Wall clock time and date at job start Mon Mar 30 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 65.00226 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09005 * 110.30718 * 263.04287 * 8 7 6 10 10 N 1.46900 * 110.31220 * 140.87540 * 8 7 6 11 11 C 1.46897 * 110.99814 * 89.27941 * 10 8 7 12 12 C 1.53006 * 109.46777 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47124 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00134 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99846 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00183 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47063 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47429 * 209.99756 * 17 15 13 20 20 H 1.48497 * 109.46944 * 330.00311 * 17 15 13 21 21 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 22 22 H 1.09000 * 109.47382 * 59.99383 * 1 2 3 23 23 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46728 * 299.99310 * 1 2 3 25 25 H 1.08998 * 109.47230 * 60.00476 * 3 2 1 26 26 H 1.08998 * 109.47225 * 300.00441 * 3 2 1 27 27 H 1.09000 * 109.47560 * 304.99899 * 4 3 2 28 28 H 1.09011 * 109.47014 * 185.00001 * 4 3 2 29 29 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 30 30 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 31 31 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 32 32 H 1.08999 * 110.72531 * 81.04521 * 7 6 5 33 33 H 1.00896 * 111.00017 * 213.24011 * 10 8 7 34 34 H 1.08996 * 109.47610 * 299.99748 * 11 10 8 35 35 H 1.08995 * 109.47220 * 60.00734 * 11 10 8 36 36 H 1.09004 * 109.47224 * 299.99817 * 12 11 10 37 37 H 1.08998 * 109.47241 * 59.99903 * 12 11 10 38 38 H 0.97003 * 119.99981 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.91668 * 94.80258 * 21 5 4 40 40 H 1.09002 * 109.91761 * 333.70433 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.4169 1.2764 -2.4358 7 6 4.3652 0.8612 -3.5885 8 6 5.7487 0.8199 -2.9000 9 1 6.2846 1.7535 -3.0713 10 7 6.5327 -0.3180 -3.3986 11 6 7.3183 0.0615 -4.5804 12 6 8.1190 -1.1469 -5.0700 13 6 8.9254 -0.7575 -6.2820 14 1 8.8719 0.2509 -6.6651 15 6 9.7316 -1.6885 -6.9019 16 7 10.4350 -1.3487 -7.9599 17 14 9.8248 -3.4324 -6.2390 18 1 8.7835 -4.2663 -6.8914 19 1 11.1662 -4.0006 -6.5273 20 1 9.5987 -3.4168 -4.7714 21 6 5.4466 0.6446 -1.4002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5681 0.8409 28 1 3.9786 2.1765 0.0889 29 1 3.4491 2.3548 -2.2806 30 1 2.3974 0.9486 -2.6394 31 1 4.3528 1.6051 -4.3851 32 1 4.0966 -0.1224 -3.9737 33 1 7.1269 -0.6928 -2.6744 34 1 6.6468 0.3964 -5.3709 35 1 8.0021 0.8688 -4.3182 36 1 8.7906 -1.4822 -4.2796 37 1 7.4350 -1.9540 -5.3323 38 1 11.0019 -2.0038 -8.3963 39 1 5.9073 -0.2726 -1.0333 40 1 5.8273 1.5001 -0.8422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309045168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:22 Heat of formation + Delta-G solvation = -40.400986 kcal Electronic energy + Delta-G solvation = -17467.146911 eV Core-core repulsion = 14702.862256 eV Total energy + Delta-G solvation = -2764.284655 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.40068 -37.80884 -35.52753 -33.07076 -31.77027 -29.73178 -29.08633 -27.05081 -26.08897 -23.63681 -23.18635 -20.80216 -20.30438 -20.06309 -16.85311 -16.74409 -16.51008 -15.89062 -15.40243 -15.00169 -14.76285 -14.20368 -14.10166 -13.73709 -13.33159 -12.73283 -12.66092 -12.47781 -12.36595 -11.71175 -11.64795 -11.45588 -11.23838 -11.15701 -11.06697 -10.87750 -10.69137 -10.09971 -9.87595 -9.75852 -9.66157 -9.19343 -8.50711 -8.43748 -7.89191 -6.01713 -3.99947 3.36357 3.42864 3.48355 3.54258 3.88094 4.49484 4.54858 4.57231 4.76609 4.92289 4.93984 5.05635 5.11666 5.13920 5.20740 5.25408 5.33106 5.36598 5.45530 5.57234 5.66645 5.71856 5.83452 5.95253 6.07053 6.23029 6.28569 6.43961 6.80022 6.84443 6.86224 7.05920 7.20218 7.42699 7.66376 7.80245 7.95022 8.56049 9.02288 9.60917 11.11646 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046404 B = 0.003694 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.245755 B = 7579.063367 C = 7755.128134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.373 6.373 3 C 0.062 3.938 4 C 0.046 3.954 5 N -0.501 5.501 6 C 0.035 3.965 7 C -0.112 4.112 8 C 0.077 3.923 9 H 0.046 0.954 10 N -0.682 5.682 11 C 0.074 3.926 12 C -0.010 4.010 13 C -0.521 4.521 14 H 0.070 0.930 15 C 0.066 3.934 16 N -0.905 5.905 17 Si 0.883 3.117 18 H -0.276 1.276 19 H -0.289 1.289 20 H -0.265 1.265 21 C 0.036 3.964 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.036 0.964 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.038 0.962 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.089 0.911 33 H 0.336 0.664 34 H 0.063 0.937 35 H 0.020 0.980 36 H 0.013 0.987 37 H 0.021 0.979 38 H 0.263 0.737 39 H 0.085 0.915 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.541 6.722 17.158 25.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.291 6.291 3 C -0.015 4.015 4 C -0.082 4.082 5 N -0.226 5.226 6 C -0.093 4.093 7 C -0.151 4.151 8 C -0.034 4.034 9 H 0.064 0.936 10 N -0.314 5.314 11 C -0.055 4.055 12 C -0.048 4.048 13 C -0.559 4.559 14 H 0.088 0.912 15 C -0.135 4.135 16 N -0.544 5.544 17 Si 0.711 3.289 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.189 1.189 21 C -0.093 4.093 22 H 0.057 0.943 23 H 0.104 0.896 24 H 0.055 0.945 25 H 0.068 0.932 26 H 0.069 0.931 27 H 0.103 0.897 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.107 0.893 33 H 0.154 0.846 34 H 0.082 0.918 35 H 0.039 0.961 36 H 0.031 0.969 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.104 0.896 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -17.990 5.693 16.691 25.192 hybrid contribution 0.907 0.812 0.638 1.375 sum -17.083 6.505 17.329 25.188 Atomic orbital electron populations 1.22734 0.81654 1.02751 0.99524 1.88036 1.18917 1.26971 1.95215 1.22611 0.93499 0.85422 0.99967 1.22347 0.93501 0.97949 0.94399 1.64833 1.06074 1.50705 1.00962 1.23291 0.99606 0.95511 0.90848 1.22565 0.93292 1.02903 0.96347 1.22338 0.95289 0.93232 0.92551 0.93585 1.60723 1.30356 1.30623 1.09666 1.21998 0.94361 0.98272 0.90830 1.19545 0.94761 0.94027 0.96439 1.21079 1.24897 0.99108 1.10849 0.91182 1.25014 0.95026 0.98848 0.94595 1.69921 1.28841 1.35033 1.20622 0.86720 0.77151 0.84892 0.80169 1.20211 1.21554 1.18937 1.23109 0.88851 1.01184 0.96111 0.94276 0.89627 0.94518 0.93211 0.93129 0.89727 0.93401 0.94417 0.90144 0.91530 0.89260 0.84565 0.91801 0.96131 0.96874 0.96022 0.92754 0.89628 0.94050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.37 -4.18 10.65 -35.23 -0.38 -4.56 16 3 C 0.06 0.56 5.77 37.16 0.21 0.78 16 4 C 0.05 0.46 5.42 -3.82 -0.02 0.44 16 5 N -0.50 -6.21 5.35 -230.20 -1.23 -7.45 16 6 C 0.04 0.41 5.10 -1.74 -0.01 0.40 16 7 C -0.11 -1.53 6.76 -24.87 -0.17 -1.70 16 8 C 0.08 1.11 3.32 -66.36 -0.22 0.89 16 9 H 0.05 0.67 7.82 -51.93 -0.41 0.26 16 10 N -0.68 -11.79 6.29 -105.29 -0.66 -12.45 16 11 C 0.07 1.51 5.48 -3.82 -0.02 1.49 16 12 C -0.01 -0.24 4.30 -27.88 -0.12 -0.36 16 13 C -0.52 -15.15 9.66 -34.44 -0.33 -15.48 16 14 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 15 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 16 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 17 Si 0.88 22.28 27.47 -169.99 -4.67 17.61 16 18 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.26 -6.44 6.54 56.52 0.37 -6.07 16 21 C 0.04 0.45 6.39 -2.75 -0.02 0.43 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 23 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.43 6.54 -51.93 -0.34 0.09 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.41 7.81 -51.92 -0.41 0.00 16 29 H 0.04 0.39 8.01 -51.93 -0.42 -0.03 16 30 H 0.08 0.91 7.59 -51.92 -0.39 0.52 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.09 1.39 8.06 -51.93 -0.42 0.97 16 33 H 0.34 5.50 8.01 -39.29 -0.31 5.18 16 34 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.02 0.42 8.07 -51.93 -0.42 0.00 16 36 H 0.01 0.32 7.20 -51.93 -0.37 -0.06 16 37 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 38 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 39 H 0.09 1.11 7.47 -51.93 -0.39 0.72 16 40 H 0.04 0.46 7.57 -51.93 -0.39 0.06 16 LS Contribution 318.16 15.07 4.79 4.79 Total: -1.00 -32.09 318.16 -8.26 -40.34 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -7.21 Total: -0.82 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 0.32 Total: -9.91 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: -1.12 Total: -47.46 kcal Atomic # 8 Polarization: -4.18 SS G_CDS: -0.38 Total: -4.56 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.67 Total: 17.61 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.09 -8.26 -40.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309045168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.057 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds