Wall clock time and date at job start Mon Mar 30 2020 04:37:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31433 * 1 3 3 Si 1.86800 * 119.99899 * 2 1 4 4 H 1.48505 * 109.46819 * 239.99757 * 3 2 1 5 5 H 1.48494 * 109.47285 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47086 * 120.00053 * 3 2 1 7 7 C 1.38790 * 120.00179 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00217 * 179.97438 * 7 2 1 9 9 O 1.34864 * 119.99779 * 0.02562 * 7 2 1 10 10 C 1.34787 * 116.99938 * 179.97438 * 9 7 2 11 11 O 1.21549 * 119.99756 * 0.02562 * 10 9 7 12 12 C 1.47323 * 119.99823 * 180.02562 * 10 9 7 13 13 C 1.39882 * 120.06782 * 359.71945 * 12 10 9 14 14 C 1.37801 * 119.93579 * 179.76519 * 13 12 10 15 15 F 1.35099 * 119.97072 * 180.25539 * 14 13 12 16 16 C 1.39338 * 120.06340 * 0.51660 * 14 13 12 17 17 N 1.39316 * 119.93331 * 179.71680 * 16 14 13 18 18 C 1.39329 * 120.13146 * 359.74115 * 16 14 13 19 19 F 1.35101 * 119.96844 * 179.97438 * 18 16 14 20 20 C 1.37803 * 120.06911 * 359.97438 * 18 16 14 21 21 H 0.96996 * 119.99762 * 0.02562 * 1 2 3 22 22 H 1.07996 * 120.03646 * 0.02562 * 13 12 10 23 23 H 0.97002 * 119.99893 * 180.02562 * 17 16 14 24 24 H 0.96991 * 119.99962 * 0.02562 * 17 16 14 25 25 H 1.07997 * 120.03456 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2483 1.6178 0.0000 4 1 3.1021 1.6963 -1.2125 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6964 1.2125 7 6 2.0083 -1.2019 0.0005 8 1 3.0883 -1.2019 0.0001 9 8 1.3340 -2.3699 0.0005 10 6 2.0681 -3.5003 0.0005 11 8 3.2819 -3.4366 0.0010 12 6 1.3992 -4.8129 0.0000 13 6 0.0024 -4.8878 0.0054 14 6 -0.6204 -6.1170 -0.0001 15 9 -1.9694 -6.1901 -0.0001 16 6 0.1398 -7.2847 -0.0001 17 7 -0.4927 -8.5260 0.0004 18 6 1.5313 -7.2134 0.0000 19 9 2.2652 -8.3477 0.0005 20 6 2.1598 -5.9870 -0.0005 21 1 -0.4849 0.8400 -0.0004 22 1 -0.5874 -3.9831 0.0095 23 1 0.0356 -9.3395 0.0008 24 1 -1.4613 -8.5767 0.0003 25 1 3.2384 -5.9324 0.0000 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308979758.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:37:24 Heat of formation + Delta-G solvation = -165.572296 kcal Electronic energy + Delta-G solvation = -16651.958706 eV Core-core repulsion = 13265.940755 eV Total energy + Delta-G solvation = -3386.017951 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 243.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.01075 -49.98975 -41.24143 -39.68979 -37.29054 -35.84617 -34.31160 -31.50208 -30.43694 -27.55259 -24.92626 -24.16480 -22.14146 -19.96329 -19.62297 -18.96589 -18.35343 -17.79435 -17.19983 -16.71143 -16.59848 -16.48557 -16.33425 -16.32871 -16.12247 -15.75801 -14.64157 -13.82451 -13.65898 -13.59466 -13.29605 -13.18139 -12.96327 -12.44131 -12.15625 -12.03800 -11.93203 -11.19985 -10.69881 -9.97553 -8.82083 -8.55462 -6.32028 -0.41727 -0.13973 1.36411 1.36456 1.52352 1.62643 2.07184 2.37951 2.46492 2.60238 2.81652 3.02513 3.25519 3.45864 3.97293 4.09453 4.42010 4.51258 4.76339 4.91673 5.13302 5.24414 5.44952 5.80869 6.07504 6.59691 6.61474 6.89102 7.71406 8.64653 Molecular weight = 243.05amu Principal moments of inertia in cm(-1) A = 0.039032 B = 0.005972 C = 0.005189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.193988 B = 4687.031851 C = 5394.382670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.002 4.002 3 Si 1.019 2.981 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.420 4.420 8 H 0.086 0.914 9 O -0.230 6.230 10 C 0.441 3.559 11 O -0.578 6.578 12 C -0.125 4.125 13 C -0.057 4.057 14 C 0.031 3.969 15 F -0.129 7.129 16 C 0.206 3.794 17 N -0.838 5.838 18 C 0.035 3.965 19 F -0.125 7.125 20 C -0.049 4.049 21 H 0.281 0.719 22 H 0.142 0.858 23 H 0.420 0.580 24 H 0.419 0.581 25 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.858 -14.557 0.005 14.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.203 4.203 3 Si 0.837 3.163 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.185 1.185 7 C -0.495 4.495 8 H 0.103 0.897 9 O -0.138 6.138 10 C 0.291 3.709 11 O -0.478 6.478 12 C -0.129 4.129 13 C -0.077 4.077 14 C 0.007 3.993 15 F -0.107 7.107 16 C 0.094 3.906 17 N -0.378 5.378 18 C 0.010 3.990 19 F -0.103 7.103 20 C -0.069 4.069 21 H 0.090 0.910 22 H 0.160 0.840 23 H 0.252 0.748 24 H 0.251 0.749 25 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -2.800 -14.452 0.006 14.721 hybrid contribution 0.123 0.349 0.000 0.370 sum -2.677 -14.103 0.006 14.355 Atomic orbital electron populations 1.70052 1.07635 1.29663 1.45946 1.26559 0.96907 1.02267 0.94531 0.84671 0.77617 0.74148 0.79858 1.18545 1.18368 1.18533 1.21490 0.92450 0.80910 1.54675 0.89657 1.83914 1.39783 1.13889 1.76214 1.21265 0.85750 0.86136 0.77792 1.90599 1.16169 1.88387 1.52653 1.18326 0.92677 0.89850 1.12023 1.21261 0.93868 0.97699 0.94915 1.16331 0.77297 0.91578 1.14137 1.91484 1.27545 1.96841 1.94867 1.17608 0.90084 0.87420 0.95447 1.42188 1.10914 1.03332 1.81378 1.16152 0.86388 0.82200 1.14228 1.91491 1.76351 1.47616 1.94888 1.20967 1.01754 0.88859 0.95293 0.90995 0.83992 0.74827 0.74938 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -52.25 13.67 21.63 0.30 -51.96 15 2 C 0.00 -0.09 5.50 84.88 0.47 0.38 15 3 Si 1.02 42.94 29.55 68.60 2.03 44.97 15 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 5 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 6 H -0.26 -10.59 7.11 99.48 0.71 -9.89 15 7 C -0.42 -25.44 9.65 67.95 0.66 -24.78 15 8 H 0.09 5.21 6.86 -2.91 -0.02 5.19 15 9 O -0.23 -13.62 8.98 10.68 0.10 -13.52 15 10 C 0.44 22.97 7.82 70.21 0.55 23.52 15 11 O -0.58 -32.33 15.58 19.68 0.31 -32.02 15 12 C -0.12 -5.01 5.88 -20.09 -0.12 -5.13 15 13 C -0.06 -2.07 9.58 22.56 0.22 -1.85 15 14 C 0.03 0.89 7.30 22.43 0.16 1.06 15 15 F -0.13 -3.49 16.62 44.97 0.75 -2.75 15 16 C 0.21 4.99 6.77 38.48 0.26 5.25 15 17 N -0.84 -13.12 9.06 -51.07 -0.46 -13.58 15 18 C 0.03 0.93 7.30 22.43 0.16 1.09 15 19 F -0.12 -2.97 16.62 44.97 0.75 -2.22 15 20 C -0.05 -1.62 9.56 22.57 0.22 -1.40 15 21 H 0.28 14.83 8.31 -92.71 -0.77 14.06 15 22 H 0.14 5.65 7.60 -2.91 -0.02 5.63 15 23 H 0.42 4.87 8.29 -92.71 -0.77 4.10 15 24 H 0.42 5.18 8.29 -92.72 -0.77 4.41 15 25 H 0.15 5.02 7.64 -2.91 -0.02 5.00 15 Total: -1.00 -69.79 247.74 6.08 -63.71 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -0.25 Total: 9.23 kcal Atomic # 6 Polarization: -4.44 SS G_CDS: 2.57 Total: -1.87 kcal Atomic # 7 Polarization: -65.37 SS G_CDS: -0.17 Total: -65.54 kcal Atomic # 8 Polarization: -45.95 SS G_CDS: 0.40 Total: -45.54 kcal Atomic # 9 Polarization: -6.46 SS G_CDS: 1.49 Total: -4.96 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.79 6.08 -63.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308979758.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.861 kcal (2) G-P(sol) polarization free energy of solvation -69.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds