Wall clock time and date at job start Mon Mar 30 2020 04:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30754 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47262 * 89.99792 * 3 2 1 5 5 H 1.48499 * 109.47207 * 209.99482 * 3 2 1 6 6 H 1.48501 * 109.47230 * 329.99916 * 3 2 1 7 7 C 1.40015 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99833 * 15.80894 * 7 2 1 9 9 C 1.41385 * 120.00197 * 195.80591 * 7 2 1 10 10 C 1.40504 * 119.79594 * 188.66463 * 9 7 2 11 11 C 1.38716 * 118.92470 * 179.73040 * 10 9 7 12 12 O 1.35783 * 120.76286 * 180.26137 * 11 10 9 13 13 C 1.39633 * 118.46687 * 0.53720 * 11 10 9 14 14 Br 1.89103 * 120.26094 * 179.70431 * 13 11 10 15 15 C 1.38651 * 119.47711 * 359.72273 * 13 11 10 16 16 N 1.31492 * 121.05640 * 0.02562 * 15 13 11 17 17 H 0.96997 * 120.00166 * 174.79929 * 1 2 3 18 18 H 1.08005 * 120.53615 * 0.02562 * 10 9 7 19 19 H 0.96700 * 114.00136 * 270.27947 * 12 11 10 20 20 H 1.07998 * 119.47337 * 180.02562 * 15 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2416 1.6177 0.0000 4 1 2.4890 2.0464 1.4001 5 1 3.5392 1.4401 -0.6999 6 1 1.4391 2.6526 -0.7001 7 6 2.0076 -1.2126 0.0005 8 1 1.4982 -2.1303 -0.2539 9 6 3.3814 -1.2356 0.3341 10 6 4.1228 -2.4161 0.1584 11 6 5.4707 -2.4169 0.4861 12 8 6.2236 -3.5355 0.3262 13 6 6.0338 -1.2426 0.9897 14 35 7.8645 -1.1895 1.4608 15 6 5.2401 -0.1160 1.1420 16 7 3.9654 -0.1358 0.8202 17 1 -0.4850 -0.8365 -0.0761 18 1 3.6519 -3.3071 -0.2301 19 1 6.2381 -4.1139 1.1010 20 1 5.6759 0.7923 1.5311 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307151118.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:37 Heat of formation + Delta-G solvation = -32.668524 kcal Electronic energy + Delta-G solvation = -10254.214677 eV Core-core repulsion = 8075.495765 eV Total energy + Delta-G solvation = -2178.718912 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -39.11580 -36.68156 -33.99354 -31.46438 -30.22544 -28.91497 -25.30015 -22.53606 -21.19203 -18.92432 -17.25808 -15.83508 -15.26182 -14.51369 -14.17100 -13.17976 -12.85714 -12.67857 -12.38381 -11.71610 -11.05405 -10.61634 -10.20059 -10.05171 -9.88396 -9.55683 -9.31543 -8.44518 -8.15598 -7.98147 -7.54520 -5.06952 2.09654 2.25095 2.62645 3.42600 3.49844 3.82192 4.22909 4.27659 4.74801 5.22996 5.47439 6.07996 6.16269 6.62103 6.76887 6.82992 7.16162 7.21111 7.76895 7.87494 8.21028 8.31981 9.18870 9.70978 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.050764 B = 0.009059 C = 0.007788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.443465 B = 3090.207302 C = 3594.378587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.047 3.953 3 Si 1.140 2.860 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.322 1.322 7 C -0.452 4.452 8 H 0.087 0.913 9 C 0.255 3.745 10 C -0.279 4.279 11 C 0.196 3.804 12 O -0.496 6.496 13 C -0.306 4.306 14 Br -0.089 7.089 15 C 0.198 3.802 16 N -0.566 5.566 17 H 0.288 0.712 18 H 0.117 0.883 19 H 0.384 0.616 20 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.706 -1.983 2.883 10.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.178 4.178 3 Si 0.971 3.029 4 H -0.206 1.206 5 H -0.204 1.204 6 H -0.254 1.254 7 C -0.482 4.482 8 H 0.106 0.894 9 C 0.134 3.866 10 C -0.303 4.303 11 C 0.145 3.855 12 O -0.306 6.306 13 C -0.391 4.391 14 Br -0.007 7.007 15 C 0.032 3.968 16 N -0.285 5.285 17 H 0.100 0.900 18 H 0.135 0.865 19 H 0.239 0.761 20 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.567 0.468 2.631 9.933 hybrid contribution 0.114 -2.989 0.200 2.997 sum 9.680 -2.521 2.831 10.396 Atomic orbital electron populations 1.70620 1.08302 1.33430 1.27928 1.27883 0.95181 1.06287 0.88404 0.82185 0.72764 0.69660 0.78288 1.20646 1.20384 1.25353 1.20908 0.93068 0.97291 1.36947 0.89447 1.18467 0.93403 0.86498 0.88219 1.21875 0.92391 1.01179 1.14840 1.18150 0.88752 0.85167 0.93460 1.84699 1.70662 1.33308 1.41915 1.22268 0.90634 0.99841 1.26353 1.96360 1.12457 1.99105 1.92738 1.22104 0.88899 0.94888 0.90941 1.67010 1.10752 1.28460 1.22282 0.90044 0.86523 0.76072 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.04 13.65 55.55 0.76 -19.28 14 2 C 0.05 1.20 5.51 -17.34 -0.10 1.10 14 3 Si 1.14 26.44 25.93 -169.99 -4.41 22.03 14 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 14 5 H -0.28 -6.52 6.54 56.52 0.37 -6.15 14 6 H -0.32 -7.29 7.11 56.52 0.40 -6.89 14 7 C -0.45 -11.62 9.51 -37.72 -0.36 -11.98 14 8 H 0.09 2.22 8.06 -52.49 -0.42 1.79 14 9 C 0.25 6.37 6.27 -85.01 -0.53 5.84 14 10 C -0.28 -6.40 9.80 -38.55 -0.38 -6.77 14 11 C 0.20 4.14 6.75 -38.88 -0.26 3.88 14 12 O -0.50 -9.04 12.95 -19.06 -0.25 -9.28 14 13 C -0.31 -6.38 6.28 -38.91 -0.24 -6.62 14 14 Br -0.09 -1.55 33.26 -68.01 -2.26 -3.81 14 15 C 0.20 4.31 10.93 -17.54 -0.19 4.12 14 16 N -0.57 -13.83 5.03 -11.16 -0.06 -13.89 14 17 H 0.29 7.00 8.73 -40.82 -0.36 6.64 14 18 H 0.12 2.52 8.06 -52.48 -0.42 2.10 14 19 H 0.38 5.15 9.06 45.56 0.41 5.56 14 20 H 0.14 2.63 8.06 -52.49 -0.42 2.20 14 LS Contribution 208.59 15.07 3.14 3.14 Total: -1.00 -27.10 208.59 -5.17 -32.28 By element: Atomic # 1 Polarization: -0.70 SS G_CDS: -0.04 Total: -0.74 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.06 Total: -10.44 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.70 Total: -33.18 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: -0.25 Total: -9.28 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: -4.41 Total: 22.03 kcal Atomic # 35 Polarization: -1.55 SS G_CDS: -2.26 Total: -3.81 kcal Total LS contribution 3.14 Total: 3.14 kcal Total: -27.10 -5.17 -32.28 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307151118.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.389 kcal (2) G-P(sol) polarization free energy of solvation -27.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds