 -1.187 -0.870 3.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.138 4.138 3 Si 0.733 3.267 4 H -0.190 1.190 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.436 4.436 8 H 0.131 0.869 9 C 0.067 3.933 10 C -0.256 4.256 11 C 0.060 3.940 12 O -0.313 6.313 13 C -0.219 4.219 14 N -0.127 5.127 15 C -0.207 4.207 16 Br 0.033 6.967 17 H 0.104 0.896 18 H 0.139 0.861 19 H 0.236 0.764 20 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 3.581 -1.826 0.456 4.045 hybrid contribution -0.258 1.433 -1.195 1.884 sum 3.323 -0.393 -0.740 3.426 Atomic orbital electron populations 1.69665 1.08153 1.31167 1.30797 1.26261 0.94852 1.01992 0.90697 0.86326 0.81481 0.79389 0.79487 1.19027 1.20824 1.16628 1.19757 0.92129 0.97050 1.34664 0.86932 1.18142 0.93949 0.90535 0.90662 1.21660 0.94631 1.04715 1.04554 1.19317 0.91477 0.90181 0.93031 1.84753 1.82431 1.44916 1.19222 1.21952 0.99438 0.96977 1.03522 1.66661 1.13532 1.22277 1.10181 1.22388 0.91157 1.02134 1.05018 1.96391 1.86879 1.56691 1.56719 0.89619 0.86065 0.76375 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.02 13.93 55.55 0.77 -18.24 14 2 C 0.09 2.09 5.42 -17.34 -0.09 1.99 14 3 Si 0.91 19.82 24.53 -169.99 -4.17 15.65 14 4 H -0.26 -5.59 6.71 56.52 0.38 -5.21 14 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 14 6 H -0.24 -5.68 6.85 56.52 0.39 -5.29 14 7 C -0.41 -10.37 8.90 -37.76 -0.34 -10.71 14 8 H 0.11 2.96 7.21 -52.49 -0.38 2.58 14 9 C 0.07 1.85 5.11 -106.66 -0.55 1.31 14 10 C -0.23 -5.36 7.23 -38.45 -0.28 -5.64 14 11 C 0.11 2.29 6.72 -39.16 -0.26 2.02 14 12 O -0.51 -9.16 13.52 -19.49 -0.26 -9.42 14 13 C -0.06 -1.29 11.13 -17.14 -0.19 -1.48 14 14 N -0.42 -9.84 10.30 -10.81 -0.11 -9.95 14 15 C 0.01 0.35 7.24 -16.66 -0.12 0.23 14 16 Br -0.05 -1.06 32.34 -68.01 -2.20 -3.26 14 17 H 0.29 6.43 8.30 -40.82 -0.34 6.09 14 18 H 0.12 2.77 4.82 -52.49 -0.25 2.52 14 19 H 0.38 4.79 9.06 45.56 0.41 5.20 14 20 H 0.14 2.56 8.06 -52.48 -0.42 2.14 14 LS Contribution 204.49 15.07 3.08 3.08 Total: -1.00 -27.31 204.49 -4.53 -31.84 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 0.19 Total: 2.58 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.83 Total: -12.27 kcal Atomic # 7 Polarization: -28.85 SS G_CDS: 0.66 Total: -28.19 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.26 Total: -9.42 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -4.17 Total: 15.65 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -2.20 Total: -3.26 kcal Total LS contribution 3.08 Total: 3.08 kcal Total: -27.31 -4.53 -31.84 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306488779.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.728 kcal (2) G-P(sol) polarization free energy of solvation -27.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds