Wall clock time and date at job start Mon Mar 30 2020 04:24:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 111.00182 * 2 1 4 4 C 1.52999 * 109.46877 * 199.78519 * 3 2 1 5 5 O 1.42905 * 109.47288 * 64.42757 * 4 3 2 6 6 C 1.42899 * 114.00222 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47108 * 179.97438 * 6 5 4 8 8 H 1.07998 * 119.99909 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99967 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99982 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 119.99979 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47496 * 60.00173 * 11 9 7 13 13 H 1.48498 * 109.47166 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47216 * 300.00218 * 11 9 7 15 15 C 1.46902 * 111.00208 * 123.95246 * 2 1 3 16 16 H 1.08996 * 109.47601 * 186.04826 * 15 2 1 17 17 C 1.52995 * 109.47119 * 66.04118 * 15 2 1 18 18 N 1.46903 * 109.46859 * 55.00239 * 17 15 2 19 19 C 1.53003 * 109.47011 * 306.04529 * 15 2 1 20 20 C 1.52996 * 117.51859 * 116.27792 * 19 15 2 21 21 C 1.52996 * 60.00085 * 107.48186 * 20 19 15 22 22 H 1.09007 * 109.46675 * 291.32203 * 1 2 3 23 23 H 1.09000 * 109.46567 * 51.31600 * 1 2 3 24 24 H 1.08996 * 109.47384 * 171.31636 * 1 2 3 25 25 H 1.09000 * 109.46686 * 319.78418 * 3 2 1 26 26 H 1.09000 * 109.47076 * 79.78671 * 3 2 1 27 27 H 1.09002 * 109.46978 * 184.42122 * 4 3 2 28 28 H 1.08996 * 109.47476 * 304.42791 * 4 3 2 29 29 H 1.09001 * 109.47023 * 300.00197 * 6 5 4 30 30 H 1.09003 * 109.46794 * 59.99848 * 6 5 4 31 31 H 0.96996 * 120.00437 * 179.97438 * 10 9 7 32 32 H 1.09006 * 109.47624 * 175.00461 * 17 15 2 33 33 H 1.09000 * 109.47698 * 295.00654 * 17 15 2 34 34 H 1.00903 * 110.99885 * 56.04770 * 18 17 15 35 35 H 1.00906 * 110.99978 * 180.02562 * 18 17 15 36 36 H 1.09004 * 115.54969 * 330.58260 * 19 15 2 37 37 H 1.09001 * 117.50363 * 214.97090 * 20 19 15 38 38 H 1.09001 * 117.50042 * 359.97438 * 20 19 15 39 39 H 1.08994 * 117.50323 * 252.51206 * 21 20 19 40 40 H 1.09011 * 117.50020 * 107.48484 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.4454 1.3611 -0.4883 5 8 3.4866 0.9280 -1.8495 6 6 4.8022 0.8829 -2.4056 7 6 4.7271 0.4150 -3.8362 8 1 3.7703 0.1765 -4.2768 9 6 5.8797 0.2926 -4.5829 10 7 7.0447 0.5836 -4.0465 11 14 5.7866 -0.2866 -6.3563 12 1 4.9490 0.6554 -7.1414 13 1 7.1537 -0.3336 -6.9342 14 1 5.1830 -1.6426 -6.4032 15 6 1.9955 -0.7659 1.1376 16 1 3.0797 -0.6611 1.1757 17 6 1.6314 -2.2425 0.9705 18 7 2.1141 -2.7214 -0.3317 19 6 1.3858 -0.2343 2.4363 20 6 0.4988 -1.1854 3.2421 21 6 1.8964 -0.8272 3.7510 22 1 -0.3633 0.3737 0.9574 23 1 -0.3632 0.6423 -0.8022 24 1 -0.3634 -1.0158 -0.1551 25 1 1.3931 1.9919 -0.6635 26 1 1.9556 1.7760 1.0114 27 1 3.8610 2.3660 -0.4141 28 1 4.0314 0.6791 0.1278 29 1 5.2456 1.8780 -2.3711 30 1 5.4167 0.1912 -1.8292 31 1 7.8557 0.4971 -4.5716 32 1 2.0966 -2.8239 1.7666 33 1 0.5488 -2.3579 1.0214 34 1 3.1063 -2.5660 -0.4291 35 1 1.8853 -3.6950 -0.4664 36 1 1.1168 0.8220 2.4314 37 1 -0.3538 -0.7549 3.7674 38 1 0.3490 -2.1901 2.8469 39 1 2.6664 -1.5963 3.6908 40 1 1.9635 -0.1609 4.6112 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385175850.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:15 Heat of formation + Delta-G solvation = -34.192482 kcal Electronic energy + Delta-G solvation = -18221.835953 eV Core-core repulsion = 15457.820519 eV Total energy + Delta-G solvation = -2764.015434 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.51502 -38.41795 -36.46714 -34.94918 -34.63696 -31.01722 -28.92430 -28.81781 -25.73257 -24.39750 -24.06073 -23.14382 -22.81152 -19.72567 -18.54842 -17.64083 -17.16368 -17.09778 -16.87348 -16.18192 -15.85412 -15.58152 -15.03886 -14.85752 -14.38639 -14.13090 -13.84708 -13.55492 -13.40580 -13.01478 -12.74807 -12.69217 -12.53623 -12.43684 -12.26528 -12.11688 -11.93975 -11.62016 -11.28249 -11.20056 -10.84349 -10.74472 -10.09811 -9.32227 -8.87849 -8.27161 -6.38301 1.41675 1.46927 1.55120 2.38816 2.80765 3.06340 3.09378 3.32913 3.64245 3.83387 3.98010 4.04724 4.18647 4.27855 4.30155 4.38187 4.49568 4.61229 4.63591 4.69976 4.75436 4.78099 4.85465 4.89918 4.98786 5.01681 5.09882 5.17101 5.22699 5.24821 5.25331 5.60675 6.03608 6.24512 6.33373 6.49491 6.63729 6.72611 6.93978 7.33889 8.85065 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.033529 B = 0.005033 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.909853 B = 5561.449087 C = 5736.594659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.522 5.522 3 C 0.065 3.935 4 C 0.064 3.936 5 O -0.389 6.389 6 C 0.212 3.788 7 C -0.540 4.540 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.933 5.933 11 Si 0.981 3.019 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.266 1.266 15 C 0.116 3.884 16 H 0.058 0.942 17 C 0.079 3.921 18 N -0.846 5.846 19 C -0.193 4.193 20 C -0.168 4.168 21 C -0.173 4.173 22 H 0.039 0.961 23 H 0.055 0.945 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.040 0.960 28 H 0.030 0.970 29 H -0.021 1.021 30 H -0.020 1.020 31 H 0.269 0.731 32 H 0.034 0.966 33 H 0.080 0.920 34 H 0.336 0.664 35 H 0.342 0.658 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.102 0.898 39 H 0.091 0.909 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.614 -3.840 15.244 20.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.245 5.245 3 C -0.063 4.063 4 C -0.013 4.013 5 O -0.308 6.308 6 C 0.137 3.863 7 C -0.578 4.578 8 H 0.077 0.923 9 C -0.191 4.191 10 N -0.572 5.572 11 Si 0.804 3.196 12 H -0.191 1.191 13 H -0.200 1.200 14 H -0.191 1.191 15 C 0.006 3.994 16 H 0.077 0.923 17 C -0.052 4.052 18 N -0.376 5.376 19 C -0.213 4.213 20 C -0.205 4.205 21 C -0.211 4.211 22 H 0.057 0.943 23 H 0.074 0.926 24 H 0.085 0.915 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.058 0.942 28 H 0.049 0.951 29 H -0.003 1.003 30 H -0.002 1.002 31 H 0.078 0.922 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.148 0.852 35 H 0.155 0.845 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.110 0.890 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.942 -3.566 14.343 19.645 hybrid contribution 1.095 -0.206 0.674 1.302 sum -11.848 -3.772 15.017 19.496 Atomic orbital electron populations 1.22285 0.86661 1.02171 1.00035 1.61906 1.08323 1.12361 1.41868 1.22087 0.93904 0.90627 0.99658 1.22507 0.97639 0.96943 0.84257 1.87928 1.29392 1.87989 1.25497 1.19730 0.80239 0.93117 0.93212 1.21328 0.93934 1.45603 0.96933 0.92339 1.25923 0.94205 0.95019 1.03957 1.70069 0.98633 1.49368 1.39178 0.85264 0.77564 0.79187 0.77562 1.19101 1.19954 1.19130 1.21264 0.97915 0.93757 0.86415 0.92349 1.21884 1.00442 0.93302 0.89567 1.58423 1.21627 1.24276 1.33239 1.22930 1.06223 0.99210 0.92927 1.23146 0.94182 1.00435 1.02761 1.22981 0.97780 1.03586 0.96718 0.94256 0.92571 0.91524 0.90735 0.91481 0.94209 0.95133 1.00310 1.00222 0.92182 0.94810 0.90218 0.85218 0.84476 0.87902 0.87895 0.87959 0.89018 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.91 8.96 127.69 1.14 2.06 16 2 N -0.52 -15.90 4.31 -897.04 -3.86 -19.76 16 3 C 0.07 2.03 5.25 86.30 0.45 2.48 16 4 C 0.06 2.54 6.13 71.98 0.44 2.98 16 5 O -0.39 -20.13 10.27 -148.98 -1.53 -21.66 16 6 C 0.21 12.49 5.69 71.24 0.41 12.90 16 7 C -0.54 -33.47 9.43 25.60 0.24 -33.23 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.60 16 9 C 0.01 0.41 5.46 84.66 0.46 0.88 16 10 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 11 Si 0.98 45.78 29.54 68.60 2.03 47.81 16 12 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 15 C 0.12 3.00 2.23 44.91 0.10 3.10 16 16 H 0.06 1.78 6.58 -2.39 -0.02 1.77 16 17 C 0.08 1.85 4.53 86.30 0.39 2.24 16 18 N -0.85 -23.94 9.35 -186.71 -1.75 -25.69 16 19 C -0.19 -3.82 3.87 -10.79 -0.04 -3.86 16 20 C -0.17 -2.62 9.50 30.59 0.29 -2.33 16 21 C -0.17 -2.88 10.00 30.59 0.31 -2.58 16 22 H 0.04 0.82 6.53 -2.38 -0.02 0.81 16 23 H 0.06 1.47 7.86 -2.39 -0.02 1.45 16 24 H 0.07 1.67 6.81 -2.39 -0.02 1.66 16 25 H 0.07 2.35 7.75 -2.39 -0.02 2.33 16 26 H 0.07 1.70 6.32 -2.39 -0.02 1.68 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.03 1.21 6.68 -2.39 -0.02 1.19 16 29 H -0.02 -1.27 8.14 -2.39 -0.02 -1.29 16 30 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 31 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 32 H 0.03 0.69 7.59 -2.38 -0.02 0.68 16 33 H 0.08 1.71 5.64 -2.39 -0.01 1.70 16 34 H 0.34 10.66 8.99 -89.69 -0.81 9.85 16 35 H 0.34 7.98 9.08 -89.69 -0.81 7.17 16 36 H 0.10 2.07 6.37 -2.39 -0.02 2.06 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.10 1.54 5.80 -2.39 -0.01 1.53 16 39 H 0.09 1.56 7.98 -2.39 -0.02 1.54 16 40 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -69.31 315.92 -1.22 -70.53 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.59 Total: 21.36 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.19 Total: -15.37 kcal Atomic # 7 Polarization: -97.35 SS G_CDS: -5.32 Total: -102.67 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -1.53 Total: -21.66 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -69.31 -1.22 -70.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385175850.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.338 kcal (2) G-P(sol) polarization free energy of solvation -69.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds