Wall clock time and date at job start Mon Mar 30 2020 04:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46903 * 110.99830 * 2 1 4 4 C 1.53001 * 109.46730 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47180 * 304.99692 * 4 3 2 6 6 O 1.42894 * 109.47395 * 64.99936 * 4 3 2 7 7 C 1.53003 * 109.47005 * 185.00082 * 4 3 2 8 8 C 1.52999 * 109.47304 * 174.99577 * 7 4 3 9 9 N 1.46897 * 109.46881 * 179.97438 * 8 7 4 10 10 C 1.46907 * 110.99690 * 190.00439 * 9 8 7 11 11 C 1.50702 * 109.47169 * 161.83523 * 10 9 8 12 12 H 1.08000 * 119.99673 * 354.36910 * 11 10 9 13 13 C 1.37870 * 120.00007 * 174.36197 * 11 10 9 14 14 N 1.31519 * 120.00381 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 120.00095 * 179.97438 * 13 11 10 16 16 H 1.48506 * 109.47075 * 60.00210 * 15 13 11 17 17 H 1.48500 * 109.47488 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47323 * 300.00285 * 15 13 11 19 19 C 1.46899 * 111.00329 * 66.05215 * 9 8 7 20 20 C 1.53004 * 117.49627 * 261.91191 * 19 9 8 21 21 C 1.52997 * 117.49916 * 193.24913 * 19 9 8 22 22 H 1.08998 * 109.46955 * 299.99610 * 1 2 3 23 23 H 1.09004 * 109.46972 * 180.02562 * 1 2 3 24 24 H 1.08995 * 109.47075 * 60.00070 * 1 2 3 25 25 H 1.00898 * 110.99805 * 236.04927 * 2 1 3 26 26 H 1.08998 * 109.47289 * 300.00043 * 3 2 1 27 27 H 1.09001 * 109.47107 * 60.00200 * 3 2 1 28 28 H 0.96698 * 114.00270 * 60.00142 * 6 4 3 29 29 H 1.09001 * 109.46767 * 294.99968 * 7 4 3 30 30 H 1.09003 * 109.46924 * 54.99652 * 7 4 3 31 31 H 1.08996 * 109.46951 * 300.00337 * 8 7 4 32 32 H 1.09007 * 109.46659 * 60.00459 * 8 7 4 33 33 H 1.09001 * 109.46692 * 281.83278 * 10 9 8 34 34 H 1.08999 * 109.47285 * 41.83069 * 10 9 8 35 35 H 0.96996 * 120.00361 * 180.02562 * 14 13 11 36 36 H 1.08999 * 115.55057 * 47.57409 * 19 9 8 37 37 H 1.08999 * 117.49964 * 359.97438 * 20 19 9 38 38 H 1.09000 * 117.49708 * 145.01835 * 20 19 9 39 39 H 1.09001 * 117.49531 * 214.97110 * 21 19 9 40 40 H 1.08998 * 117.50292 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5249 1.3306 -0.0006 5 1 3.8727 0.7316 0.8410 6 8 3.9854 0.7489 -1.2219 7 6 4.0731 2.7535 0.1251 8 6 5.5972 2.7037 0.2500 9 7 6.1235 4.0698 0.3701 10 6 7.5879 4.0819 0.2539 11 6 8.0551 5.4787 -0.0651 12 1 7.3334 6.2580 -0.2606 13 6 9.4038 5.7618 -0.1071 14 7 10.2827 4.8128 0.1308 15 14 9.9829 7.4930 -0.5031 16 1 9.4495 8.4376 0.5111 17 1 11.4672 7.5345 -0.4866 18 1 9.4923 7.8833 -1.8493 19 6 5.6901 4.6923 1.6281 20 6 4.4801 5.6272 1.5735 21 6 5.8845 6.2030 1.7724 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8899 25 1 1.8306 -0.5261 -0.7814 26 1 1.6459 1.8948 -0.8900 27 1 1.6460 1.8948 0.8900 28 1 3.7126 1.2309 -2.0146 29 1 3.7996 3.3277 -0.7601 30 1 3.6513 3.2284 1.0109 31 1 5.8706 2.1294 1.1351 32 1 6.0190 2.2288 -0.6360 33 1 8.0298 3.7573 1.1960 34 1 7.8948 3.4051 -0.5435 35 1 11.2315 5.0120 0.1016 36 1 5.8140 4.0813 2.5221 37 1 4.0060 5.7807 0.6041 38 1 3.8083 5.6314 2.4318 39 1 6.1358 6.5859 2.7616 40 1 6.3344 6.7350 0.9341 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379798632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:59 Heat of formation + Delta-G solvation = -48.406721 kcal Electronic energy + Delta-G solvation = -17857.984019 eV Core-core repulsion = 15093.352210 eV Total energy + Delta-G solvation = -2764.631810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.80343 -38.74058 -36.04762 -35.34085 -34.60664 -32.39775 -29.69131 -27.89619 -25.26828 -24.14809 -23.19871 -23.04257 -22.25377 -20.97126 -18.59884 -17.55042 -17.28031 -16.70728 -16.55674 -16.28749 -15.91201 -15.34305 -15.14601 -14.62983 -14.47067 -14.08467 -13.87131 -13.53368 -13.39608 -12.95145 -12.86868 -12.64855 -12.58596 -12.44013 -12.28613 -11.97631 -11.78753 -11.70614 -11.22410 -10.98572 -10.84962 -10.61206 -10.51550 -9.40211 -9.03623 -8.15105 -6.23421 1.41814 1.44921 1.52244 2.42053 2.98151 3.12726 3.17507 3.39576 3.60809 3.92492 4.10405 4.20881 4.27483 4.29987 4.30825 4.44459 4.52782 4.61356 4.66858 4.77649 4.80417 4.89104 4.92280 4.93745 5.03383 5.12423 5.19421 5.26484 5.33565 5.40829 5.50605 5.78956 6.02578 6.11379 6.42719 6.43352 6.66606 6.87574 6.91948 7.44504 8.95893 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038341 B = 0.004671 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.113851 B = 5992.584485 C = 6446.010912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.707 5.707 3 C 0.037 3.963 4 C 0.117 3.883 5 H 0.088 0.912 6 O -0.575 6.575 7 C -0.123 4.123 8 C 0.066 3.934 9 N -0.513 5.513 10 C 0.209 3.791 11 C -0.506 4.506 12 H 0.074 0.926 13 C -0.003 4.003 14 N -0.941 5.941 15 Si 0.965 3.035 16 H -0.265 1.265 17 H -0.288 1.288 18 H -0.268 1.268 19 C -0.001 4.001 20 C -0.139 4.139 21 C -0.175 4.175 22 H 0.065 0.935 23 H 0.075 0.925 24 H 0.027 0.973 25 H 0.348 0.652 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.384 0.616 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.010 0.990 32 H 0.056 0.944 33 H -0.040 1.040 34 H -0.005 1.005 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.096 0.904 38 H 0.114 0.886 39 H 0.091 0.909 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.994 -3.928 0.223 19.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.339 5.339 3 C -0.093 4.093 4 C 0.057 3.943 5 H 0.106 0.894 6 O -0.382 6.382 7 C -0.162 4.162 8 C -0.062 4.062 9 N -0.237 5.237 10 C 0.083 3.917 11 C -0.544 4.544 12 H 0.091 0.909 13 C -0.200 4.200 14 N -0.582 5.582 15 Si 0.789 3.211 16 H -0.190 1.190 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.110 4.110 20 C -0.177 4.177 21 C -0.212 4.212 22 H 0.084 0.916 23 H 0.094 0.906 24 H 0.045 0.955 25 H 0.166 0.834 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.075 0.925 33 H -0.022 1.022 34 H 0.013 0.987 35 H 0.070 0.930 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.132 0.868 39 H 0.109 0.891 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.699 -4.189 0.933 19.186 hybrid contribution 1.017 0.674 -0.687 1.400 sum -17.683 -3.515 0.246 18.031 Atomic orbital electron populations 1.22239 0.86793 1.02536 1.00670 1.60343 1.08642 1.14019 1.50906 1.22591 0.94510 0.90206 1.01959 1.21868 0.92210 0.92909 0.87313 0.89376 1.86570 1.79152 1.56059 1.16398 1.22069 0.93491 0.96943 1.03682 1.21967 0.96455 0.88843 0.98974 1.61886 1.11366 1.18007 1.32407 1.19365 0.82903 0.96616 0.92834 1.21526 0.91552 0.95660 1.45654 0.90852 1.25914 0.97028 1.01441 0.95589 1.70102 1.01804 1.34809 1.51502 0.85504 0.76749 0.79604 0.79205 1.18955 1.21327 1.19306 1.22175 1.04759 0.92863 0.91185 1.23078 0.90030 1.01256 1.03327 1.23111 1.00032 0.95415 1.02627 0.91628 0.90629 0.95481 0.83396 0.93831 0.89748 0.76692 0.90721 0.90078 0.97185 0.92545 1.02211 0.98708 0.92971 0.91722 0.88529 0.86772 0.89084 0.89053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.75 16 2 N -0.71 -13.07 6.86 -537.14 -3.68 -16.75 16 3 C 0.04 0.67 5.36 86.30 0.46 1.13 16 4 C 0.12 2.68 3.20 30.60 0.10 2.78 16 5 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 6 O -0.57 -13.87 12.39 -148.98 -1.85 -15.72 16 7 C -0.12 -3.24 4.71 30.59 0.14 -3.10 16 8 C 0.07 2.43 4.84 86.30 0.42 2.85 16 9 N -0.51 -22.27 4.58 -875.51 -4.01 -26.28 16 10 C 0.21 11.45 4.75 85.56 0.41 11.86 16 11 C -0.51 -28.57 7.82 25.60 0.20 -28.37 16 12 H 0.07 4.00 5.55 -2.91 -0.02 3.98 16 13 C 0.00 -0.16 5.46 84.65 0.46 0.31 16 14 N -0.94 -57.93 13.29 21.45 0.28 -57.65 16 15 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 16 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 17 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 19 C 0.00 -0.03 4.20 44.92 0.19 0.16 16 20 C -0.14 -4.10 9.31 30.62 0.29 -3.82 16 21 C -0.17 -6.51 9.41 30.62 0.29 -6.22 16 22 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.03 0.34 8.14 -2.39 -0.02 0.32 16 25 H 0.35 6.31 8.37 -89.70 -0.75 5.56 16 26 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.38 6.71 9.05 -74.06 -0.67 6.04 16 29 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.08 2.01 6.61 -2.39 -0.02 2.00 16 31 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 32 H 0.06 2.24 7.52 -2.38 -0.02 2.23 16 33 H -0.04 -2.43 8.02 -2.39 -0.02 -2.45 16 34 H -0.01 -0.31 7.76 -2.39 -0.02 -0.32 16 35 H 0.26 15.24 8.31 -92.71 -0.77 14.46 16 36 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 37 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 38 H 0.11 2.61 8.14 -2.39 -0.02 2.59 16 39 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 40 H 0.09 3.92 5.32 -2.39 -0.01 3.90 16 Total: -1.00 -66.63 321.94 -3.31 -69.94 By element: Atomic # 1 Polarization: 20.96 SS G_CDS: -0.40 Total: 20.55 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 4.32 Total: -20.67 kcal Atomic # 7 Polarization: -93.27 SS G_CDS: -7.41 Total: -100.68 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -1.85 Total: -15.72 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -66.63 -3.31 -69.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379798632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.538 kcal (2) G-P(sol) polarization free energy of solvation -66.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds