Wall clock time and date at job start Mon Mar 30 2020 04:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 111.00182 * 2 1 4 4 C 1.52999 * 109.46877 * 199.78519 * 3 2 1 5 5 O 1.42905 * 109.47288 * 64.42757 * 4 3 2 6 6 C 1.42899 * 114.00222 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47108 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99967 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99982 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47496 * 60.00173 * 11 9 7 13 13 H 1.48498 * 109.47166 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47216 * 300.00218 * 11 9 7 15 15 C 1.46902 * 111.00208 * 123.95246 * 2 1 3 16 16 H 1.08996 * 109.47601 * 186.04826 * 15 2 1 17 17 C 1.52995 * 109.47119 * 66.04118 * 15 2 1 18 18 N 1.46903 * 109.46859 * 55.00239 * 17 15 2 19 19 C 1.53003 * 109.47011 * 306.04529 * 15 2 1 20 20 C 1.52996 * 117.51859 * 116.27792 * 19 15 2 21 21 C 1.52996 * 60.00085 * 107.48186 * 20 19 15 22 22 H 1.09007 * 109.46675 * 291.32203 * 1 2 3 23 23 H 1.09000 * 109.46567 * 51.31600 * 1 2 3 24 24 H 1.08996 * 109.47384 * 171.31636 * 1 2 3 25 25 H 1.09000 * 109.46686 * 319.78418 * 3 2 1 26 26 H 1.09000 * 109.47076 * 79.78671 * 3 2 1 27 27 H 1.09002 * 109.46978 * 184.42122 * 4 3 2 28 28 H 1.08996 * 109.47476 * 304.42791 * 4 3 2 29 29 H 1.09001 * 109.47023 * 300.00197 * 6 5 4 30 30 H 1.09003 * 109.46794 * 59.99848 * 6 5 4 31 31 H 0.96996 * 120.00437 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47624 * 175.00461 * 17 15 2 33 33 H 1.09000 * 109.47698 * 295.00654 * 17 15 2 34 34 H 1.00903 * 110.99885 * 56.04770 * 18 17 15 35 35 H 1.00906 * 110.99978 * 180.02562 * 18 17 15 36 36 H 1.09004 * 115.54969 * 330.58260 * 19 15 2 37 37 H 1.09001 * 117.50363 * 214.97090 * 20 19 15 38 38 H 1.09001 * 117.50042 * 359.97438 * 20 19 15 39 39 H 1.08994 * 117.50323 * 252.51206 * 21 20 19 40 40 H 1.09011 * 117.50020 * 107.48484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.4454 1.3611 -0.4883 5 8 3.4866 0.9280 -1.8495 6 6 4.8022 0.8829 -2.4056 7 6 4.7271 0.4150 -3.8362 8 1 3.7703 0.1765 -4.2768 9 6 5.8797 0.2926 -4.5829 10 7 7.0447 0.5836 -4.0465 11 14 5.7866 -0.2866 -6.3563 12 1 4.9490 0.6554 -7.1414 13 1 7.1537 -0.3336 -6.9342 14 1 5.1830 -1.6426 -6.4032 15 6 1.9955 -0.7659 1.1376 16 1 3.0797 -0.6611 1.1757 17 6 1.6314 -2.2425 0.9705 18 7 2.1141 -2.7214 -0.3317 19 6 1.3858 -0.2343 2.4363 20 6 0.4988 -1.1854 3.2421 21 6 1.8964 -0.8272 3.7510 22 1 -0.3633 0.3737 0.9574 23 1 -0.3632 0.6423 -0.8022 24 1 -0.3634 -1.0158 -0.1551 25 1 1.3931 1.9919 -0.6635 26 1 1.9556 1.7760 1.0114 27 1 3.8610 2.3660 -0.4141 28 1 4.0314 0.6791 0.1278 29 1 5.2456 1.8780 -2.3711 30 1 5.4167 0.1912 -1.8292 31 1 7.8557 0.4971 -4.5716 32 1 2.0966 -2.8239 1.7666 33 1 0.5488 -2.3579 1.0214 34 1 3.1063 -2.5660 -0.4291 35 1 1.8853 -3.6950 -0.4664 36 1 1.1168 0.8220 2.4314 37 1 -0.3538 -0.7549 3.7674 38 1 0.3490 -2.1901 2.8469 39 1 2.6664 -1.5963 3.6908 40 1 1.9635 -0.1609 4.6112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385175850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:15 Heat of formation + Delta-G solvation = -9.917681 kcal Electronic energy + Delta-G solvation = -18220.783318 eV Core-core repulsion = 15457.820519 eV Total energy + Delta-G solvation = -2762.962800 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.50053 -36.68746 -35.28675 -33.69404 -32.55678 -29.46016 -27.81555 -26.79015 -24.50979 -23.08667 -22.38880 -22.16788 -21.50175 -18.67660 -16.52731 -16.23105 -16.08460 -15.68050 -15.21039 -14.71353 -14.32090 -14.08780 -13.69275 -13.51797 -13.20283 -12.83332 -12.63095 -12.05511 -11.75188 -11.59546 -11.52845 -11.39775 -11.14068 -10.90820 -10.74714 -10.61422 -10.44933 -10.33088 -9.96460 -9.80533 -8.96156 -8.65722 -8.25038 -7.99109 -7.76406 -5.99774 -3.99690 3.40258 3.41921 3.47023 3.62106 4.17376 4.45626 4.52158 4.72166 4.80807 4.92805 5.01296 5.18352 5.34840 5.36695 5.45845 5.47796 5.51710 5.59413 5.66931 5.74212 5.84691 5.92246 5.94756 6.02049 6.07225 6.15219 6.24023 6.28277 6.42674 7.23792 7.35327 7.47324 7.56701 7.57597 7.78413 7.93170 8.30624 8.77892 9.16419 9.64762 11.12006 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.005033 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.909853 B = 5561.449087 C = 5736.594659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.494 5.494 3 C 0.055 3.945 4 C 0.072 3.928 5 O -0.374 6.374 6 C 0.196 3.804 7 C -0.505 4.505 8 H 0.066 0.934 9 C 0.055 3.945 10 N -0.903 5.903 11 Si 0.906 3.094 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.275 1.275 15 C 0.114 3.886 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.828 5.828 19 C -0.182 4.182 20 C -0.182 4.182 21 C -0.177 4.177 22 H 0.019 0.981 23 H 0.062 0.938 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.038 0.962 27 H 0.033 0.967 28 H 0.031 0.969 29 H -0.001 1.001 30 H 0.001 0.999 31 H 0.262 0.738 32 H 0.019 0.981 33 H 0.070 0.930 34 H 0.347 0.653 35 H 0.331 0.669 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.093 0.907 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.430 -3.332 14.892 19.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.215 5.215 3 C -0.073 4.073 4 C -0.006 4.006 5 O -0.294 6.294 6 C 0.121 3.879 7 C -0.544 4.544 8 H 0.084 0.916 9 C -0.146 4.146 10 N -0.543 5.543 11 Si 0.734 3.266 12 H -0.201 1.201 13 H -0.214 1.214 14 H -0.200 1.200 15 C 0.004 3.996 16 H 0.102 0.898 17 C -0.057 4.057 18 N -0.357 5.357 19 C -0.202 4.202 20 C -0.219 4.219 21 C -0.215 4.215 22 H 0.037 0.963 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.056 0.944 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.072 0.928 32 H 0.037 0.963 33 H 0.088 0.912 34 H 0.160 0.840 35 H 0.143 0.857 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.117 0.883 39 H 0.111 0.889 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -11.735 -3.055 13.960 18.491 hybrid contribution 0.721 -0.370 0.688 1.063 sum -11.014 -3.426 14.648 18.645 Atomic orbital electron populations 1.22341 0.88045 1.02216 0.99179 1.61989 1.06919 1.12594 1.40034 1.22218 0.96733 0.89843 0.98468 1.22176 0.94547 0.96907 0.87009 1.87972 1.31406 1.87585 1.22402 1.20126 0.79112 0.95024 0.93627 1.21043 0.93693 1.43936 0.95693 0.91551 1.24932 0.94991 0.95703 0.98952 1.69960 0.97819 1.49369 1.37122 0.86423 0.76823 0.79432 0.83935 1.20111 1.21353 1.20034 1.21342 0.99292 0.93295 0.85680 0.89840 1.21861 0.99956 0.93854 0.90003 1.58391 1.22419 1.23179 1.31736 1.23130 1.04519 0.99014 0.93561 1.23080 0.93980 1.00826 1.04001 1.22911 0.97475 1.03714 0.97354 0.96303 0.91932 0.91474 0.90446 0.94399 0.94846 0.95083 0.98326 0.98127 0.92824 0.96311 0.91165 0.83965 0.85700 0.87815 0.89289 0.88282 0.88861 0.89095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 8.96 60.06 0.54 0.94 16 2 N -0.49 -7.66 4.31 -234.88 -1.01 -8.68 16 3 C 0.06 0.87 5.25 -3.82 -0.02 0.85 16 4 C 0.07 1.40 6.13 37.16 0.23 1.63 16 5 O -0.37 -9.42 10.27 -35.23 -0.36 -9.78 16 6 C 0.20 5.54 5.69 36.01 0.20 5.75 16 7 C -0.51 -15.32 9.43 -34.44 -0.32 -15.65 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 11 Si 0.91 22.44 29.54 -169.99 -5.02 17.42 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.11 1.51 2.23 -67.71 -0.15 1.36 16 16 H 0.08 1.25 6.58 -51.93 -0.34 0.91 16 17 C 0.07 0.91 4.53 -3.83 -0.02 0.90 16 18 N -0.83 -11.74 9.35 -10.37 -0.10 -11.84 16 19 C -0.18 -1.99 3.87 -90.62 -0.35 -2.34 16 20 C -0.18 -1.68 9.50 -26.74 -0.25 -1.93 16 21 C -0.18 -1.68 10.00 -26.73 -0.27 -1.94 16 22 H 0.02 0.22 6.53 -51.92 -0.34 -0.12 16 23 H 0.06 0.85 7.86 -51.93 -0.41 0.44 16 24 H 0.07 0.89 6.81 -51.93 -0.35 0.54 16 25 H 0.08 1.24 7.75 -51.93 -0.40 0.84 16 26 H 0.04 0.51 6.32 -51.93 -0.33 0.18 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.03 0.59 6.68 -51.93 -0.35 0.25 16 29 H 0.00 -0.03 8.14 -51.93 -0.42 -0.45 16 30 H 0.00 0.03 8.14 -51.93 -0.42 -0.40 16 31 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 32 H 0.02 0.21 7.59 -51.93 -0.39 -0.19 16 33 H 0.07 0.82 5.64 -51.93 -0.29 0.53 16 34 H 0.35 5.34 8.99 -39.29 -0.35 4.99 16 35 H 0.33 3.92 9.08 -39.29 -0.36 3.57 16 36 H 0.10 1.17 6.37 -51.93 -0.33 0.84 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.89 5.80 -51.93 -0.30 0.59 16 39 H 0.09 0.88 7.98 -51.93 -0.41 0.46 16 40 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 LS Contribution 315.92 15.07 4.76 4.76 Total: -1.00 -32.24 315.92 -8.13 -40.36 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.62 Total: 3.52 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -0.51 Total: -8.91 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.37 Total: -47.38 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.36 Total: -9.78 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.24 -8.13 -40.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385175850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.446 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds