Wall clock time and date at job start Mon Mar 30 2020 04:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21738 * 119.99618 * 0.02562 * 13 12 2 15 15 C 1.46286 * 120.00325 * 180.02562 * 13 12 2 16 16 S 1.75831 * 125.46044 * 0.02562 * 15 13 12 17 17 C 1.70603 * 91.60486 * 179.97438 * 16 15 13 18 18 C 1.33734 * 111.04017 * 0.02562 * 17 16 15 19 19 C 1.36918 * 125.46860 * 179.71812 * 15 13 12 20 20 F 1.35099 * 123.40707 * 0.02562 * 19 15 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.07997 * 124.47644 * 179.97438 * 17 16 15 27 27 H 1.07998 * 122.45028 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8578 1.1631 -2.4116 15 6 2.6342 -0.7078 -3.5518 16 16 3.0907 -2.4037 -3.6358 17 6 3.4842 -2.2654 -5.2901 18 6 3.2793 -1.0191 -5.7298 19 6 2.8021 -0.1377 -4.7853 20 9 2.5312 1.1595 -5.0483 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.2491 -1.6316 -1.1527 26 1 3.8511 -3.0768 -5.9011 27 1 3.4698 -0.7266 -6.7517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307347740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:47 Heat of formation + Delta-G solvation = -52.756478 kcal Electronic energy + Delta-G solvation = -14957.499970 eV Core-core repulsion = 12142.587256 eV Total energy + Delta-G solvation = -2814.912714 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.047 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.65551 -38.94941 -37.21263 -34.80120 -32.45414 -30.21752 -28.45052 -25.29563 -24.83651 -22.05325 -19.94400 -19.61851 -18.58405 -16.99987 -16.11563 -15.67707 -15.42212 -15.04186 -14.52690 -14.18144 -14.03828 -13.66513 -13.05238 -12.49661 -12.40442 -11.93818 -11.69241 -11.16161 -11.09847 -10.98299 -10.76598 -10.32678 -10.25644 -9.30868 -9.07639 -8.94807 -8.58219 -8.50231 -7.97923 -6.14035 -4.23644 0.43016 1.32220 1.73379 2.19611 3.23201 3.30810 3.33514 3.72398 3.91335 4.30036 4.37558 4.90500 5.15616 5.18694 5.30080 5.60308 5.85463 6.29529 6.80856 6.94172 7.12038 7.37503 7.50936 7.65960 7.88093 8.11733 8.55535 8.73216 8.99484 9.43511 10.92135 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.006197 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.439993 B = 4517.037872 C = 5032.184358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.264 3.736 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.700 5.700 13 C 0.572 3.428 14 O -0.532 6.532 15 C -0.294 4.294 16 S 0.253 5.747 17 C -0.225 4.225 18 C -0.175 4.175 19 C 0.144 3.856 20 F -0.106 7.106 21 H 0.092 0.908 22 H 0.027 0.973 23 H 0.016 0.984 24 H 0.264 0.736 25 H 0.386 0.614 26 H 0.176 0.824 27 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -8.700 -13.286 16.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.348 5.348 13 C 0.356 3.644 14 O -0.412 6.412 15 C -0.416 4.416 16 S 0.518 5.482 17 C -0.362 4.362 18 C -0.208 4.208 19 C 0.110 3.890 20 F -0.084 7.084 21 H 0.111 0.889 22 H 0.047 0.953 23 H 0.035 0.965 24 H 0.074 0.926 25 H 0.218 0.782 26 H 0.194 0.806 27 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 4.223 -8.865 -12.094 15.578 hybrid contribution 0.372 0.463 -0.406 0.719 sum 4.595 -8.402 -12.500 15.747 Atomic orbital electron populations 1.22090 0.98186 0.99268 1.01099 1.18840 0.91226 0.94106 0.79537 0.93017 1.21227 1.32576 1.13314 0.90191 0.91930 1.24889 0.94761 0.94946 0.99078 1.69911 1.35800 1.22390 1.23859 0.86370 0.78608 0.79522 0.82464 1.19678 1.20844 1.20845 1.46452 1.64866 1.13193 1.10257 1.16755 0.79096 0.86551 0.81975 1.90843 1.51118 1.14794 1.84415 1.25152 1.17155 0.99944 0.99317 1.83163 1.57982 1.03628 1.03399 1.25046 1.07983 1.01476 1.01743 1.19806 1.06449 0.92896 1.01617 1.16893 0.99992 0.80302 0.91775 1.91564 1.90831 1.32113 1.93934 0.88927 0.95339 0.96521 0.92555 0.78160 0.80627 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.39 15 2 C 0.26 6.85 2.56 -69.08 -0.18 6.68 15 3 H 0.05 1.54 7.58 -51.93 -0.39 1.15 15 4 C -0.53 -14.21 8.73 -34.44 -0.30 -14.51 15 5 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 15 7 N -0.88 -24.87 11.32 55.43 0.63 -24.25 15 8 Si 0.90 20.53 29.54 -169.99 -5.02 15.51 15 9 H -0.27 -6.03 7.11 56.52 0.40 -5.62 15 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 12 N -0.70 -15.24 5.06 -56.36 -0.29 -15.53 15 13 C 0.57 12.49 7.74 -13.03 -0.10 12.38 15 14 O -0.53 -13.78 15.80 5.15 0.08 -13.70 15 15 C -0.29 -5.00 6.45 -36.83 -0.24 -5.24 15 16 S 0.25 2.93 22.14 -107.50 -2.38 0.55 15 17 C -0.22 -2.14 10.91 29.15 0.32 -1.82 15 18 C -0.18 -2.01 10.15 -41.35 -0.42 -2.43 15 19 C 0.14 2.30 7.47 -40.25 -0.30 2.00 15 20 F -0.11 -1.94 16.42 2.25 0.04 -1.90 15 21 H 0.09 2.52 6.07 -51.93 -0.32 2.20 15 22 H 0.03 0.66 8.14 -51.93 -0.42 0.24 15 23 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 15 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 15 25 H 0.39 7.23 7.64 -40.82 -0.31 6.92 15 26 H 0.18 1.03 8.06 -52.49 -0.42 0.61 15 27 H 0.15 1.35 8.06 -52.49 -0.42 0.92 15 LS Contribution 259.92 15.07 3.92 3.92 Total: -1.00 -31.53 259.92 -6.25 -37.77 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -2.25 Total: 2.25 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.97 Total: -4.62 kcal Atomic # 7 Polarization: -40.12 SS G_CDS: 0.34 Total: -39.78 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.08 Total: -13.70 kcal Atomic # 9 Polarization: -1.94 SS G_CDS: 0.04 Total: -1.90 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 16 Polarization: 2.93 SS G_CDS: -2.38 Total: 0.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.53 -6.25 -37.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307347740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.982 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds