Wall clock time and date at job start Mon Mar 30 2020 04:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30860 * 1 3 3 Si 1.86796 * 120.00482 * 2 1 4 4 H 1.48496 * 109.47320 * 240.00139 * 3 2 1 5 5 H 1.48500 * 109.46968 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47028 * 119.99979 * 3 2 1 7 7 C 1.39944 * 119.99523 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99856 * 197.57344 * 7 2 1 9 9 C 1.41206 * 119.99944 * 17.57874 * 7 2 1 10 10 C 1.40679 * 120.71252 * 24.16030 * 9 7 2 11 11 N 1.31460 * 120.46553 * 179.97438 * 10 9 7 12 12 C 1.32238 * 122.16635 * 359.97438 * 11 10 9 13 13 C 1.38223 * 121.40608 * 359.97438 * 12 11 10 14 14 Br 1.89105 * 120.32921 * 180.02562 * 13 12 11 15 15 C 1.38960 * 119.33366 * 0.02562 * 13 12 11 16 16 O 1.35546 * 120.97678 * 180.02562 * 15 13 12 17 17 H 0.97002 * 119.99800 * 359.97438 * 1 2 3 18 18 H 1.07998 * 119.76880 * 359.97438 * 10 9 7 19 19 H 1.07999 * 119.29379 * 179.97438 * 12 11 10 20 20 H 0.96707 * 113.99786 * 269.98350 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2427 1.6176 0.0000 4 1 3.0964 1.6963 -1.2125 5 1 1.2778 2.7464 0.0006 6 1 3.0964 1.6962 1.2125 7 6 2.0082 -1.2120 -0.0005 8 1 3.0504 -1.2340 0.2819 9 6 1.3515 -2.4061 -0.3704 10 6 0.2136 -2.3739 -1.1969 11 7 -0.3937 -3.4886 -1.5386 12 6 0.0277 -4.6737 -1.1303 13 6 1.1378 -4.8024 -0.3168 14 35 1.7143 -6.5123 0.2486 15 6 1.8259 -3.6626 0.0812 16 8 2.9189 -3.7502 0.8780 17 1 -0.4850 0.8401 0.0004 18 1 -0.1638 -1.4268 -1.5531 19 1 -0.5069 -5.5598 -1.4389 20 1 2.7202 -3.7133 1.8237 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307337890.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:03 Heat of formation + Delta-G solvation = -41.637720 kcal Electronic energy + Delta-G solvation = -10296.532298 eV Core-core repulsion = 8117.424453 eV Total energy + Delta-G solvation = -2179.107845 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 242.964 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -40.62381 -37.78870 -36.04701 -33.03016 -31.97744 -29.87811 -27.61292 -23.55899 -23.40928 -19.48052 -19.09731 -17.65261 -16.76357 -16.45460 -15.56706 -14.88308 -14.52962 -14.03071 -13.55173 -13.29097 -13.07534 -12.73114 -12.11427 -11.96323 -11.37197 -11.29098 -11.09409 -10.13753 -9.93607 -9.53506 -8.86744 -6.55467 0.41982 0.64493 0.78450 1.40003 1.50639 1.54587 2.15534 2.57195 3.32317 3.63929 4.07821 4.52988 4.62473 4.96981 5.05242 5.25019 5.51023 5.83222 6.21071 6.44023 6.61591 7.02927 7.53504 8.11276 Molecular weight = 242.96amu Principal moments of inertia in cm(-1) A = 0.056847 B = 0.008250 C = 0.007349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.436031 B = 3393.156553 C = 3808.949525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.038 3.962 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.257 1.257 7 C -0.453 4.453 8 H 0.089 0.911 9 C 0.022 3.978 10 C 0.039 3.961 11 N -0.484 5.484 12 C -0.018 4.018 13 C -0.123 4.123 14 Br -0.045 7.045 15 C 0.020 3.980 16 O -0.480 6.480 17 H 0.300 0.700 18 H 0.149 0.851 19 H 0.155 0.845 20 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.717 -4.334 2.366 5.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.181 4.181 3 Si 0.812 3.188 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.181 1.181 7 C -0.482 4.482 8 H 0.108 0.892 9 C 0.016 3.984 10 C -0.125 4.125 11 N -0.193 5.193 12 C -0.173 4.173 13 C -0.205 4.205 14 Br 0.039 6.961 15 C -0.034 4.034 16 O -0.290 6.290 17 H 0.111 0.889 18 H 0.166 0.834 19 H 0.172 0.828 20 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 2.280 -4.879 1.540 5.601 hybrid contribution 0.476 0.915 0.915 1.379 sum 2.756 -3.963 2.455 5.415 Atomic orbital electron populations 1.69780 1.09152 1.32089 1.31935 1.26932 0.95544 1.04933 0.90664 0.85070 0.78713 0.74679 0.80328 1.18436 1.18709 1.18059 1.19718 0.98570 0.91101 1.38763 0.89248 1.19147 0.93559 0.93082 0.92603 1.22998 0.96427 0.95340 0.97727 1.67252 1.30942 0.98865 1.22227 1.22061 0.96724 0.95517 1.02996 1.23190 1.00236 0.90890 1.06177 1.96443 1.90393 1.19423 1.89890 1.18524 0.92817 0.91020 1.01006 1.84638 1.28685 1.95295 1.20358 0.88854 0.83386 0.82817 0.76072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.26 10.95 21.83 0.24 -38.02 14 2 C 0.04 1.72 5.16 85.25 0.44 2.16 14 3 Si 0.99 34.49 29.59 68.60 2.03 36.52 14 4 H -0.26 -9.01 7.11 99.48 0.71 -8.30 14 5 H -0.26 -8.56 7.11 99.48 0.71 -7.85 14 6 H -0.26 -8.64 7.11 99.48 0.71 -7.93 14 7 C -0.45 -22.54 8.78 23.41 0.21 -22.33 14 8 H 0.09 4.35 7.71 -2.91 -0.02 4.32 14 9 C 0.02 1.15 5.60 -21.10 -0.12 1.04 14 10 C 0.04 2.06 9.90 85.34 0.84 2.91 14 11 N -0.48 -24.33 10.33 -193.86 -2.00 -26.33 14 12 C -0.02 -0.82 10.91 84.63 0.92 0.11 14 13 C -0.12 -5.47 6.25 22.44 0.14 -5.33 14 14 Br -0.05 -1.59 33.26 -20.37 -0.68 -2.27 14 15 C 0.02 0.97 6.79 23.30 0.16 1.13 14 16 O -0.48 -20.43 12.35 -88.52 -1.09 -21.52 14 17 H 0.30 12.72 8.30 -92.71 -0.77 11.95 14 18 H 0.15 7.88 6.14 -2.91 -0.02 7.86 14 19 H 0.15 6.11 8.06 -2.91 -0.02 6.08 14 20 H 0.38 13.29 9.06 -74.05 -0.67 12.62 14 Total: -1.00 -54.91 210.45 1.71 -53.20 By element: Atomic # 1 Polarization: 18.13 SS G_CDS: 0.62 Total: 18.74 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: 2.59 Total: -20.32 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.76 Total: -64.35 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -1.09 Total: -21.52 kcal Atomic # 14 Polarization: 34.49 SS G_CDS: 2.03 Total: 36.52 kcal Atomic # 35 Polarization: -1.59 SS G_CDS: -0.68 Total: -2.27 kcal Total: -54.91 1.71 -53.20 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307337890.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.566 kcal (2) G-P(sol) polarization free energy of solvation -54.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds