Wall clock time and date at job start Mon Mar 30 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99963 * 2 1 4 4 C 1.46904 * 110.99670 * 123.95357 * 2 1 3 5 5 C 1.52999 * 109.46600 * 169.99877 * 4 2 1 6 6 H 1.09003 * 109.47441 * 60.00177 * 5 4 2 7 7 O 1.42898 * 109.47412 * 299.99954 * 5 4 2 8 8 C 1.53001 * 109.47061 * 179.97438 * 5 4 2 9 9 N 1.46894 * 109.47547 * 184.99964 * 8 5 4 10 10 C 1.46900 * 111.00163 * 190.00185 * 9 8 5 11 11 C 1.50707 * 109.47150 * 159.86906 * 10 9 8 12 12 H 1.08006 * 119.99609 * 354.19547 * 11 10 9 13 13 C 1.37868 * 120.00041 * 174.19901 * 11 10 9 14 14 N 1.31520 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00205 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47179 * 89.99937 * 15 13 11 17 17 H 1.48500 * 109.47350 * 209.99858 * 15 13 11 18 18 H 1.48501 * 109.46936 * 330.00187 * 15 13 11 19 19 C 1.46903 * 111.00143 * 66.04679 * 9 8 5 20 20 C 1.52998 * 117.49824 * 262.02142 * 19 9 8 21 21 C 1.52992 * 117.50046 * 193.35939 * 19 9 8 22 22 H 1.09003 * 109.46757 * 296.04765 * 1 2 3 23 23 H 1.09002 * 109.46697 * 56.04154 * 1 2 3 24 24 H 1.08996 * 109.47021 * 176.04909 * 1 2 3 25 25 H 1.09004 * 109.47000 * 183.94972 * 3 2 1 26 26 H 1.08995 * 109.47530 * 303.95455 * 3 2 1 27 27 H 1.09005 * 109.47322 * 63.95507 * 3 2 1 28 28 H 1.08999 * 109.47345 * 50.00260 * 4 2 1 29 29 H 1.08999 * 109.47405 * 289.99775 * 4 2 1 30 30 H 0.96705 * 114.00009 * 300.00516 * 7 5 4 31 31 H 1.09003 * 109.47133 * 64.99679 * 8 5 4 32 32 H 1.09002 * 109.47077 * 305.00294 * 8 5 4 33 33 H 1.09002 * 109.47314 * 279.86342 * 10 9 8 34 34 H 1.08999 * 109.47381 * 39.87044 * 10 9 8 35 35 H 0.97001 * 120.00164 * 179.97438 * 14 13 11 36 36 H 1.09002 * 115.54896 * 47.68479 * 19 9 8 37 37 H 1.08998 * 117.50081 * 359.97438 * 20 19 9 38 38 H 1.08999 * 117.50013 * 145.01548 * 20 19 9 39 39 H 1.09003 * 117.49686 * 214.97442 * 21 19 9 40 40 H 1.09003 * 117.50110 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 1 3.9910 0.0193 0.9323 7 8 3.7639 -1.6649 -0.2426 8 6 4.0529 -1.7526 2.1555 9 7 5.5164 -1.8320 2.0571 10 6 6.0592 -2.7821 3.0372 11 6 7.4377 -3.2141 2.6079 12 1 7.8301 -2.8966 1.6531 13 6 8.1977 -4.0146 3.4339 14 7 7.7199 -4.4009 4.5968 15 14 9.9061 -4.5507 2.9015 16 1 10.9043 -3.5529 3.3632 17 1 10.2176 -5.8747 3.4975 18 1 9.9545 -4.6506 1.4207 19 6 6.1274 -0.5055 2.2156 20 6 6.5135 0.2511 0.9430 21 6 7.6011 -0.3562 1.8327 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5741 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9164 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.5090 -1.7407 1.1757 29 1 1.7975 -0.2248 2.0629 30 1 3.3604 -2.5430 -0.2787 31 1 3.6328 -2.7584 2.1424 32 1 3.7776 -1.2561 3.0860 33 1 6.1166 -2.3029 4.0146 34 1 5.4076 -3.6538 3.0976 35 1 8.2545 -4.9644 5.1778 36 1 5.7646 0.0814 3.0595 37 1 6.3146 -0.2356 -0.0118 38 1 6.4052 1.3356 0.9498 39 1 8.2078 0.3293 2.4245 40 1 8.1175 -1.2423 1.4636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379803516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:46 Heat of formation + Delta-G solvation = -8.323934 kcal Electronic energy + Delta-G solvation = -18362.373443 eV Core-core repulsion = 15599.479753 eV Total energy + Delta-G solvation = -2762.893689 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.69992 -37.24683 -35.52309 -33.46038 -32.31340 -29.91209 -27.67006 -27.22556 -24.98850 -22.28549 -22.20054 -21.54292 -20.71239 -19.39764 -16.73658 -15.95552 -15.91837 -15.27480 -14.84591 -14.73097 -14.59751 -14.35446 -13.85286 -13.38428 -12.87954 -12.45938 -12.32709 -12.08408 -11.84770 -11.70592 -11.57022 -11.34399 -11.20397 -10.84458 -10.72528 -10.58931 -10.45380 -9.96998 -9.55778 -9.45800 -9.10258 -8.99576 -8.36512 -8.34916 -7.21155 -5.97764 -3.97230 3.34619 3.40917 3.45492 3.83961 4.44365 4.63799 4.71327 4.88178 5.05786 5.07771 5.26423 5.29178 5.37288 5.43677 5.54783 5.65013 5.65758 5.72003 5.72253 5.74461 5.83421 5.92206 6.08071 6.21534 6.26807 6.41339 6.50972 6.82167 6.94315 6.97523 7.10042 7.22846 7.40225 7.90082 8.12736 8.19787 8.28502 8.58989 9.09672 9.65526 11.12949 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038357 B = 0.005421 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.815574 B = 5164.056517 C = 5486.637562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.535 5.535 3 C 0.022 3.978 4 C 0.020 3.980 5 C 0.119 3.881 6 H 0.098 0.902 7 O -0.535 6.535 8 C 0.028 3.972 9 N -0.498 5.498 10 C 0.195 3.805 11 C -0.494 4.494 12 H 0.068 0.932 13 C 0.053 3.947 14 N -0.903 5.903 15 Si 0.894 3.106 16 H -0.282 1.282 17 H -0.288 1.288 18 H -0.272 1.272 19 C 0.023 3.977 20 C -0.183 4.183 21 C -0.155 4.155 22 H 0.021 0.979 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.076 0.924 29 H 0.038 0.962 30 H 0.366 0.634 31 H 0.071 0.929 32 H 0.025 0.975 33 H -0.004 1.004 34 H 0.023 0.977 35 H 0.260 0.740 36 H 0.064 0.936 37 H 0.099 0.901 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.404 9.345 -6.240 16.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.126 4.126 4 C -0.109 4.109 5 C 0.059 3.941 6 H 0.116 0.884 7 O -0.338 6.338 8 C -0.101 4.101 9 N -0.222 5.222 10 C 0.070 3.930 11 C -0.533 4.533 12 H 0.086 0.914 13 C -0.148 4.148 14 N -0.543 5.543 15 Si 0.722 3.278 16 H -0.208 1.208 17 H -0.214 1.214 18 H -0.197 1.197 19 C -0.087 4.087 20 C -0.221 4.221 21 C -0.192 4.192 22 H 0.039 0.961 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.094 0.906 29 H 0.056 0.944 30 H 0.212 0.788 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.014 0.986 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.750 9.366 -7.115 15.934 hybrid contribution 0.014 -0.137 1.838 1.843 sum -10.735 9.229 -5.278 15.109 Atomic orbital electron populations 1.22395 0.87820 1.02092 1.00108 1.61891 1.07071 1.13828 1.43057 1.22435 1.01689 0.88591 0.99887 1.22950 0.97922 0.98602 0.91424 1.21884 0.90784 0.96425 0.85039 0.88421 1.86588 1.77469 1.32474 1.37232 1.22718 0.91407 0.99924 0.96070 1.61836 1.01194 1.06081 1.53110 1.19729 0.95397 0.89409 0.88426 1.21227 0.99358 1.29223 1.03467 0.91379 1.24980 0.98357 0.96456 0.94972 1.69960 1.37574 1.36714 1.10058 0.86557 0.84494 0.77863 0.78903 1.20780 1.21397 1.19724 1.22051 0.98622 0.92079 0.95919 1.23077 1.05439 0.97340 0.96271 1.23104 0.91257 1.02801 1.02068 0.96073 0.91528 0.91470 0.90668 0.91617 0.96063 0.90572 0.94416 0.78847 0.91072 0.95669 0.98607 0.95941 0.93088 0.91815 0.88279 0.90591 0.90362 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.57 60.07 0.57 0.81 16 2 N -0.53 -6.47 4.89 -251.25 -1.23 -7.69 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.02 0.25 4.62 -3.82 -0.02 0.23 16 5 C 0.12 1.79 2.71 -26.73 -0.07 1.71 16 6 H 0.10 1.55 4.70 -51.93 -0.24 1.31 16 7 O -0.53 -8.72 13.15 -35.23 -0.46 -9.19 16 8 C 0.03 0.50 4.58 -3.83 -0.02 0.48 16 9 N -0.50 -10.68 4.52 -228.08 -1.03 -11.71 16 10 C 0.19 5.05 4.77 -4.97 -0.02 5.03 16 11 C -0.49 -13.70 7.82 -34.44 -0.27 -13.97 16 12 H 0.07 1.88 5.78 -52.48 -0.30 1.58 16 13 C 0.05 1.49 5.46 -17.82 -0.10 1.40 16 14 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 17 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.02 0.45 4.18 -67.72 -0.28 0.17 16 20 C -0.18 -3.19 9.16 -26.69 -0.24 -3.43 16 21 C -0.16 -3.06 9.48 -26.70 -0.25 -3.31 16 22 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 24 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 25 H 0.07 0.91 6.47 -51.93 -0.34 0.58 16 26 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.89 8.06 -51.93 -0.42 0.47 16 29 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 30 H 0.37 5.00 9.05 45.56 0.41 5.42 16 31 H 0.07 1.23 7.83 -51.93 -0.41 0.82 16 32 H 0.03 0.44 8.12 -51.93 -0.42 0.01 16 33 H 0.00 -0.11 7.99 -51.93 -0.42 -0.53 16 34 H 0.02 0.62 7.73 -51.93 -0.40 0.21 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 37 H 0.10 1.84 8.14 -51.93 -0.42 1.42 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 40 H 0.12 2.60 5.44 -51.93 -0.28 2.32 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -30.53 319.18 -8.51 -39.04 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -6.17 Total: 4.23 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -0.14 Total: -10.09 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -1.52 Total: -45.49 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: -0.46 Total: -9.19 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.53 -8.51 -39.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.721 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds