Wall clock time and date at job start Mon Mar 30 2020 04:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47152 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.47204 * 119.99883 * 8 6 4 11 11 H 1.48496 * 109.47191 * 240.00215 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.34777 * 120.00033 * 84.99600 * 12 2 1 14 14 O 1.21738 * 119.99618 * 0.02562 * 13 12 2 15 15 C 1.46286 * 120.00325 * 180.02562 * 13 12 2 16 16 S 1.75831 * 125.46044 * 0.02562 * 15 13 12 17 17 C 1.70603 * 91.60486 * 179.97438 * 16 15 13 18 18 C 1.33734 * 111.04017 * 0.02562 * 17 16 15 19 19 C 1.36918 * 125.46860 * 179.71812 * 15 13 12 20 20 F 1.35099 * 123.40707 * 0.02562 * 19 15 13 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 0.96992 * 120.00062 * 265.00053 * 12 2 1 26 26 H 1.07997 * 124.47644 * 179.97438 * 17 16 15 27 27 H 1.07998 * 122.45028 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.1456 -2.2878 3.6036 10 1 3.1467 -0.1875 4.8164 11 1 1.1663 -1.5869 4.8160 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 8 1.8578 1.1631 -2.4116 15 6 2.6342 -0.7078 -3.5518 16 16 3.0907 -2.4037 -3.6358 17 6 3.4842 -2.2654 -5.2901 18 6 3.2793 -1.0191 -5.7298 19 6 2.8021 -0.1377 -4.7853 20 9 2.5312 1.1595 -5.0483 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 2.2491 -1.6316 -1.1527 26 1 3.8511 -3.0768 -5.9011 27 1 3.4698 -0.7266 -6.7517 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307347740.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:46 Heat of formation + Delta-G solvation = -74.912391 kcal Electronic energy + Delta-G solvation = -14958.460723 eV Core-core repulsion = 12142.587256 eV Total energy + Delta-G solvation = -2815.873467 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 243.047 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.96344 -40.64752 -38.31314 -36.75048 -34.42139 -31.79135 -30.02859 -27.38313 -26.00618 -23.64672 -21.75466 -20.86552 -20.04016 -18.45086 -17.78264 -17.13301 -16.96267 -16.77992 -15.89649 -15.72359 -15.37166 -14.93378 -14.66598 -14.45884 -13.82365 -13.47617 -13.13405 -12.92466 -12.87031 -12.72076 -12.31863 -12.12049 -12.09876 -11.15108 -11.08729 -10.63903 -10.15297 -9.77538 -9.48672 -8.19393 -6.37889 -0.67400 0.29344 0.79327 1.18269 1.45613 1.46075 1.58884 2.10047 2.27030 2.49978 3.11382 3.28085 3.79171 3.98590 4.40090 4.67379 4.74969 4.86000 4.88008 5.03340 5.23282 5.36053 5.51948 5.61469 5.82950 6.03823 6.67002 6.77512 7.23455 7.39133 8.87704 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.038063 B = 0.006197 C = 0.005563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.439993 B = 4517.037872 C = 5032.184358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.000 1.000 4 C -0.548 4.548 5 H 0.077 0.923 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.977 3.023 9 H -0.257 1.257 10 H -0.284 1.284 11 H -0.277 1.277 12 N -0.696 5.696 13 C 0.569 3.431 14 O -0.591 6.591 15 C -0.356 4.356 16 S 0.311 5.689 17 C -0.182 4.182 18 C -0.187 4.187 19 C 0.137 3.863 20 F -0.130 7.130 21 H 0.071 0.929 22 H 0.044 0.956 23 H 0.009 0.991 24 H 0.266 0.734 25 H 0.402 0.598 26 H 0.229 0.771 27 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 -12.200 -14.447 19.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.166 3.834 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.095 0.905 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.801 3.199 9 H -0.180 1.180 10 H -0.210 1.210 11 H -0.203 1.203 12 N -0.344 5.344 13 C 0.357 3.643 14 O -0.474 6.474 15 C -0.477 4.477 16 S 0.577 5.423 17 C -0.320 4.320 18 C -0.217 4.217 19 C 0.101 3.899 20 F -0.109 7.109 21 H 0.090 0.910 22 H 0.063 0.937 23 H 0.028 0.972 24 H 0.076 0.924 25 H 0.238 0.762 26 H 0.245 0.755 27 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 5.708 -12.417 -13.276 19.053 hybrid contribution -0.047 1.493 -0.160 1.503 sum 5.662 -10.924 -13.436 18.219 Atomic orbital electron populations 1.21913 0.97979 0.99758 0.99654 1.18467 0.91411 0.92022 0.81484 0.98257 1.21534 1.32870 1.13726 0.90468 0.90515 1.25852 0.94744 0.95560 1.02453 1.70065 1.36904 1.23927 1.24711 0.85217 0.78122 0.78520 0.77995 1.18010 1.21020 1.20295 1.46140 1.65061 1.13806 1.09415 1.17365 0.77807 0.86077 0.83081 1.90790 1.53580 1.17445 1.85591 1.24778 1.21493 1.03796 0.97653 1.82934 1.56223 0.98457 1.04730 1.25717 1.03718 1.01791 1.00738 1.19985 1.06952 0.92623 1.02170 1.17624 0.99708 0.79872 0.92720 1.91495 1.91077 1.34172 1.94106 0.91048 0.93654 0.97215 0.92433 0.76250 0.75458 0.79801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.06 9.26 71.98 0.67 -6.39 15 2 C 0.27 14.56 2.56 44.24 0.11 14.67 15 3 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 15 4 C -0.55 -29.36 8.73 25.60 0.22 -29.13 15 5 H 0.08 3.80 7.74 -2.91 -0.02 3.77 15 6 C 0.01 0.76 5.30 84.66 0.45 1.21 15 7 N -0.92 -53.18 11.32 21.45 0.24 -52.94 15 8 Si 0.98 41.82 29.54 68.60 2.03 43.84 15 9 H -0.26 -10.24 7.11 99.48 0.71 -9.53 15 10 H -0.28 -12.17 7.11 99.48 0.71 -11.47 15 11 H -0.28 -11.58 7.11 99.48 0.71 -10.87 15 12 N -0.70 -31.10 5.06 -450.44 -2.28 -33.38 15 13 C 0.57 25.92 7.74 86.33 0.67 26.58 15 14 O -0.59 -32.81 15.80 -4.47 -0.07 -32.88 15 15 C -0.36 -12.03 6.45 24.05 0.16 -11.88 15 16 S 0.31 6.14 22.14 -56.49 -1.25 4.89 15 17 C -0.18 -2.46 10.91 66.80 0.73 -1.73 15 18 C -0.19 -3.61 10.15 21.12 0.21 -3.39 15 19 C 0.14 4.28 7.47 21.84 0.16 4.44 15 20 F -0.13 -4.92 16.42 44.97 0.74 -4.19 15 21 H 0.07 4.05 6.07 -2.39 -0.01 4.04 15 22 H 0.04 2.16 8.14 -2.39 -0.02 2.14 15 23 H 0.01 0.47 8.14 -2.38 -0.02 0.45 15 24 H 0.27 14.51 8.31 -92.71 -0.77 13.74 15 25 H 0.40 14.93 7.64 -92.71 -0.71 14.23 15 26 H 0.23 0.81 8.06 -2.91 -0.02 0.79 15 27 H 0.18 2.41 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -73.94 259.92 3.29 -70.65 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.50 Total: 9.61 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 3.38 Total: -5.62 kcal Atomic # 7 Polarization: -84.28 SS G_CDS: -2.04 Total: -86.32 kcal Atomic # 8 Polarization: -32.81 SS G_CDS: -0.07 Total: -32.88 kcal Atomic # 9 Polarization: -4.92 SS G_CDS: 0.74 Total: -4.19 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 6.14 SS G_CDS: -1.25 Total: 4.89 kcal Total: -73.94 3.29 -70.65 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307347740.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.262 kcal (2) G-P(sol) polarization free energy of solvation -73.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds