Wall clock time and date at job start Mon Mar 30 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46899 * 110.99963 * 2 1 4 4 C 1.46904 * 110.99670 * 123.95357 * 2 1 3 5 5 C 1.52999 * 109.46600 * 169.99877 * 4 2 1 6 6 H 1.09003 * 109.47441 * 60.00177 * 5 4 2 7 7 O 1.42898 * 109.47412 * 299.99954 * 5 4 2 8 8 C 1.53001 * 109.47061 * 179.97438 * 5 4 2 9 9 N 1.46894 * 109.47547 * 184.99964 * 8 5 4 10 10 C 1.46900 * 111.00163 * 190.00185 * 9 8 5 11 11 C 1.50707 * 109.47150 * 159.86906 * 10 9 8 12 12 H 1.08006 * 119.99609 * 354.19547 * 11 10 9 13 13 C 1.37868 * 120.00041 * 174.19901 * 11 10 9 14 14 N 1.31520 * 120.00209 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 120.00205 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47179 * 89.99937 * 15 13 11 17 17 H 1.48500 * 109.47350 * 209.99858 * 15 13 11 18 18 H 1.48501 * 109.46936 * 330.00187 * 15 13 11 19 19 C 1.46903 * 111.00143 * 66.04679 * 9 8 5 20 20 C 1.52998 * 117.49824 * 262.02142 * 19 9 8 21 21 C 1.52992 * 117.50046 * 193.35939 * 19 9 8 22 22 H 1.09003 * 109.46757 * 296.04765 * 1 2 3 23 23 H 1.09002 * 109.46697 * 56.04154 * 1 2 3 24 24 H 1.08996 * 109.47021 * 176.04909 * 1 2 3 25 25 H 1.09004 * 109.47000 * 183.94972 * 3 2 1 26 26 H 1.08995 * 109.47530 * 303.95455 * 3 2 1 27 27 H 1.09005 * 109.47322 * 63.95507 * 3 2 1 28 28 H 1.08999 * 109.47345 * 50.00260 * 4 2 1 29 29 H 1.08999 * 109.47405 * 289.99775 * 4 2 1 30 30 H 0.96705 * 114.00009 * 300.00516 * 7 5 4 31 31 H 1.09003 * 109.47133 * 64.99679 * 8 5 4 32 32 H 1.09002 * 109.47077 * 305.00294 * 8 5 4 33 33 H 1.09002 * 109.47314 * 279.86342 * 10 9 8 34 34 H 1.08999 * 109.47381 * 39.87044 * 10 9 8 35 35 H 0.97001 * 120.00164 * 179.97438 * 14 13 11 36 36 H 1.09002 * 115.54896 * 47.68479 * 19 9 8 37 37 H 1.08998 * 117.50081 * 359.97438 * 20 19 9 38 38 H 1.08999 * 117.50013 * 145.01548 * 20 19 9 39 39 H 1.09003 * 117.49686 * 214.97442 * 21 19 9 40 40 H 1.09003 * 117.50110 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1376 5 6 3.5044 -0.9554 0.9703 6 1 3.9910 0.0193 0.9323 7 8 3.7639 -1.6649 -0.2426 8 6 4.0529 -1.7526 2.1555 9 7 5.5164 -1.8320 2.0571 10 6 6.0592 -2.7821 3.0372 11 6 7.4377 -3.2141 2.6079 12 1 7.8301 -2.8966 1.6531 13 6 8.1977 -4.0146 3.4339 14 7 7.7199 -4.4009 4.5968 15 14 9.9061 -4.5507 2.9015 16 1 10.9043 -3.5529 3.3632 17 1 10.2176 -5.8747 3.4975 18 1 9.9545 -4.6506 1.4207 19 6 6.1274 -0.5055 2.2156 20 6 6.5135 0.2511 0.9430 21 6 7.6011 -0.3562 1.8327 22 1 -0.3633 0.4513 0.9233 23 1 -0.3633 0.5741 -0.8524 24 1 -0.3633 -1.0252 -0.0708 25 1 3.0829 1.3432 -0.0708 26 1 1.5899 1.9164 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.5090 -1.7407 1.1757 29 1 1.7975 -0.2248 2.0629 30 1 3.3604 -2.5430 -0.2787 31 1 3.6328 -2.7584 2.1424 32 1 3.7776 -1.2561 3.0860 33 1 6.1166 -2.3029 4.0146 34 1 5.4076 -3.6538 3.0976 35 1 8.2545 -4.9644 5.1778 36 1 5.7646 0.0814 3.0595 37 1 6.3146 -0.2356 -0.0118 38 1 6.4052 1.3356 0.9498 39 1 8.2078 0.3293 2.4245 40 1 8.1175 -1.2423 1.4636 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379803516.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:08:46 Heat of formation + Delta-G solvation = -32.139561 kcal Electronic energy + Delta-G solvation = -18363.406166 eV Core-core repulsion = 15599.479753 eV Total energy + Delta-G solvation = -2763.926413 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.01570 -38.55455 -36.68554 -35.29152 -34.19763 -31.29400 -28.96663 -28.46648 -26.43138 -24.15626 -23.43725 -23.03470 -21.83924 -21.03030 -18.65853 -17.33370 -17.09542 -16.70488 -16.33984 -16.03938 -15.97442 -15.70480 -15.12295 -14.86977 -14.39864 -13.99930 -13.82218 -13.25496 -13.17782 -12.92466 -12.81388 -12.65412 -12.57793 -12.53208 -12.43155 -12.31943 -11.82504 -11.68376 -11.24776 -11.03442 -10.80272 -10.56326 -10.50984 -9.23370 -8.95588 -8.14752 -6.21981 1.42122 1.42759 1.54310 2.42462 2.85117 3.08949 3.17431 3.30157 3.75090 3.87331 4.16155 4.19122 4.21691 4.31152 4.35234 4.45350 4.48897 4.56518 4.66244 4.72382 4.74185 4.78853 4.85992 4.92664 5.02521 5.04475 5.12511 5.19357 5.26354 5.38848 5.51277 5.78413 6.04046 6.12910 6.14123 6.43457 6.66966 6.92868 7.08569 7.45847 8.95800 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038357 B = 0.005421 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.815574 B = 5164.056517 C = 5486.637562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.022 3.978 4 C 0.029 3.971 5 C 0.133 3.867 6 H 0.093 0.907 7 O -0.551 6.551 8 C 0.027 3.973 9 N -0.505 5.505 10 C 0.210 3.790 11 C -0.502 4.502 12 H 0.067 0.933 13 C 0.001 3.999 14 N -0.939 5.939 15 Si 0.961 3.039 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.266 1.266 19 C 0.002 3.998 20 C -0.144 4.144 21 C -0.171 4.171 22 H 0.027 0.973 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.028 0.972 28 H 0.084 0.916 29 H 0.042 0.958 30 H 0.376 0.624 31 H 0.068 0.932 32 H 0.028 0.972 33 H -0.036 1.036 34 H -0.001 1.001 35 H 0.261 0.739 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.758 10.534 -7.409 17.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.275 5.275 3 C -0.126 4.126 4 C -0.100 4.100 5 C 0.073 3.927 6 H 0.110 0.890 7 O -0.356 6.356 8 C -0.102 4.102 9 N -0.229 5.229 10 C 0.084 3.916 11 C -0.540 4.540 12 H 0.085 0.915 13 C -0.196 4.196 14 N -0.581 5.581 15 Si 0.786 3.214 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.190 1.190 19 C -0.107 4.107 20 C -0.182 4.182 21 C -0.208 4.208 22 H 0.045 0.955 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.046 0.954 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.223 0.777 31 H 0.087 0.913 32 H 0.046 0.954 33 H -0.018 1.018 34 H 0.017 0.983 35 H 0.070 0.930 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.124 10.568 -8.305 17.447 hybrid contribution 0.063 -0.479 2.183 2.236 sum -11.061 10.090 -6.122 16.175 Atomic orbital electron populations 1.22440 0.86213 1.02762 1.00915 1.61871 1.08595 1.14316 1.42698 1.22447 1.00936 0.88389 1.00860 1.22775 0.95854 0.99415 0.91986 1.21704 0.92501 0.95246 0.83252 0.88955 1.86548 1.78031 1.33360 1.37649 1.22828 0.89131 1.00534 0.97690 1.61765 1.03444 1.06529 1.51171 1.19378 0.94733 0.89456 0.87996 1.21498 1.00188 1.29004 1.03352 0.91536 1.25825 1.02371 0.96493 0.94937 1.70087 1.39202 1.37529 1.11236 0.85502 0.79672 0.77500 0.78708 1.19928 1.21024 1.19026 1.22186 0.98829 0.91702 0.97945 1.23026 1.01965 0.98865 0.94301 1.23065 0.91450 1.02644 1.03638 0.95491 0.90390 0.90998 0.91949 0.90297 0.95388 0.89739 0.93968 0.77678 0.91315 0.95406 1.01837 0.98274 0.92977 0.91301 0.89300 0.87026 0.88740 0.89317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 9.57 127.69 1.22 1.63 16 2 N -0.55 -12.08 4.89 -948.82 -4.64 -16.72 16 3 C 0.02 0.43 9.32 127.69 1.19 1.62 16 4 C 0.03 0.66 4.62 86.30 0.40 1.06 16 5 C 0.13 3.84 2.71 30.59 0.08 3.92 16 6 H 0.09 2.78 4.70 -2.39 -0.01 2.77 16 7 O -0.55 -17.37 13.15 -148.98 -1.96 -19.33 16 8 C 0.03 0.96 4.58 86.30 0.40 1.35 16 9 N -0.51 -21.89 4.52 -875.52 -3.95 -25.84 16 10 C 0.21 11.26 4.77 85.56 0.41 11.67 16 11 C -0.50 -28.40 7.82 25.60 0.20 -28.20 16 12 H 0.07 3.73 5.78 -2.91 -0.02 3.72 16 13 C 0.00 0.04 5.46 84.65 0.46 0.51 16 14 N -0.94 -56.94 13.29 21.44 0.28 -56.65 16 15 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 16 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 17 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 18 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 19 C 0.00 0.09 4.18 44.91 0.19 0.28 16 20 C -0.14 -4.71 9.16 30.62 0.28 -4.43 16 21 C -0.17 -6.61 9.48 30.62 0.29 -6.32 16 22 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.08 1.13 8.12 -2.39 -0.02 1.11 16 24 H 0.07 1.13 8.12 -2.39 -0.02 1.11 16 25 H 0.06 1.39 6.47 -2.38 -0.02 1.38 16 26 H 0.08 1.34 8.12 -2.39 -0.02 1.32 16 27 H 0.03 0.51 8.14 -2.38 -0.02 0.49 16 28 H 0.08 1.81 8.06 -2.39 -0.02 1.79 16 29 H 0.04 0.95 8.12 -2.39 -0.02 0.93 16 30 H 0.38 9.94 9.05 -74.05 -0.67 9.27 16 31 H 0.07 2.40 7.83 -2.39 -0.02 2.38 16 32 H 0.03 0.96 8.12 -2.39 -0.02 0.94 16 33 H -0.04 -2.13 7.99 -2.39 -0.02 -2.15 16 34 H 0.00 -0.04 7.73 -2.39 -0.02 -0.06 16 35 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 36 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 37 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 39 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.09 3.97 5.44 -2.39 -0.01 3.95 16 Total: -1.00 -65.66 319.18 -2.78 -68.44 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.34 Total: 20.14 kcal Atomic # 6 Polarization: -22.01 SS G_CDS: 5.12 Total: -16.89 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -8.30 Total: -99.22 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.96 Total: -19.33 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -65.66 -2.78 -68.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379803516.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.301 kcal (2) G-P(sol) polarization free energy of solvation -65.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds