Wall clock time and date at job start Mon Mar 30 2020 04:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42895 * 114.00106 * 2 1 4 4 C 1.53003 * 109.47007 * 180.02562 * 3 2 1 5 5 N 1.46897 * 109.47175 * 65.00226 * 4 3 2 6 6 C 1.48813 * 111.18681 * 52.66416 * 5 4 3 7 7 C 1.54933 * 103.35205 * 159.50572 * 6 5 4 8 8 C 1.54594 * 102.91997 * 322.69117 * 7 6 5 9 9 H 1.09005 * 110.30718 * 263.04287 * 8 7 6 10 10 N 1.46900 * 110.31220 * 140.87540 * 8 7 6 11 11 C 1.46897 * 110.99814 * 89.27941 * 10 8 7 12 12 C 1.53006 * 109.46777 * 180.02562 * 11 10 8 13 13 C 1.50695 * 109.47124 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00134 * 359.97438 * 13 12 11 15 15 C 1.37878 * 120.00018 * 179.97438 * 13 12 11 16 16 N 1.31515 * 119.99846 * 179.97438 * 15 13 12 17 17 Si 1.86798 * 120.00183 * 359.97438 * 15 13 12 18 18 H 1.48502 * 109.47063 * 89.99861 * 17 15 13 19 19 H 1.48500 * 109.47429 * 209.99756 * 17 15 13 20 20 H 1.48497 * 109.46944 * 330.00311 * 17 15 13 21 21 C 1.47905 * 111.00050 * 169.99751 * 5 4 3 22 22 H 1.09000 * 109.47382 * 59.99383 * 1 2 3 23 23 H 1.09000 * 109.47320 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46728 * 299.99310 * 1 2 3 25 25 H 1.08998 * 109.47230 * 60.00476 * 3 2 1 26 26 H 1.08998 * 109.47225 * 300.00441 * 3 2 1 27 27 H 1.09000 * 109.47560 * 304.99899 * 4 3 2 28 28 H 1.09011 * 109.47014 * 185.00001 * 4 3 2 29 29 H 1.08998 * 110.51915 * 41.07024 * 6 5 4 30 30 H 1.09009 * 110.83927 * 278.09443 * 6 5 4 31 31 H 1.08999 * 110.72416 * 204.32980 * 7 6 5 32 32 H 1.08999 * 110.72531 * 81.04521 * 7 6 5 33 33 H 1.00896 * 111.00017 * 213.24011 * 10 8 7 34 34 H 1.08996 * 109.47610 * 299.99748 * 11 10 8 35 35 H 1.08995 * 109.47220 * 60.00734 * 11 10 8 36 36 H 1.09004 * 109.47224 * 299.99817 * 12 11 10 37 37 H 1.08998 * 109.47241 * 59.99903 * 12 11 10 38 38 H 0.97003 * 119.99981 * 180.02562 * 16 15 13 39 39 H 1.09002 * 109.91668 * 94.80258 * 21 5 4 40 40 H 1.09002 * 109.91761 * 333.70433 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9769 0.5627 -1.2562 6 6 3.4169 1.2764 -2.4358 7 6 4.3652 0.8612 -3.5885 8 6 5.7487 0.8199 -2.9000 9 1 6.2846 1.7535 -3.0713 10 7 6.5327 -0.3180 -3.3986 11 6 7.3183 0.0615 -4.5804 12 6 8.1190 -1.1469 -5.0700 13 6 8.9254 -0.7575 -6.2820 14 1 8.8719 0.2509 -6.6651 15 6 9.7316 -1.6885 -6.9019 16 7 10.4350 -1.3487 -7.9599 17 14 9.8248 -3.4324 -6.2390 18 1 8.7835 -4.2663 -6.8914 19 1 11.1662 -4.0006 -6.5273 20 1 9.5987 -3.4168 -4.7714 21 6 5.4466 0.6446 -1.4002 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 1.6887 1.8463 0.8900 26 1 1.6886 1.8464 -0.8899 27 1 3.8515 0.5681 0.8409 28 1 3.9786 2.1765 0.0889 29 1 3.4491 2.3548 -2.2806 30 1 2.3974 0.9486 -2.6394 31 1 4.3528 1.6051 -4.3851 32 1 4.0966 -0.1224 -3.9737 33 1 7.1269 -0.6928 -2.6744 34 1 6.6468 0.3964 -5.3709 35 1 8.0021 0.8688 -4.3182 36 1 8.7906 -1.4822 -4.2796 37 1 7.4350 -1.9540 -5.3323 38 1 11.0019 -2.0038 -8.3963 39 1 5.9073 -0.2726 -1.0333 40 1 5.8273 1.5001 -0.8422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309045168.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:27:22 Heat of formation + Delta-G solvation = -65.381335 kcal Electronic energy + Delta-G solvation = -17468.230140 eV Core-core repulsion = 14702.862256 eV Total energy + Delta-G solvation = -2765.367884 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.35271 -38.61637 -36.92841 -34.97808 -33.17580 -31.27992 -30.00898 -28.22562 -26.87228 -25.42763 -24.03567 -22.27349 -21.51813 -21.26093 -18.96475 -17.53539 -17.28888 -16.95652 -16.58223 -16.27262 -15.99383 -15.64427 -15.15397 -14.90296 -14.77775 -14.57360 -13.84942 -13.51944 -13.35958 -13.16365 -12.91360 -12.66020 -12.39147 -12.30318 -12.17984 -12.05625 -11.80350 -11.75486 -11.62093 -11.47151 -11.40311 -10.77160 -10.52864 -9.38504 -9.22156 -8.30300 -6.34834 1.38335 1.38983 1.52079 2.36998 2.88214 3.05136 3.05460 3.28717 3.58526 3.85098 4.12288 4.21359 4.26459 4.31654 4.41830 4.44618 4.50949 4.53161 4.58031 4.59358 4.64340 4.73358 4.85236 4.90036 4.93150 4.95394 4.97916 5.04243 5.27378 5.35223 5.49309 5.63216 5.89906 6.08135 6.19927 6.27168 6.37738 6.55170 6.73950 7.30227 8.86395 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.046404 B = 0.003694 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.245755 B = 7579.063367 C = 7755.128134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.405 6.405 3 C 0.061 3.939 4 C 0.045 3.955 5 N -0.521 5.521 6 C 0.045 3.955 7 C -0.114 4.114 8 C 0.074 3.926 9 H 0.048 0.952 10 N -0.684 5.684 11 C 0.089 3.911 12 C -0.004 4.004 13 C -0.534 4.534 14 H 0.032 0.968 15 C 0.005 3.995 16 N -0.951 5.951 17 Si 0.955 3.045 18 H -0.269 1.269 19 H -0.283 1.283 20 H -0.247 1.247 21 C 0.043 3.957 22 H 0.045 0.955 23 H 0.088 0.912 24 H 0.052 0.948 25 H 0.071 0.929 26 H 0.055 0.945 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.343 0.657 34 H 0.053 0.947 35 H 0.017 0.983 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.079 0.921 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 6.458 19.250 27.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.325 6.325 3 C -0.016 4.016 4 C -0.083 4.083 5 N -0.246 5.246 6 C -0.082 4.082 7 C -0.153 4.153 8 C -0.037 4.037 9 H 0.066 0.934 10 N -0.316 5.316 11 C -0.040 4.040 12 C -0.042 4.042 13 C -0.573 4.573 14 H 0.050 0.950 15 C -0.192 4.192 16 N -0.592 5.592 17 Si 0.778 3.222 18 H -0.194 1.194 19 H -0.209 1.209 20 H -0.170 1.170 21 C -0.086 4.086 22 H 0.063 0.937 23 H 0.106 0.894 24 H 0.070 0.930 25 H 0.089 0.911 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.162 0.838 34 H 0.072 0.928 35 H 0.035 0.965 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.138 5.446 18.806 27.379 hybrid contribution 1.220 0.981 -0.038 1.566 sum -17.918 6.426 18.769 26.733 Atomic orbital electron populations 1.22867 0.80232 1.03361 1.00569 1.87984 1.20660 1.28363 1.95464 1.22700 0.92791 0.84924 1.01178 1.22421 0.94302 0.98596 0.92959 1.64805 1.05797 1.51911 1.02133 1.23206 0.98926 0.96462 0.89640 1.22535 0.93522 1.01867 0.97338 1.22429 0.95003 0.92090 0.94142 0.93411 1.60637 1.29814 1.32071 1.09099 1.21644 0.93950 0.96361 0.92033 1.19432 0.94590 0.95470 0.94689 1.21414 1.25682 0.97660 1.12494 0.94984 1.26005 0.94509 1.03879 0.94780 1.70065 1.29935 1.36910 1.22262 0.85588 0.77514 0.78693 0.80390 1.19378 1.20852 1.17027 1.23004 0.89339 1.01703 0.94508 0.93667 0.89365 0.92975 0.91140 0.92674 0.90100 0.91592 0.92574 0.90002 0.91128 0.91521 0.83826 0.92816 0.96467 0.96162 0.96206 0.92413 0.90235 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -8.39 10.65 -148.98 -1.59 -9.98 16 3 C 0.06 0.95 5.77 71.98 0.42 1.36 16 4 C 0.05 0.78 5.42 86.30 0.47 1.25 16 5 N -0.52 -11.84 5.35 -882.21 -4.72 -16.57 16 6 C 0.05 0.96 5.10 86.59 0.44 1.40 16 7 C -0.11 -2.98 6.76 31.80 0.22 -2.77 16 8 C 0.07 2.02 3.32 45.79 0.15 2.17 16 9 H 0.05 1.31 7.82 -2.38 -0.02 1.29 16 10 N -0.68 -22.89 6.29 -487.04 -3.06 -25.96 16 11 C 0.09 3.64 5.48 86.31 0.47 4.11 16 12 C 0.00 -0.19 4.30 29.85 0.13 -0.07 16 13 C -0.53 -31.63 9.66 25.60 0.25 -31.38 16 14 H 0.03 2.07 7.99 -2.91 -0.02 2.05 16 15 C 0.01 0.30 5.47 84.65 0.46 0.77 16 16 N -0.95 -60.68 13.96 21.45 0.30 -60.38 16 17 Si 0.95 45.55 27.47 68.60 1.88 47.43 16 18 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 20 H -0.25 -10.97 6.54 99.48 0.65 -10.32 16 21 C 0.04 0.98 6.39 86.44 0.55 1.53 16 22 H 0.04 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 24 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 25 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.06 0.79 6.54 -2.39 -0.02 0.78 16 27 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.07 0.90 7.81 -2.38 -0.02 0.88 16 29 H 0.06 0.99 8.01 -2.39 -0.02 0.97 16 30 H 0.08 1.71 7.59 -2.38 -0.02 1.69 16 31 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.07 2.05 8.06 -2.39 -0.02 2.03 16 33 H 0.34 10.67 8.01 -89.70 -0.72 9.95 16 34 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 0.71 8.07 -2.39 -0.02 0.69 16 36 H 0.02 0.95 7.20 -2.39 -0.02 0.93 16 37 H 0.02 0.96 7.57 -2.39 -0.02 0.94 16 38 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 39 H 0.08 1.92 7.47 -2.39 -0.02 1.90 16 40 H 0.06 1.15 7.57 -2.39 -0.02 1.13 16 Total: -1.00 -69.10 318.16 -2.17 -71.27 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.22 Total: 14.20 kcal Atomic # 6 Polarization: -24.82 SS G_CDS: 4.80 Total: -20.02 kcal Atomic # 7 Polarization: -95.42 SS G_CDS: -7.49 Total: -102.90 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: -1.59 Total: -9.98 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 1.88 Total: 47.43 kcal Total: -69.10 -2.17 -71.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309045168.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.885 kcal (2) G-P(sol) polarization free energy of solvation -69.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds